mRNA_H-paniculata_contig57344.13292.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57344.13292.1
Unique NamemRNA_H-paniculata_contig57344.13292.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57344.13292.1 vs. uniprot
Match: D7G0H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.310e-15
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QLLGRQDPYLKLYVGRGGTKVKTKVHIDGSRKASWDETFKFDLQ 132
            Q++GRQDPYLKL+VGR GTKVKTKVH DG + A+W+ETF FDLQ
Sbjct:   24 QMIGRQDPYLKLWVGRAGTKVKTKVHEDGGKVATWNETFVFDLQ 67
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BLAST of mRNA_H-paniculata_contig57344.13292.1 vs. uniprot
Match: A0A6H5L027_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L027_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.490e-15
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QLLGRQDPYLKLYVGRGGTKVKTKVHIDGSRKASWDETFKFDLQ 132
            QL+GRQDPYLKL+ GR GTKVKTKVH DG + A+W+ETF FDLQ
Sbjct:   24 QLIGRQDPYLKLWAGRAGTKVKTKVHEDGGKVATWNETFAFDLQ 67
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BLAST of mRNA_H-paniculata_contig57344.13292.1 vs. uniprot
Match: A0A835YV56_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV56_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.830e-9
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 QLLGRQDPYLKLYVGRGGTKVKTKVHIDGSRKASWDETFKFDL 129
            QL+G QDPYLKL+ G GG  ++TKVH DG   A W++ F FD+
Sbjct:   20 QLIGTQDPYLKLWAGSGGDVLRTKVHTDGGSSAVWNQRFVFDV 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57344.13292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0H2_ECTSI3.310e-1575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L027_9PHAE4.490e-1575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV56_9STRA4.830e-955.81C2 domain-containing protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57344contigH-paniculata_contig57344:788..919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-19_003310.1
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930617.383078-CDS-H-paniculata_contig57344:787..9191622930617.383078-CDS-H-paniculata_contig57344:787..919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57344 788..919 +
1691481374.455176-CDS-H-paniculata_contig57344:787..9191691481374.455176-CDS-H-paniculata_contig57344:787..919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57344 788..919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57344.13292.1prot_H-paniculata_contig57344.13292.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57344 788..919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57344.13292.1

>prot_H-paniculata_contig57344.13292.1 ID=prot_H-paniculata_contig57344.13292.1|Name=mRNA_H-paniculata_contig57344.13292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
QLLGRQDPYLKLYVGRGGTKVKTKVHIDGSRKASWDETFKFDLQ
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mRNA from alignment at H-paniculata_contig57344:788..919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57344.13292.1 ID=mRNA_H-paniculata_contig57344.13292.1|Name=mRNA_H-paniculata_contig57344.13292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig57344:788..919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTCTAGGCAGACAGGACCCGTATCTTAAGCTCTACGTGGGACGGGG
AGGAACAAAGGTCAAAACGAAGGTGCATATTGATGGCTCCAGGAAAGCCT
CTTGGGATGAAACTTTCAAGTTCGACTTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig57344:788..919+

>mRNA_H-paniculata_contig57344.13292.1 ID=mRNA_H-paniculata_contig57344.13292.1|Name=mRNA_H-paniculata_contig57344.13292.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig57344:788..919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTTCTAGGCAGACAGGACCCGTATCTTAAGCTCTACGTGGGACGGGG
AGGAACAAAGGTCAAAACGAAGGTGCATATTGATGGCTCCAGGAAAGCCT
CTTGGGATGAAACTTTCAAGTTCGACTTGCAGCAGCTTCTAGGCAGACAG
GACCCGTATCTTAAGCTCTACGTGGGACGGGGAGGAACAAAGGTCAAAAC
GAAGGTGCATATTGATGGCTCCAGGAAAGCCTCTTGGGATGAAACTTTCA
AGTTCGACTTGCAG
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