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Homology
BLAST of mRNA_H-paniculata_contig573.13288.1 vs. uniprot
Match: D8LSQ9_ECTSI (Similar to kinesin-C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ9_ECTSI) HSP 1 Score: 119 bits (298), Expect = 2.080e-28 Identity = 69/124 (55.65%), Postives = 82/124 (66.13%), Query Frame = 1
Query: 64 PTSKKQRHMIQAPGSSTGAMLVGSSKPLGGSLRKQEEMAKFFEHAKAQSSVEYVPRACAEKILKQVHLDAEETKIRHQDVMSTLEATYHQIDENTRRHYSTLIVRLQMEMRVELRRLAKERKEQ 435
P SK+ + SS GA ++GSSK LG K EEM KF +H K Q YVP CAEKIL+Q AEETK RHQ+V+ TL+ATY I++ T RHY+ LI+RLQ EMR ELRRLAKE K Q
Sbjct: 81 PGSKEALFKRRISASSAGAAVLGSSKDLGIESEKHEEMQKFMDHIKQQPRATYVPMGCAEKILEQAGATAEETKTRHQNVVVTLDATYRAINQRTTRHYADLILRLQQEMRTELRRLAKESKTQ 204
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 121.3 |
| Seed ortholog evalue | 3.7e-25 |
| Seed eggNOG ortholog | 2880.D8LSQ9 |
| KEGG ko | ko:K10406 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | microtubule motor activity |
| EggNOG OGs | COG5059@1,KOG0239@2759 |
| COG Functional cat. | Z |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04812 |
| Exons | 4 |
| Model size | 436 |
| Cds size | 435 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig573.13288.1 >prot_H-paniculata_contig573.13288.1 ID=prot_H-paniculata_contig573.13288.1|Name=mRNA_H-paniculata_contig573.13288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
QVLGPPQWNATTDVVIGDDGAPTSKKQRHMIQAPGSSTGAMLVGSSKPLG
GSLRKQEEMAKFFEHAKAQSSVEYVPRACAEKILKQVHLDAEETKIRHQD
VMSTLEATYHQIDENTRRHYSTLIVRLQMEMRVELRRLAKERKEQ back to topmRNA from alignment at H-paniculata_contig573:22646..26426- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig573.13288.1 ID=mRNA_H-paniculata_contig573.13288.1|Name=mRNA_H-paniculata_contig573.13288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3781bp|location=Sequence derived from alignment at H-paniculata_contig573:22646..26426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTCTCGGACCACCGCAATGGAACGCAACTACCGACGTAGTCATTGG
CGATGACGGCGCACCGACGTCCAAAAAACAGCGACATATGATTCAAGCTC
CCGGGTCTAGCACGGGGGCGATGCTTGTCGGCTCTTCGAAACCTCTCGGG
GGTAGCCTGCGGAAGCAGGTATCTACCAGAGGAGAAAGTCGACCTCCTTG
CCATCATCGTAGTCGCCTATGGGTTCAAATCTACTTTGAAAGTGAAACGT
GCAATCAAGACTAGACTAGCTGCAGGTGATTATTTTGTTCCTGAACCGGT
TTTTCTGGCTAAGACTAAAACACCCAGGTCAGCAGAACCACCTCTGCCGA
TGGCGCTTGATCACTGTCTGTTAATCAGGCCGGTACATGATTCCGCGATA
