prot_H-paniculata_contig5733.13290.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5733.13290.1
Unique Nameprot_H-paniculata_contig5733.13290.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length242
Homology
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.530e-27
Identity = 63/142 (44.37%), Postives = 97/142 (68.31%), Query Frame = 0
Query:    1 MMNSLDEGSIEEMMSTGGAHGDT-FHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAM--------SRINNSGSY 133
            M N +  G+I ++M  GGA G   ++P +QVV L+++   N  +DRWR+VLSDG+H  Q+MLATQ+N +++ G ++ELC + +++Y+VNVVQ+K+LII+L ++V +GP  K+G P+N  EDS A         S  NN+G Y
Sbjct:    1 MANLISRGAINQIM--GGATGAAGYNPTVQVVSLKKM--TNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPAPKIGDPINFSEDSSARVKPELGGGSNNNNTGHY 138          
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: D7FUU2_ECTSI (Rep-A_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU2_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 8.790e-23
Identity = 49/104 (47.12%), Postives = 75/104 (72.12%), Query Frame = 0
Query:   38 IVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAM--------SRINNSGSY 133
            + N  +DRWR+VLSDG+H  Q+MLATQ+N +++ G ++ELC + +++Y+VNVVQ+K+LII+L ++V +GP  K+G P+N  EDS A         S  NN+G+Y
Sbjct:    1 MTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGGSSNNNTGNY 104          
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A1E7F2H4_9STRA (Replication protein A subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2H4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.300e-18
Identity = 46/118 (38.98%), Postives = 82/118 (69.49%), Query Frame = 0
Query:    4 SLDEGSIEEMMSTGGAHGDT-FHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVL-TGPQAKVGKPVNIEE 119
            SL + ++  ++ +   H D+ F PV Q+++++ V   N  +DR+R++LSDG H +Q M+ATQ   L+ +G+++    ++I EY+VN VQ+KK+ I+LN++V+ T P  K+G+PV+IE+
Sbjct:    5 SLTQDAVRTLIGSNEGHQDSSFSPVCQIINIKNVTNKNDGNDRYRIILSDGVHYIQGMVATQLKHLMIDGSVKTHNIIRINEYMVNTVQAKKICIILNLDVIDTSPSEKIGEPVDIEK 122          
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A7S2WB61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WB61_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.840e-18
Identity = 47/120 (39.17%), Postives = 78/120 (65.00%), Query Frame = 0
Query:    1 MMNSLDEGSIEEMMSTGGAHGDT-FHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEE 119
            M +SL   ++  M+ + G   D  F P+LQV+ + +V   N  ++R+RV+LSDG H VQ MLATQ+N L+    + +   +K TE++ N+VQ K ++I+LN+EV++    K+G P++IE+
Sbjct:    1 MSSSLTADAVARMVKSEGKSTDPYFAPILQVLKVMKVSAANANNERFRVILSDGTHYVQGMLATQQNCLVQSQKLMDNTIIKATEFMNNLVQGKSVVILLNLEVVSSGHDKIGNPMDIEK 120          
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A0F7ST61_PHARH (Replication protein A subunit n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7ST61_PHARH)

HSP 1 Score: 91.7 bits (226), Expect = 1.540e-17
Identity = 43/106 (40.57%), Postives = 74/106 (69.81%), Query Frame = 0
Query:   23 TFHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAMSRIN 128
            TFHPVLQV++++RV  +   SDR+R++LSD  + +Q MLATQ N ++++G++Q    +K+T + +N+V S++L+IVL +EV+     K+G+  NIE+  + +   N
Sbjct:   25 TFHPVLQVINIKRVAPMGEQSDRYRLILSDANYYIQGMLATQFNQMIDDGSLQRYSIIKLTNFAINMVHSRRLVIVLGMEVVQSVAEKLGETENIEKVENPIGPAN 130          
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A199VIT2_ANACO (Replication protein A 70 kDa DNA-binding subunit C n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VIT2_ANACO)

HSP 1 Score: 87.8 bits (216), Expect = 2.030e-17
Identity = 47/122 (38.52%), Postives = 77/122 (63.11%), Query Frame = 0
Query:    5 LDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAMSR 126
            L  G++  + S GGA G    PVLQV  LR V    + ++R+R++LSDG H  Q MLATQ N ++  G++Q+   V++ EY+ NV+Q +++II++N+EVL G    +G P   + ++ + S+
Sbjct:    7 LTRGAVAAI-SEGGAEG--MRPVLQVWDLRLVNTAQSTTERYRMLLSDGVHMQQAMLATQMNGIVKSGSLQKGSIVQLNEYICNVIQGRRIIIIINLEVLRGESEMIGNPKTYDNNATSASQ 125          
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 7.150e-17
Identity = 50/115 (43.48%), Postives = 80/115 (69.57%), Query Frame = 0
Query:    2 MNSLDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVN 116
            M +L  GSI+++++ G   G T  P LQV+++++V      +DR+R+++SDG++  Q MLATQ N L++   +QELC VK+T Y+VN VQ ++++I L +EV++GP  KVG P N
Sbjct:    1 MANLTSGSIQQIVN-GEVTGLT--PTLQVINVKKVQ--GAGADRFRLIISDGQYYAQCMLATQLNHLVSSNELQELCIVKLTNYVVNNVQGRRIVIGLAVEVVSGPVPKVGDPQN 110          
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: M2XRH2_GALSU (Replication protein A subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XRH2_GALSU)

