mRNA_H-paniculata_contig573.13287.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig573.13287.1 vs. uniprot
Match: D8LSQ9_ECTSI (Similar to kinesin-C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ9_ECTSI) HSP 1 Score: 384 bits (987), Expect = 2.030e-108 Identity = 385/1096 (35.13%), Postives = 517/1096 (47.17%), Query Frame = 1
Query: 346 VEQVKEELRSAVASRKKVKDEIKVWLKEFEEREGRPASNEDKLGIREMFVAHKRLERSTAQLTSELQALEAETKKN----------SLQFPRTADETAIAATSPGGGTATGAESGNT---------ATVIIQTLREENASLRVRL-------AAAAPIVVKLTDTSTPDMFSLR----------------VLVDTEDSRAAQSA-----------AKAVEDATAIAAELQEALQKSRQEQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAALEVAREEMKVCQLVVDEGSEAARLREQ---------------VAVLKTDLDAKSRAATAGWDAAAGGESDVAAAEARGLRAGVKRGRSDAEKKARDALLFLRKCT-LTFPCILVVVVMFPALPPLQIRALKEALAAATAAKISATATIGADTTATAVAEPQSGSSPN-----NTDA-VSTADEGGDTLASRRGDGSVDAESLKLKNAERELENLRERTDDARGEAERATDELQRVRTKYDEQREREADLVSAVAALEKEKEVLSRGLVLAEEXXXXXXXXXAAQKEDATHARQEAALSAAQVRRVSREQGLSPPQRVAGGRPPISSTNRRNTEQLRLAAATLVHAVKDGTELWKAERRTECHALYVKAGTRAATQMPPGQAQDDLRVALTAARGLNPAKAAVALRKAFDTVIEAAMVAKETVDADREERRAGGAVPKPASTSVTSKAKGVSGAAKGKKTSAPSDMIERDPPDDQPHASGESSKVGDTQTISPAIRASSPATVSHHGDGEWSVVCCERSRT-LESLQRQFDALTARQHDLSQAAAITIASANTNYGGAESETLAD----------------GGVVGARLAAATQRCAEMEDRIDELEAECRGLQQVIDDGPPVSDTGG-GSGDAAGTAAGLTASRNREQLSKIRVLEKKNREEXXXXXXXXXXXXXXXQKLASPSVGSDKQSIAKEKAASKAAEDAKKKSA----------------REIQKINSQLETASQGWESCKSGLQAVQKERDDLKRQVVASMGAMDKELEGLRARAEEATQLGKQLEEATTETERIQGLYQSEQA 3306
+E++K EL++ ++KKVK EIK WLK+FEEREGRPA NE+K IR+ FV HK+LE++ A+L +++QALEA+ +KN + P T A+A GGG A GA G+T AT +++ LREEN SL +L A + +L +T+ + S+ +V + QSA A A ED AEL E+L+ ++QE ALE AREE+K CQLVVDE SEAARLR+Q V LK DLDAKSRAATAGWDAAA ES+ AAEARGL+AG+KRGR++AE K R L K T L+ + V A + +AL T + +T+GA A A A+ S + + +A VS A +GGD L+ + ++ +L+NAE+EL+NLRER DA+GE LVSAVA+LEKEKE LSRG+ +A+E RR EQLRLAAATLVHA+K+GTELWK ERR ECHALYVKAG RA +QMPPGQA DDLRVA+ AA+GLNPAKAA+ALRKAFDTVIEAAMVAK T++ R R G+ + A+ S +G + + S T + SLQRQ +AL+ARQ + + GG + L AT+RC EMED+ID+LE EC+ L++ + + PP + + G GS G + G++++R R +I+ LE+KN++ KL + +AK KAAS AA +E +K+ ++LE A++GWESCK+ L ++KERDDL RQ V+SMG M +E++ LR RAE AT+L +L EAT T R++ L+Q EQ+