ATACACGGTAGTAAAATATGGAAGTTTCGCCCGAACAACCTTTCACAACC
TTCGGTGGTGAGTAATATTTGGGTCTTGGAATTCCGATGGTCGTTTCAGA
TCAGGTTATCTCTCTGAACTTTCTTCACGTAGATGCTGAGAATGGATCGA
ATGCACAGGAACGATAACGCTTGCAGCTAGTGCTCTGTTTTTCCCTCAAG
CGTTCTCGTGGATCTTTCGTGGACGATCGAACGCAGGAGGAAATGGCAAA
GTTCTTCGAGCACGCTAAGGCACAGTCGAGCGTGGAGTACGTACCCAGGG
CCTGCGCGGAGAAGATATTGAAACAGGTTCGTGGACGTGACAGATACGTC
TGACTTGACGACTGTTCGTGTCAGTCTCATCGAGTTGGCTGGCTTATCGA
GGCGGTGTGCTAGAACTATCGTTCGACCGCCAACCCATTGTCATAAGCAA
GCATCACCCCCGCCGCCGTGCGTCAGAGGTGAGGAAGCTTCAGCTTAATG
GTCGACACAAAGTTTGCGACACCTGCAGGTATACGAGACCTTGTTTCGTA
GCAGTGGAAAGTATCTCGCGGACACTTCTTTACGGGTGCCCTCGTGCATC
CACCCTTCTCAGGAACATGTAGTGTGATCTACGCTTCCGAGATGTTGGAG
ATGTCGTCGAGCGTTCATTGGTGGAAATGTTTTTTCTCCAATTTTCCTCG
ATGTCTGCGGCATCAGCACGTTTAAAAAGCACAAGGAGAAACGTTTATCA
AGCATTTCGGTGCTTTTGTCGCCCTATGCCCCCTCTGCCTGTGGCATGCT
CATATTTCTGTACAATAGGTACACCTGGATGCCGAAGAAACTAAGATTCG
ACATCAAGACGTCATGAGTACACTCGAGGCCACGTACCACCAGATCGACG
AGAACACACGGCGGTAAGCCAAAACAGTTGTGCGCGAGGGGGGAGGGAGG
GGGGGGGGGCTTACCGTTAGGATGTCGCCGGTGAATACTCCCTCCGTCCC
ATAAGTCTGCGACGCCGTGATCTCTCCTTCTTGTGTAGGTCGTTTCTCTA
TGAATACGAATGGTTTTTCGGTTATGTAGCTTGAATTGAACCTGTCGACG
TAAACTTCAAGAGTGCTTATTTCGTTATCGAATATTGTTCCGAGATAGTT
CCGAAAAATTCGCGAAAAGGGGAACTAAAAAACGGCCCGTTTCGGCTCCA
TTGTGAGTGGCTGCGCTGCGTCCGGTGGCAGACAAAGCCCCCCCCCTATC
GTCACACAACATCTCAGCACTTTGCCAAGAGCTGTACGACTCTCGTGCAG
TCCCCAGACCGTCTGCAGCGCGAGTATCGCAACCAACATTCCCACTCCGG
CGAGTCCGGCATCTTTTGGGGAGAGCCCATCAGTCCGGGGTAAAAATTGA
GAGCTGAGCGAGGAAGGTCGAAACGCGTTGGCCATACGGTACGCTTTAGC
GCTACCTCCCGATAAAAAACGGCTTCCGAAAGGCGTTGGGCCATAGTTGA
CGGAGCAGTTTGGGGTTGGCAACCAACATCCCAGACAACTTTGGGCGCGT
GTACGAGAACAACTGGACCATAGTGTTACGAAGCGGGCTGTCGTCGGACT
TCACACCGACCCTCGAACAATTGTCTACCAAACTAACCGAAGTCAGTTTC
GTAGCCGGCAGCTCAAAGCCTCAGCGATGGCTCAAAGAGATGGGCGCCAC
GAGTGGGAAACAGCGTATTACCCCATCTTTGTCGCCGACGCACCGAAATA
GCCGGGTAGACTTTATCCTGGACCAAGCAACAAGGAACCGCATCACTTTC
AGGAGCGGCTTCCAAACATTTCACATCGACGAAGCGTGGTTTTACCTATC
TCGCGACAGGGATTGCGTCCGCATGCTCCCCGAGGAGGAAAGGGTGGGGT
CCAGCACAAGAGTCACATTCCTAAGGTGATGTTCATCTGCGCCGTTTCAC
GTCCAGATCCTTCCCGCGATTTCGACGGCAAGATCGGCATCTGGAGTGTT
TGCGTCATCAAGCAGGCGCAGAGGATTCTGCCCAGCGTGAACGGGGGAAG
CAATACGGGTTCGACGTGACTATTGACGCCGAGTGGTACCAGAAATGGTA
CAAGGACTCTTTTCTCCCAACATTGAAGGAAAAGATGCCATGGTTGGAGG
GTGAGGAAGTGGTCGCTCAGCAGAACGGAGCGACCCCCGACACGGGGAAG
ACACGCCGCGGAAGCTCAACGAACTCGGGAGGGACGGAGGGTGGAACGCC
AATCTCATAACTCAGCGTGCACAGTGACCAGATCTTAACATGAACGACTT