HSP 1 Score: 89.0 bits (219), Expect = 1.320e-16
Identity = 52/128 (40.62%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    3 NSLDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRV--GIVNTP-SDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAMSRI 127
            ++L  GS++ +     A   T   VLQV+ L+++     N P ++R+R+VLSD RH  Q+ML+TQ N L+ E  +Q  C V++ EY+VN V  K++IIVLN+E +TGP  K+G PVN+E+  +  + +
Sbjct:    5 HALSVGSVKAIY----AGETTQQAVLQVLELKKIIPSGQNVPQTERYRMVLSDSRHYQQSMLSTQLNALVREQKVQTGCLVRLLEYVVNDVAQKRIIIVLNLEPVTGPLEKIGNPVNVEQAQNVQTGL 128          
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A396HQ15_MEDTR (Replication protein A subunit n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396HQ15_MEDTR)

HSP 1 Score: 88.6 bits (218), Expect = 1.970e-16
Identity = 56/147 (38.10%), Postives = 92/147 (62.59%), Query Frame = 0
Query:    1 MMNSLDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRV-GIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAMSRINNSGSY--AAGDANQYGGN 144
            M  +L +G+I  M  T     +  HPVLQV+ L+ V    N+ ++R+RVVLSDG H  Q MLATQKN L++ G +Q+   VK+++++ NVVQ++K+II+++++V+      +GKP    ++  A S ++++G+   AAG      GN
Sbjct:    1 MAVNLTQGAIVTMCFTS----EDLHPVLQVIDLKLVQSQQNSGTERYRVVLSDGLHYQQGMLATQKNELVHSGRLQKGSIVKLSQFICNVVQNRKIIIIVDLDVIMDKCDLIGKPDPAPKEDPAQSAVSHAGNVQSAAGHLGSNAGN 143          
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A6I9R6K3_ELAGV (Replication protein A subunit n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R6K3_ELAGV)

HSP 1 Score: 88.2 bits (217), Expect = 2.650e-16
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 0
Query:    5 LDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEED---------SHAMSRINNSGSYAAGDANQYGG 143
            L  G+I  M+S GGA G    PVLQV  +R V    + ++R+R++LSDG HT Q MLATQ N ++  GT+Q+   V++ E++ N +Q +++IIV+N+EVL      +G P   +             A S   N  S AAG+   YGG
Sbjct:    6 LTRGAIA-MISEGGAEG--MKPVLQVSDVRLVNTTQSTTERYRMMLSDGVHTQQAMLATQMNPIVKNGTLQKGSVVQLNEFICNTIQGRRIIIVINLEVLVPKSDIIGAPTPFDSGVSASQNRAPMSAQSTSINQPSMAAGNPQPYGG 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE7.530e-2744.37Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU2_ECTSI8.790e-2347.12Rep-A_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A1E7F2H4_9STRA1.300e-1838.98Replication protein A subunit n=1 Tax=Fragilariops... [more]
A0A7S2WB61_9STRA1.840e-1839.17Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A0F7ST61_PHARH1.540e-1740.57Replication protein A subunit n=1 Tax=Phaffia rhod... [more]
A0A199VIT2_ANACO2.030e-1738.52Replication protein A 70 kDa DNA-binding subunit C... [more]
A0A7S3XQ94_HETAK7.150e-1743.48Replication protein A subunit n=1 Tax=Heterosigma ... [more]
M2XRH2_GALSU1.320e-1640.63Replication protein A subunit n=1 Tax=Galdieria su... [more]
A0A396HQ15_MEDTR1.970e-1638.10Replication protein A subunit n=1 Tax=Medicago tru... [more]
A0A6I9R6K3_ELAGV2.650e-1638.51Replication protein A subunit n=3 Tax=Arecaceae Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007199Replication factor-A protein 1, N-terminalPFAMPF04057Rep-A_Ncoord: 6..105
e-value: 1.8E-24
score: 85.6
NoneNo IPR availableGENE3D2.40.50.140coord: 3..119
e-value: 6.8E-30
score: 105.3
NoneNo IPR availablePANTHERPTHR23273REPLICATION FACTOR A 1, RFA1coord: 22..125
NoneNo IPR availablePANTHERPTHR23273:SF33coord: 22..125
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5733contigH-paniculata_contig5733:856..5297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5733.13290.1mRNA_H-paniculata_contig5733.13290.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5733 840..5297 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5733.13290.1 ID=prot_H-paniculata_contig5733.13290.1|Name=mRNA_H-paniculata_contig5733.13290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=242bp
MMNSLDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRVGIVNTPSDRWRVVL
SDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLN
IEVLTGPQAKVGKPVNIEEDSHAMSRINNSGSYAAGDANQYGGNGNSNPH
GGGGGAGAGPNSYGGNGHGNLYGGGGNSKSYGGNGNANPYGGGDDVKPYG
GKGNANPYRGREDVKPKVGSSNPYGQQSKAASNPYGGDDRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007199Rep_factor-A_N
IPR012340NA-bd_OB-fold