Sbjct: 678 LEELKAELQATTVAKKKVKAEIKGWLKDFEEREGRPAGNEEKGAIRDKFVEHKKLEKALAKLAADIQALEAQIEKNDSLAAEGGGGATTMPNTPATPAMAGF--GGGYAAGAGFGDTSTAAVDAAAATAMLEKLREENTSLTAKLEESERRKAQLKTALGELNNTTVKMLGSVHSSATALEPPSPSSDPAAVVPFQQKDGGQSAQQTISTLEKEGALAAEDTGIREAELDESLRVAQQE-------------------------ARDAALASKKSEHLREQASLALEAAREELKACQLVVDEASEAARLRDQASDHCLLRVTEDKLEVEALKVDLDAKSRAATAGWDAAANAESEAEAAEARGLQAGIKRGRAEAEWKVRSLKEELSKATALSGASVAVASAADSARSAAPPSPMLDALDTKTEITVCGASTVGAAAAAVAAADTISDTKQGIDRSGSVEAWVSEAGDGGDGLSP------AERKARELENAEKELQNLREREQDAKGEXXXXXXXXXXXXXXXXXXXXXXXGLVSAVASLEKEKEALSRGMEMAQE--------------------------------------------------------RRTAEQLRLAAATLVHAIKEGTELWKRERREECHALYVKAGGRAVSQMPPGQAVDDLRVAIAAAKGLNPAKAAIALRKAFDTVIEAAMVAKGTLEQQRSAARRSGSNXXXXXXXXXXXXXXXXSRGGASXXXXXXXXXXXXXARNAXXXXXXXXXXXXXXXXXXXXXXXXXASASSADEGNENAAKQDGSTTKVASLQRQLEALSARQKESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGA--SLLEVATRRCTEMEDKIDDLEVECKALREALAEQPPAAGSDGIGSKAPQGGSGGVSSARARADALRIKSLEQKNKD-----------GVDQVTKLEAH--------VAKLKAASNAANGKASXXXXXXXXXXXXXXXXXMQKETEKLGAELEAAAKGWESCKNDLAQLKKERDDL-RQQVSSMGTMGEEMQVLRTRAEAATRLESELXEATANTSRLEDLFQVEQS 1662
BLAST of mRNA_H-paniculata_contig573.13287.1 vs. uniprot
Match: A0A6H5KQ51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ51_9PHAE) HSP 1 Score: 253 bits (646), Expect = 1.730e-65 Identity = 322/1041 (30.93%), Postives = 436/1041 (41.88%), Query Frame = 1
Query: 346 VEQVKEELRSAVASRKKV--------------------KDEIKVWLKEFEEREGRPASNEDKLGIREMFVAHKRLERSTAQLTSELQALEAETKKN----------SLQFPRTADETAIAATSPGGGTATGAESGNT---------ATVIIQTLREENASLRVRLAAAAPIVVKL-TDTSTPDMFSLRVLVDTEDSRAAQSAAKAVEDATAIAAELQEALQKSRQEQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAALEVAREEMKVCQLVVDEGSEAARLREQVAVLKTDLDAKSRAATAGWDAAAGGESDVAAAEARGLRAGVKRGRSDAEKKARDALLFLRKCTLTFPCILVVVVMFPALPPLQIRALKEALAAATAAKISATATIGADTTATAVAEPQ-----SGSSPNNTDAVSTADEGGDTLASRRGDGSVDAESLKLKNAERELENLRERTDDARGEAERATDELQRVRTKYDEQREREADLVSAVAALEKEKEVLSRGLVLAEEXXXXXXXXXAAQKEDATHARQEAALSAAQVRRVSREQG----------LSPPQRVAGGRPPISSTNR------------------------------------------------------------------------------------RNTEQLRLAAATLVHAVKDGTELWKAERRTECHALYVKAGTRAATQMPPGQAQDDLRVALTAARGLNPAKAAVALRKAFDTVIEAAMVAKETVDADREERRAGGAVPK-------------------------PASTSVTSKAKGVSGAAKGKKTSAPSDMIERDPPDDQPHASGESSKVGDTQTISPAIRASSPATVSHHGDGEWSVVCCERSRT-LESLQRQFDALTARQHDLSQAAAITIASANTNY-------------GGAESETLADGGVVGARLAAATQRCAEMEDRIDELE---------AECRGLQQVIDDGPPVSDTGG-GSGDAAGTAAGLTASRNREQLSKIRVLEKKNRE 2904
+E++K EL++ A++KK K EIK WLK+FEEREGRPA NE+K IR+ FV HK++E++ A+L ++QALEAE +KN ++ P T A+A GGG A G G+T AT +++ LREENASL V+L + +L T + ++++L S A D ++ Q+ +S Q+ ++ L EE+K CQLVVDE SEAARLREQ A + AE R + +K E+ ++ L T+ P+ P + K + A+A DT +++P+ SGS V +GGD G S + ++ +L+NAE+EL+NLRER + EA LVSAVA LEKEKE LSRG+ +A+E AA E+A ARQE+AL+AA+ RR SR+ G L+ PQR GGRPP +S NR R EQLRLAAATLVHA+K+GTELWK ERR ECHALYVKAG RA +QMPPGQA DDLRVA+ AA+GLNPAKAA+ALRKAFDTVIEAAMVAK T++ R E R G+ AS SV+ + A G T+ DM+E + AI + A+VS +G+ + + S T + SLQRQ +AL+ARQ + G E E A G + L AT+RC EMED+ID LE EC+ L++ + + PP + G GS +R R +I+ LE+KN++
