mRNA_H-paniculata_contig573.13286.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig573.13286.1
Unique NamemRNA_H-paniculata_contig573.13286.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: D8LSQ9_ECTSI (Similar to kinesin-C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ9_ECTSI)

HSP 1 Score: 356 bits (914), Expect = 6.470e-110
Identity = 167/225 (74.22%), Postives = 198/225 (88.00%), Query Frame = 1
Query:    1 KYWNLMEDMKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRPRDTPPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLEV 675
            KYWN+MEDMKGKIRVF RCRP+A+YEL++ C+RAVRF+D++TVEV   HG KQFVFD+VFSE+H QA +FEDTR LVQSA+DG+NVCVFAYGQTGSGKTWTMTGG GD +GL PRAI E++GNIEKAKG+++ KVSCYF+ELYLDN+RDL FAMD P  TPP+L+I +D+NKMV +KNVV+K+A DA +L  LF  GN QRKVGGTKMNAESSRSHS+FSVLLEV
Sbjct: 1666 KYWNMMEDMKGKIRVFARCRPLAQYELNQDCKRAVRFVDDSTVEVDGHHGAKQFVFDSVFSEEHGQAAIFEDTRNLVQSALDGFNVCVFAYGQTGSGKTWTMTGGKGDQRGLTPRAIEEVFGNIEKAKGALEVKVSCYFIELYLDNLRDLLFAMDHPTGTPPRLEIHMDSNKMVVVKNVVVKEARDASDLMHLFAAGNHQRKVGGTKMNAESSRSHSVFSVLLEV 1890          
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: A0A6V1MSS8_HETAK (Kinesin-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSS8_HETAK)

HSP 1 Score: 289 bits (740), Expect = 2.210e-92
Identity = 142/226 (62.83%), Postives = 177/226 (78.32%), Query Frame = 1
Query:    1 KYWNLMEDMKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRP--RDTPPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLE 672
            KYWN+MEDMKGKIRV+ RCRPMAKYEL+R C++AVRF+DE T+E+ + HGPKQFV+D VFS  ++Q DVFEDT+ L+QS +DGYNVC+FAYGQTGSGKT+TMTG D    G+ PR I ++YG IE+   ++   VS YFVELY D + DL++++D    R+ PPKLDIKLDA KMVF+KNV ++ A  A EL  LF  GNA R VG T MNAESSRSHSIF++L+E
Sbjct:  144 KYWNMMEDMKGKIRVYARCRPMAKYELERGCQQAVRFVDETTIEINSAHGPKQFVYDAVFSPANTQEDVFEDTKNLMQSCLDGYNVCLFAYGQTGSGKTFTMTGSDA-MPGVTPRGIRQLYGLIEQNSANLDVTVSTYFVELYNDGLVDLYWSLDHDARREQPPKLDIKLDAKKMVFIKNVTLRTAASADELLSLFDQGNANRHVGATAMNAESSRSHSIFAILIE 368          
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: A0A836C7Z6_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Z6_9STRA)

HSP 1 Score: 271 bits (692), Expect = 8.460e-87
Identity = 141/218 (64.68%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   25 MKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRPRDT-PPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLEV 675
            MKGKIRVF RCRP A YE +R C++ V FLDE T+EV    GPKQF+FD  F     Q +VFED + LV+SA+DG+NVCVFAYGQTGSGKT+TM+G   +  GL PR I EI+   E   G     +SCYFVELYLDN+RDLF+A+D PRDT PPKLDIK+D  KMV++K VV K A  A+ELS LF  GN  RKVGGTKMNAESSRSHSIFSVLLEV
Sbjct:    1 MKGKIRVFARCRPFAGYERERGCQQCVAFLDETTLEVRGSRGPKQFIFDAAFPASVGQEEVFEDMKNLVRSAMDGFNVCVFAYGQTGSGKTFTMSGTP-EMPGLTPRTIAEIFLLKEGLAGVADVTISCYFVELYLDNLRDLFYAVDNPRDTKPPKLDIKVDEKKMVYVKGVVTKPAASAEELSALFDAGNRMRKVGGTKMNAESSRSHSIFSVLLEV 217          
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: A0A7S1U107_9STRA (Kinesin-like protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U107_9STRA)

HSP 1 Score: 251 bits (642), Expect = 6.040e-79
Identity = 124/226 (54.87%), Postives = 162/226 (71.68%), Query Frame = 1
Query:    1 KYWNLMEDMKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDG-DNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRPR-DTPPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLE 672
            KYWN+MEDMKGKIRV+ RCRP A+YE +R   + V F+DE+T+ V    GP++F +DNVF+   +Q +VF++   L+QSA+DGYNVC FAYGQTGSGKT+TMTG  G ++ GL PR + E +  I + +G I  KVSCYFVELY D  RDLF+ +D  R +TPPKLDIKL+    V+++N ++K+    +EL  LF  GNA R V  T MNA SSRSHSIF++ LE
Sbjct:   39 KYWNMMEDMKGKIRVYARCRPFAQYEKERGASQVVTFVDESTLAVDTSRGPREFTYDNVFAPGSTQQEVFDECSSLMQSALDGYNVCCFAYGQTGSGKTYTMTGVPGTEHAGLTPRLVDECFNLIAENEGKIDVKVSCYFVELYNDGFRDLFWPLDHGRRETPPKLDIKLNQRHTVYIRNAIVKEVTHGEELLDLFERGNANRVVASTNMNATSSRSHSIFAIQLE 264          
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: A0A482SJC9_9ARCH (Kinesin motor domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJC9_9ARCH)

HSP 1 Score: 238 bits (608), Expect = 8.720e-74
Identity = 122/231 (52.81%), Postives = 164/231 (71.00%), Query Frame = 1
Query:    1 KYWNLMEDMKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRPRDT-------PPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLE 672
            KY N +ED+KG IRV+ RCRPMAKYEL+R C+  V   DE ++++    G K+F FD VF    +Q  VFEDT+RLV+S +DG+NVC+FAYGQTGSGKT+TMTG      GL P+AI E++  I++ +  +Q KV+ YFVELY DN+ DL++ +D            PPKLDIK+DA KMV++KN +IK+A   +EL  LF +GN +R  G TKMNAESSRSHSIF+++++
Sbjct:  111 KYKNELEDLKGAIRVYARCRPMAKYELERGCKAVVDIKDETSLKLTTSRGEKEFEFDAVFGPLSTQDQVFEDTKRLVESCMDGFNVCLFAYGQTGSGKTFTMTGSS-SMPGLTPKAIEELFRLIQE-RVHLQVKVTTYFVELYNDNLVDLYWILDNKSALAKNANLEPPKLDIKMDAKKMVYIKNAIIKEANSPEELMNLFNVGNLERHTGATKMNAESSRSHSIFAIMVD 339          
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: A0A7S1CA28_9STRA (Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA28_9STRA)

HSP 1 Score: 239 bits (609), Expect = 2.710e-72
Identity = 123/227 (54.19%), Postives = 159/227 (70.04%), Query Frame = 1
Query:    1 KYWNLMEDMKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRP--RDTPPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLEV 675
            KYWN+MEDMKGKIRV+ R RPM+  E++R     V+F D+ ++++    G +QFVFD  F    SQ  VF DT+ L+QSA DGYNVC+FAYGQTGSGKT+TMTG  G + G+ PRA+ EI+   E    S++ +++CY VELY D++ DLF+ MD+   +  P KLDIK D   MV++ N +IK+A DA E+  LF  GN  R VG TKMNAESSRSH IFSVL+EV
Sbjct:  192 KYWNMMEDMKGKIRVYARARPMSGSEIERGNYSVVKFPDDVSIDLETPKGLRQFVFDATFGPGTSQEAVFNDTKNLIQSAFDGYNVCIFAYGQTGSGKTYTMTGAAG-SPGVTPRAMAEIFDLAEGNAKSMRTRITCYMVELYNDSLVDLFWTMDKKLSKGAPAKLDIKKDKKGMVYITNAIIKEAADAGEILTLFDAGNGARHVGATKMNAESSRSHLIFSVLIEV 417          
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: A0A067BRV6_SAPPC (Kinesin-like protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BRV6_SAPPC)

HSP 1 Score: 228 bits (581), Expect = 2.230e-70
Identity = 114/216 (52.78%), Postives = 152/216 (70.37%), Query Frame = 1
Query:   25 MKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRPRDTPPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLE 672
            MKGKIRV+ RCRPM+  ELDR C  AV+FLDE T+E+    GPK F +D VF+  ++Q  VFEDT+ L+QSA+DGYNVC+FAYGQTGSGKT+TMTG   D+ G+ PR I  ++ + +  KG+   K   Y +ELY D + DLFF +D   D  PKL+IK +   MV ++N+V+K   D  +  +LF   N +R+VG TKMNAESSRSHS+F++L+E
Sbjct:    1 MKGKIRVYCRCRPMSGSELDRGCHSAVKFLDEYTLELETPRGPKSFAYDQVFNPSNTQDQVFEDTKNLLQSALDGYNVCIFAYGQTGSGKTFTMTG-TADHPGITPRLIDLMFKSGDALKGNNTIKYEAYMLELYNDALIDLFFQLDNHPDKAPKLEIKKNDKGMVVVQNIVVKPCTDTHQTLKLFDQANKKRQVGATKMNAESSRSHSVFTILIE 215          
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: A0A7S3H8M4_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8M4_9STRA)

HSP 1 Score: 239 bits (611), Expect = 3.460e-69
Identity = 120/228 (52.63%), Postives = 163/228 (71.49%), Query Frame = 1
Query:    1 KYWNLMEDMKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRPRDT----PPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLE 672
            KY N +ED+KG IRV+ RCRPMAKYE++R C+  V   D+ ++++  Q G K+F FD VF +  +Q  VFEDT+RLV+S +DG+NVC+FAYGQTGSGKT+TMTG      GL P+AI E++ +I++ +     +V+ YFVELY DN+ DL+F +D         PPKLDIK+DA KMV+++N VIK+A    EL  LF  GN +R  G TKMNAESSRSHSIF+++++
Sbjct: 1464 KYKNELEDLKGAIRVYARCRPMAKYEIERGCKSVVELKDDTSLKLVTQRGEKEFEFDAVFGDNSTQDQVFEDTKRLVESCMDGFNVCLFAYGQTGSGKTFTMTGSP-SMPGLTPKAIDELFRHIDE-RPHCNVRVTTYFVELYNDNLVDLYFVLDNKNKPGIAEPPKLDIKMDAKKMVYIRNAVIKEANSPSELMDLFNSGNLERHTGATKMNAESSRSHSIFAIMVD 1689          
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: A0A7S1C812_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C812_9STRA)

HSP 1 Score: 239 bits (609), Expect = 6.200e-69
Identity = 123/227 (54.19%), Postives = 159/227 (70.04%), Query Frame = 1
Query:    1 KYWNLMEDMKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRP--RDTPPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLEV 675
            KYWN+MEDMKGKIRV+ R RPM+  E++R     V+F D+ ++++    G +QFVFD  F    SQ  VF DT+ L+QSA DGYNVC+FAYGQTGSGKT+TMTG  G + G+ PRA+ EI+   E    S++ +++CY VELY D++ DLF+ MD+   +  P KLDIK D   MV++ N +IK+A DA E+  LF  GN  R VG TKMNAESSRSH IFSVL+EV
Sbjct:  192 KYWNMMEDMKGKIRVYARARPMSGSEIERGNYSVVKFPDDVSIDLETPKGLRQFVFDATFGPGTSQEAVFNDTKNLIQSAFDGYNVCIFAYGQTGSGKTYTMTGAAG-SPGVTPRAMAEIFDLAEGNAKSMRTRITCYMVELYNDSLVDLFWTMDKKLSKGAPAKLDIKKDKKGMVYITNAIIKEAADAGEILTLFDAGNGARHVGATKMNAESSRSHLIFSVLIEV 417          
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Match: T0QAH1_SAPDV (Kinesin motor domain-containing protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QAH1_SAPDV)

