mRNA_H-paniculata_contig57370.13296.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57370.13296.1
Unique NamemRNA_H-paniculata_contig57370.13296.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57370.13296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57370contigH-paniculata_contig57370:435..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size612
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57370.13296.1prot_H-paniculata_contig57370.13296.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57370 482..937 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930618.0627134-UTR-H-paniculata_contig57370:434..4811622930618.0627134-UTR-H-paniculata_contig57370:434..481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57370 435..481 +
1691481374.730432-UTR-H-paniculata_contig57370:434..4811691481374.730432-UTR-H-paniculata_contig57370:434..481Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57370 435..481 +
1622930618.0955315-UTR-H-paniculata_contig57370:937..10461622930618.0955315-UTR-H-paniculata_contig57370:937..1046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57370 938..1046 +
1691481374.7503846-UTR-H-paniculata_contig57370:937..10461691481374.7503846-UTR-H-paniculata_contig57370:937..1046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig57370 938..1046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930618.082974-CDS-H-paniculata_contig57370:481..9371622930618.082974-CDS-H-paniculata_contig57370:481..937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57370 482..937 +
1691481374.739718-CDS-H-paniculata_contig57370:481..9371691481374.739718-CDS-H-paniculata_contig57370:481..937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57370 482..937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57370.13296.1

>prot_H-paniculata_contig57370.13296.1 ID=prot_H-paniculata_contig57370.13296.1|Name=mRNA_H-paniculata_contig57370.13296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MNLLVALCAAPIHKSTDPDLPDFGREGENPLQSLNSFHRVFSSSHNLCPV
TPFTRVRGSTWLLSHYFESRRPFLLAASNTPARPLSTFSVCMTAITELAG
FTVSLFGCINSGTAVHTYNRHCNIENSSRLYKSQTLSSIQPFILSIVFRI
L*
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mRNA from alignment at H-paniculata_contig57370:435..1046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57370.13296.1 ID=mRNA_H-paniculata_contig57370.13296.1|Name=mRNA_H-paniculata_contig57370.13296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at H-paniculata_contig57370:435..1046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCAGTCTTGTGGAACAGAGGGAGTACTTAACCAGTTACAAGGGACATG
AACTTGCTGGTAGCGCTCTGCGCCGCACCCATACATAAATCCACAGACCC
GGATTTGCCAGATTTTGGGAGGGAGGGAGAAAATCCCCTACAATCACTAA
ATTCCTTCCACCGCGTCTTCAGCTCCTCACACAACCTTTGCCCTGTCACG
CCTTTCACTCGCGTGCGTGGCTCAACTTGGCTTCTCTCCCATTATTTTGA
ATCCCGACGTCCCTTCTTACTAGCAGCCTCCAACACACCCGCTCGCCCTC
TTTCAACTTTCTCTGTATGCATGACAGCCATCACTGAATTGGCGGGCTTT
ACTGTGTCATTGTTCGGCTGTATCAATTCCGGAACCGCAGTCCACACGTA
TAACAGACACTGCAACATCGAAAACTCTTCCCGCCTGTATAAAAGTCAGA
CTTTGTCTTCGATTCAACCTTTCATTTTATCCATTGTCTTCCGAATTTTG
TGATGTACTCCCTCTGTTCCGTAAGTCTGCGTACTTGAGGAAATTTTCCA
TATCTCCTCGGGATGATGTTCGATCTTAACATGGATTGTTGCGTTGGATT
CTGTGACGTTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig57370:435..1046+

>mRNA_H-paniculata_contig57370.13296.1 ID=mRNA_H-paniculata_contig57370.13296.1|Name=mRNA_H-paniculata_contig57370.13296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig57370:435..1046+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACTTGCTGGTAGCGCTCTGCGCCGCACCCATACATAAATCCACAGA
CCCGGATTTGCCAGATTTTGGGAGGGAGGGAGAAAATCCCCTACAATCAC
TAAATTCCTTCCACCGCGTCTTCAGCTCCTCACACAACCTTTGCCCTGTC
ACGCCTTTCACTCGCGTGCGTGGCTCAACTTGGCTTCTCTCCCATTATTT
TGAATCCCGACGTCCCTTCTTACTAGCAGCCTCCAACACACCCGCTCGCC
CTCTTTCAACTTTCTCTGTATGCATGACAGCCATCACTGAATTGGCGGGC
TTTACTGTGTCATTGTTCGGCTGTATCAATTCCGGAACCGCAGTCCACAC
GTATAACAGACACTGCAACATCGAAAACTCTTCCCGCCTGTATAAAAGTC
AGACTTTGTCTTCGATTCAACCTTTCATTTTATCCATTGTCTTCCGAATT
TTGTGAATGAACTTGCTGGTAGCGCTCTGCGCCGCACCCATACATAAATC
CACAGACCCGGATTTGCCAGATTTTGGGAGGGAGGGAGAAAATCCCCTAC
AATCACTAAATTCCTTCCACCGCGTCTTCAGCTCCTCACACAACCTTTGC
CCTGTCACGCCTTTCACTCGCGTGCGTGGCTCAACTTGGCTTCTCTCCCA
TTATTTTGAATCCCGACGTCCCTTCTTACTAGCAGCCTCCAACACACCCG
CTCGCCCTCTTTCAACTTTCTCTGTATGCATGACAGCCATCACTGAATTG
GCGGGCTTTACTGTGTCATTGTTCGGCTGTATCAATTCCGGAACCGCAGT
CCACACGTATAACAGACACTGCAACATCGAAAACTCTTCCCGCCTGTATA
AAAGTCAGACTTTGTCTTCGATTCAACCTTTCATTTTATCCATTGTCTTC
CGAATTTTGTGA
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