GGGGTTCTTTGCATCTCTGAAACGTAGGGTTGGGAAGGAGCGTTATGCTA
CGATAAATCGCCTTGTGGAAGGGGTAAAGAGAATGTACGATATGTACGAC
GCGGAAACCTTAGAGAGGGTGTGGCAGAGCCTCTTTAAGTGGTATAATCA
GGTCTTGAGGGCGCTAGGAGGTAACGATTTCGACGTACAGTACACCGAAA
CCAAGAAAAGACGTGCGGGAAGTCTGCCAAAATCGGTCAAAATCGACCGA
GAGGCTTCCGATGCGGCGGTAGAATGATGGATTGATGGGAACAAGGAAAG
CTGTAACGGACACAATTAACGTGAAAAACACCAAGGATTACGACGCAACA
ACCCGTTTTTGATTCGGAGGTCATTGCAACAAGTTACACCCTTCACGTCG
CAGACTTATGGGACGGAGGGAGTATTTCGTTAGAGCTTCATGTGTGACGA
GCATTGACTGGAGAGCTCCCGTACCCTTGAGCATTTCATAGCTCGATATG
ATAACACAAGTCTGATGTGCTGGGCAACTACCGAAGGATTGAGTATACAG
CCGAGGAGATATACATGTCAGCTGCGTGGTGGATTGACATAGGCTGACAT
TTCTTTGAGAAACGACCATTGACAGAAATGGGAGCTTGGCCCCTATTTCA
GTTTGGCAGTTGAATGATGTGCTTCCTCACCCCTCCCCCCCCACACCTCT
CGCCGCCGCCCAGTAGGAGTATTGTTGGCTGCACTGAACATTTCGCATGG
CATAAAAATATTTCGTAACACATTGGGAGATCCACCCTCGCTTTGGATAT
CAACCCTCTGTCTTCGCATGATAGAAGGGGAGCAAGATCGAACAACCGGG
CGGTCAGCCATTGCACTCGATCACCTTCTGCTACTATCTAGCGTTCCTGC
TGTTTACCAGCGCAGTGTCATCTTCGGTGTACCTAGCCGACACCTGCCAA
TTCGTGTACCGTTACACAACACACTCGCGTGCCGACGTTGGGCGTGTAGG
CACTATTCGACACTCATCGTACGGTTGCAAATGGAGATGAGGGTGGAGCT
GCGTCGTCTTGCGAAGGAGCGCAAGGAACAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig573:22646..26426- >mRNA_H-paniculata_contig573.13288.1 ID=mRNA_H-paniculata_contig573.13288.1|Name=mRNA_H-paniculata_contig573.13288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig573:22646..26426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTTCTCGGACCACCGCAATGGAACGCAACTACCGACGTAGTCATTGG
CGATGACGGCGCACCGACGTCCAAAAAACAGCGACATATGATTCAAGCTC
CCGGGTCTAGCACGGGGGCGATGCTTGTCGGCTCTTCGAAACCTCTCGGG
GGTAGCCTGCGGAAGCAGCAGGTTCTCGGACCACCGCAATGGAACGCAAC
TACCGACGTAGTCATTGGCGATGACGGCGCACCGACGTCCAAAAAACAGC
GACATATGATTCAAGCTCCCGGGTCTAGCACGGGGGCGATGCTTGTCGGC
TCTTCGAAACCTCTCGGGGGTAGCCTGCGGAAGCAGGAGGAAATGGCAAA
GTTCTTCGAGCACGCTAAGGCACAGTCGAGCGTGGAGTACGTACCCAGGG
CCTGCGCGGAGAAGATATTGAAACAGGAGGAAATGGCAAAGTTCTTCGAG
CACGCTAAGGCACAGTCGAGCGTGGAGTACGTACCCAGGGCCTGCGCGGA
GAAGATATTGAAACAGGTACACCTGGATGCCGAAGAAACTAAGATTCGAC
ATCAAGACGTCATGAGTACACTCGAGGCCACGTACCACCAGATCGACGAG
AACACACGGCGGTACACCTGGATGCCGAAGAAACTAAGATTCGACATCAA
GACGTCATGAGTACACTCGAGGCCACGTACCACCAGATCGACGAGAACAC
ACGGCGGCACTATTCGACACTCATCGTACGGTTGCAAATGGAGATGAGGG
TGGAGCTGCGTCGTCTTGCGAAGGAGCGCAAGGAACAGGCACTATTCGAC
ACTCATCGTACGGTTGCAAATGGAGATGAGGGTGGAGCTGCGTCGTCTTG
CGAAGGAGCGCAAGGAACAG back to top
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