HSP 1 Score: 236 bits (602), Expect = 5.220e-68
Identity = 117/224 (52.23%), Postives = 158/224 (70.54%), Query Frame = 1
Query:    1 KYWNLMEDMKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFVFDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGGDGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMDRPRDTPPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGGTKMNAESSRSHSIFSVLLE 672
            KY+N +EDMKGKIRV+ RCRPM+  EL+R C  AV+FLDE T+E+    GPK F +D VF+  ++Q  VFEDT+ L+QSA+DGYNVC+FAYGQTGSGKT+TMTG   D+ G+ PR I  ++ + +  KG+       Y +ELY D + DLFF +D   D  PKL+IK +   MV ++N+V+K   D  +  +LF   N +R+VG TKMNAESSRSHS+F++L+E
Sbjct: 1002 KYYNTIEDMKGKIRVYCRCRPMSGSELERGCHSAVKFLDEYTLELETPRGPKSFAYDQVFNPSNTQDQVFEDTKNLLQSALDGYNVCIFAYGQTGSGKTFTMTG-TADHPGITPRLIDLMFKSGDALKGNNTITYEAYMLELYNDALIDLFFQLDNHPDKAPKLEIKKNDKGMVVVQNIVVKPCTDTHQTLKLFDHANKKRQVGATKMNAESSRSHSVFTILIE 1224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig573.13286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSQ9_ECTSI6.470e-11074.22Similar to kinesin-C n=1 Tax=Ectocarpus siliculosu... [more]
A0A6V1MSS8_HETAK2.210e-9262.83Kinesin-like protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836C7Z6_9STRA8.460e-8764.68Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S1U107_9STRA6.040e-7954.87Kinesin-like protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A482SJC9_9ARCH8.720e-7452.81Kinesin motor domain-containing protein n=1 Tax=ar... [more]
A0A7S1CA28_9STRA2.710e-7254.19Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A067BRV6_SAPPC2.230e-7052.78Kinesin-like protein n=1 Tax=Saprolegnia parasitic... [more]
A0A7S3H8M4_9STRA3.460e-6952.63Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S1C812_9STRA6.200e-6954.19Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
T0QAH1_SAPDV5.220e-6852.23Kinesin motor domain-containing protein n=2 Tax=Sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig573contigH-paniculata_contig573:914..3230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.9
Seed ortholog evalue1.4e-92
Seed eggNOG ortholog2880.D8LSQ9
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons5
Model size675
Cds size660
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig573.13286.1prot_H-paniculata_contig573.13286.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig573 914..3215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930616.533045-CDS-H-paniculata_contig573:913..10421622930616.533045-CDS-H-paniculata_contig573:913..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 914..1042 -
1691481373.946905-CDS-H-paniculata_contig573:913..10421691481373.946905-CDS-H-paniculata_contig573:913..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 914..1042 -
1622930616.5462759-CDS-H-paniculata_contig573:1347..14971622930616.5462759-CDS-H-paniculata_contig573:1347..1497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 1348..1497 -
1691481373.970852-CDS-H-paniculata_contig573:1347..14971691481373.970852-CDS-H-paniculata_contig573:1347..1497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 1348..1497 -
1622930616.562437-CDS-H-paniculata_contig573:1654..18021622930616.562437-CDS-H-paniculata_contig573:1654..1802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 1655..1802 -
1691481373.9880805-CDS-H-paniculata_contig573:1654..18021691481373.9880805-CDS-H-paniculata_contig573:1654..1802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 1655..1802 -
1622930616.5829887-CDS-H-paniculata_contig573:2251..24281622930616.5829887-CDS-H-paniculata_contig573:2251..2428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 2252..2428 -
1691481374.002478-CDS-H-paniculata_contig573:2251..24281691481374.002478-CDS-H-paniculata_contig573:2251..2428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 2252..2428 -
1622930616.6000376-CDS-H-paniculata_contig573:3159..32151622930616.6000376-CDS-H-paniculata_contig573:3159..3215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 3160..3215 -
1691481374.0125742-CDS-H-paniculata_contig573:3159..32151691481374.0125742-CDS-H-paniculata_contig573:3159..3215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig573 3160..3215 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930616.6166494-UTR-H-paniculata_contig573:3215..32301622930616.6166494-UTR-H-paniculata_contig573:3215..3230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig573 3216..3230 -
1691481374.0226848-UTR-H-paniculata_contig573:3215..32301691481374.0226848-UTR-H-paniculata_contig573:3215..3230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig573 3216..3230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig573.13286.1

>prot_H-paniculata_contig573.13286.1 ID=prot_H-paniculata_contig573.13286.1|Name=mRNA_H-paniculata_contig573.13286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MEDMKGKIRVFVRCRPMAKYELDRKCERAVRFLDEATVEVAAQHGPKQFV
FDNVFSEQHSQADVFEDTRRLVQSAIDGYNVCVFAYGQTGSGKTWTMTGG
DGDNQGLIPRAIGEIYGNIEKAKGSIQAKVSCYFVELYLDNIRDLFFAMD
RPRDTPPKLDIKLDANKMVFLKNVVIKDAPDAQELSRLFTLGNAQRKVGG
TKMNAESSRSHSIFSVLLEV
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mRNA from alignment at H-paniculata_contig573:914..3230-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig573.13286.1 ID=mRNA_H-paniculata_contig573.13286.1|Name=mRNA_H-paniculata_contig573.13286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2317bp|location=Sequence derived from alignment at H-paniculata_contig573:914..3230- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATACTGGAATCTGATGGAGGATATGAAAGGCAAGATCAGGGTCTTCGT GCGGTGCAGGCCGATGGCCAAGTGAGTCACCTCCTCATATAGGGTAGATA CAAGATTGAGCTTCGGACCACGGCTTATAGAAGCAACATGAGTGTAATTG CAGTATTAAGGCGAGTTTGTGCAGAACACATATCACGAGAGCTAGAAGCA TTGCTCCTTTGTGTGGTGTAGGAGCCGTTCTAAACGTTGATGTTCATTTC CCTTTCCCCCGTTTTTCCGGCTTTCCTCTTTATCCGTTTTGTTTTTTCAC CTTTGTCCAATTTGTCTAAATCTCAATAAACTAAAACGCGATATTTCTGC TTACAGTGTTCGTCGACCCCATTTCAAGTTATTTTTCGATTCTTCTGACA TAATCCCAGCGTCGTCTTATCCAGAAAAGGAAACAGATGAGGACATGGTA ACATGGGGGGAAGAGGGGGTAAAGAAAGGGGAACAACATTCACATTTAGA ACGACCCGAACAGCATCAAGAGTATGGTCCACGACACCCTGCAGAACGAA TCAGACGAAGAAGTCCTCGTTCATACTGAAATTTGGTTTACAGAGTGCCC GACCGATTCCGGATGCTTGATACAGAACAATGTTACCAATATAACGCCCT CCGACCGTACCCACGAATTCGAAGTGTCCCTTCCATATTCACCGGATCGG CAGGAAAAAGGGGAGTCAGTCAGTTGAAGCCGTGCGTAATGAATGCGTAT ATTATATGAACATTGCGCTCACTTCGTCTTTTCGCACACGAAACCAACCA AGGTACGAGCTGGATCGAAAGTGCGAGCGAGCTGTCCGGTTCCTCGACGA GGCGACAGTCGAGGTGGCCGCGCAACATGGTCCGAAGCAGTTTGTGTTCG ACAACGTGTTCTCCGAGCAGCATAGCCAAGCGGATGTTTTCGAAGACACA CGGAGGCTTGTGCAATCCGCTATAGATGGGTACGCTCGACAGTGTCACAA AACTTCTTGGTCGACGATTCATGGTGCACGAGTTTATCAAATGATCTCTG TTTACACTTGTGGAAGAGTGTGTAAACGGCGATGGCTTGCCCTCACTATG CCGATAGTCGAACTTCCTCCACGTCTTGCGTCTCCCACGCGTTGGGGTGC CAAATGGTCAGCCTTTAGAACGAGGCGTTTTTGGACCGAACGAAAAGCGC GCGACCGTTCGTTCCGACTTACGATAGTACAAAACGTATTGGGGTAGATA GATCCCTTAGTAATGGTCAAATTCAAGAACAGGCGTACAGTACGCCCTCG TTCCGTTGCGTCTTCCCGAGGACACGTGGTCAATGACGTAACAACTACGA CGTGAAAAACATGAGTACGCCGCCCCCCCCGCCTGCCTGTTGGTGGAACA ACCCCACTCCTCGTGTCTTGGTTTGCAGCTATAACGTTTGCGTGTTTGCC TACGGGCAAACCGGTTCCGGAAAGACGTGGACTATGACCGGCGGCGACGG CGATAACCAGGGCTTGATCCCCAGGGCGATAGGCGAGATCTACGGGAACA TCGAGAAAGCGAAGGGCAGTATCCAGGTGTGCGCGTTGTGTCGCAGGTGT GGACAATGACAAACGAGAATAGCACAATCTTTGTCGAGCTACTGGTATTG GCGCAACTGAGGCTGAGGTTTGGGATGACCGATCTTAATACTTTCTCACA CACATGAAATGCATCAATTTGTCCTCTTCTCAGGCGAAGGTGTCGTGCTA CTTCGTAGAGCTGTACCTTGACAATATCAGGGACCTATTCTTCGCCATGG ATCGTCCCCGAGATACCCCGCCGAAACTAGATATTAAGCTAGATGCGAAC AAGATGGTCTTCCTCAAGAACGTGGTGATCAAGGTGAGAAGGAAGCTTCA AGCTACATACCAAACAAATCATTCTACGCTGTGTTTTCTTGGCTGGCTCT CCATGTCCCGGTGGCGTGTGTTAAGGAAGGTACCCTATGTCACGTAAGGA AGGTAAATAGCCCCATCCGACAGGCATCGAGGAAAGCTGTGAAAACATTT TAATGTTCCGTCATCCATATATAGTTCCGACGGAGTGCGGATAACGATTG CCGCGCATTCCCTGGGCAGAAAAACGCGAGTACGTACTCGATAGGTCGGT CACATATTAATTAGAATATTCGCGTAATAATGAATCAGGATGCTCCCGAT GCTCAAGAGCTGTCAAGATTATTCACCCTGGGGAACGCTCAGCGCAAGGT CGGCGGGACGAAGATGAACGCAGAGTCTAGTCGCTCGCACTCCATCTTCA GCGTCTTACTGGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig573:914..3230-

>mRNA_H-paniculata_contig573.13286.1 ID=mRNA_H-paniculata_contig573.13286.1|Name=mRNA_H-paniculata_contig573.13286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig573:914..3230- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGATATGAAAGGCAAGATCAGGGTCTTCGTGCGGTGCAGGCCGAT
GGCCAAATGGAGGATATGAAAGGCAAGATCAGGGTCTTCGTGCGGTGCAG
GCCGATGGCCAAGTACGAGCTGGATCGAAAGTGCGAGCGAGCTGTCCGGT
TCCTCGACGAGGCGACAGTCGAGGTGGCCGCGCAACATGGTCCGAAGCAG
TTTGTGTTCGACAACGTGTTCTCCGAGCAGCATAGCCAAGCGGATGTTTT
CGAAGACACACGGAGGCTTGTGCAATCCGCTATAGATGGGTACGAGCTGG
ATCGAAAGTGCGAGCGAGCTGTCCGGTTCCTCGACGAGGCGACAGTCGAG
GTGGCCGCGCAACATGGTCCGAAGCAGTTTGTGTTCGACAACGTGTTCTC
CGAGCAGCATAGCCAAGCGGATGTTTTCGAAGACACACGGAGGCTTGTGC
AATCCGCTATAGATGGCTATAACGTTTGCGTGTTTGCCTACGGGCAAACC
GGTTCCGGAAAGACGTGGACTATGACCGGCGGCGACGGCGATAACCAGGG
CTTGATCCCCAGGGCGATAGGCGAGATCTACGGGAACATCGAGAAAGCGA
AGGGCAGTATCCAGCTATAACGTTTGCGTGTTTGCCTACGGGCAAACCGG
TTCCGGAAAGACGTGGACTATGACCGGCGGCGACGGCGATAACCAGGGCT
TGATCCCCAGGGCGATAGGCGAGATCTACGGGAACATCGAGAAAGCGAAG
GGCAGTATCCAGGCGAAGGTGTCGTGCTACTTCGTAGAGCTGTACCTTGA
CAATATCAGGGACCTATTCTTCGCCATGGATCGTCCCCGAGATACCCCGC
CGAAACTAGATATTAAGCTAGATGCGAACAAGATGGTCTTCCTCAAGAAC
GTGGTGATCAAGGCGAAGGTGTCGTGCTACTTCGTAGAGCTGTACCTTGA
CAATATCAGGGACCTATTCTTCGCCATGGATCGTCCCCGAGATACCCCGC
CGAAACTAGATATTAAGCTAGATGCGAACAAGATGGTCTTCCTCAAGAAC
GTGGTGATCAAGGATGCTCCCGATGCTCAAGAGCTGTCAAGATTATTCAC
CCTGGGGAACGCTCAGCGCAAGGTCGGCGGGACGAAGATGAACGCAGAGT
CTAGTCGCTCGCACTCCATCTTCAGCGTCTTACTGGAGGTGGATGCTCCC
GATGCTCAAGAGCTGTCAAGATTATTCACCCTGGGGAACGCTCAGCGCAA
GGTCGGCGGGACGAAGATGAACGCAGAGTCTAGTCGCTCGCACTCCATCT
TCAGCGTCTTACTGGAGGTG
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