Sbjct: 241 LEELKAELQATTAAKKKACCEAIANNVQQSLNHHPVSAKAEIKGWLKDFEEREGRPAGNEEKGAIRDKFVEHKKMEKALAKLAEDIQALEAEIEKNDNLAAEGGGGAMPMPNTPATPAMAGF--GGGHAAGTGFGDTSTPAVDAAAATAMLEKLREENASLTVKLEESERRKAQLKTALGELNNTTVKMLGKANYSATALEPPSPSSDPASVVPFQQKENGQSAQQTISRLEKDRALAAEDTGIREAELEESLRVAQQARGRARLCSVTHYVLN--GEELKACQLVVDEASEAARLREQ----------------------ASNHCLLRVAEDRLVVRSLK------EELSKATALSAAGATVXXXXXXXXXXXXPSPMPDALETTKITVFGASAVGAXXXXVAATDT----ISDPKQVIDRSGSVKA---WVGEVGDGGD------GRSSAEWKARELENAEKELQNLRER--EXXXXXXXXXXXXXXXXXXXXXXXXXEAGLVSAVALLEKEKEALSRGMEMAQERAALATELVAAHAEEAAKARQESALNAAKFRRASRDAGQASAAPTTGALAKPQRAPGGRPPTASGNRCVAPWPGTQEAKHATVLSLREMRRVLMLTIHPGNKVMDRKDTAWKSLGNAQKADMVGAVRKDHEYWCYASFISWPNSAKNLSRRRTAEQLRLAAATLVHAIKEGTELWKRERREECHALYVKAGGRAVSQMPPGQAVDDLRVAIAAAKGLNPAKAAIALRKAFDTVIEAAMVAKGTLEQQRNEARRSGSSSNRNSAXXXXXXXXXXXXXXXXXXXXXXASGSVSPARNAAATTAAGNTTA---DMVEN----------------------AAAIANALAASVSSADEGDENAAKQDGSATKVASLQRQLEALSARQEESXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDGEGEGKAKGSA--SLLEVATRRCTEMEDKIDGLEDGVDYSLFAVECKALREALAEKPPAGGSDGIGSXXXXXXXXXXXXARARADALRIKSLEQKNKD 1207 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig573.13287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig573.13287.1 >prot_H-paniculata_contig573.13287.1 ID=prot_H-paniculata_contig573.13287.1|Name=mRNA_H-paniculata_contig573.13287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1104bp MEEERMIGAEDSCMAAMDLVRYRRGARQAQVQPSRESKPTQESAAIASESback to top mRNA from alignment at H-paniculata_contig573:3453..17917- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig573.13287.1 ID=mRNA_H-paniculata_contig573.13287.1|Name=mRNA_H-paniculata_contig573.13287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14465bp|location=Sequence derived from alignment at H-paniculata_contig573:3453..17917- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig573:3453..17917- >mRNA_H-paniculata_contig573.13287.1 ID=mRNA_H-paniculata_contig573.13287.1|Name=mRNA_H-paniculata_contig573.13287.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6624bp|location=Sequence derived from alignment at H-paniculata_contig573:3453..17917- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |