mRNA_H-paniculata_contig5729.13284.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5729.13284.1
Unique NamemRNA_H-paniculata_contig5729.13284.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: A0A6H5K4L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 6.390e-28
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 3 
Query:   36 MKKFLMDVRKRNLFVGLSVLGMVGAMASLPYYIRTKAKKSLYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTRRWKGEYN 287
            M+ +   VR+RNL VG+++ G   AMASLP+ +R +  KSLYDSEEGLTG+QIQRG FMN+GSKD+GRD +W K+TR W G  N
Sbjct:    1 MRNYFSSVRQRNLAVGVAICGFSAAMASLPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDHDWSKETREWAGRRN 84
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: A0A8J5XI83_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XI83_DIALT)

HSP 1 Score: 68.6 bits (166), Expect = 4.410e-11
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  102 VGAMASLPYYIRTKAKK---SLYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTRRWKG 278
            +G  + LP+Y+  + ++   +LY  ++ L+G QI RGP++NTGSKD+G DP+WD  T R+KG
Sbjct:   22 LGVSSMLPFYLHDRQRRLAGNLYSRDKPLSGNQIMRGPYINTGSKDVGPDPDWDHSTGRYKG 83
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: A0A482RF47_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RF47_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 1.800e-10
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 3 
Query:   60 RKRNLFVGLSVLGMVGAMASLPYYIRTKAK-KSLYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTRRWKG 278
            R+  LFV      M G+ A  P+Y+R + +  +L  S++ LTG+QI RG +MNTGSKD+GRDP+WD  T R+ G
Sbjct:   25 RRAGLFV------MAGSFALAPFYLRYRNQGNNLTLSDKPLTGSQIMRGAYMNTGSKDVGRDPDWDAATGRYMG 92
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: A0A7S1XNK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNK1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.830e-10
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 3 
Query:   66 RNLFVGLSVLGMVGAMASLPYYIRTKAKKSLYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTR 266
            RN    + +LG    MA++P+ +  K  ++L + ++ LTGTQ+QRGPFMN+GSKD+GRDP W KD R
Sbjct:   46 RNTATLVVLLGGCAVMAAVPF-LSMKTTENLMNRDKALTGTQVQRGPFMNSGSKDVGRDPNW-KDGR 110
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: A0A5A8E2E3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2E3_CAFRO)

HSP 1 Score: 66.2 bits (160), Expect = 5.540e-10
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 3 
Query:   99 MVGAMASLPYYIRTKAKKSLYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTRRWK 275
            + G  AS+P+   TK++  L D E  LTGTQIQRG F+N+GSKD+G DP+WD  T  +K
Sbjct:   21 VAGGFASIPFLF-TKSQVRLTDKEGSLTGTQIQRGAFLNSGSKDVGVDPDWDLKTGTYK 78
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: A0A2R5GU17_9STRA (Protein N-lysine methyltransferase METTL21A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU17_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.500e-9
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 3 
Query:   63 KRNLFVGLSVLGMVGAMASLPYYIRTKAKKS---LYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTRRWKG 278
            +RNL     ++G +G  AS+P +   K K++   L   E  LTG Q+ RG ++NTGS+D G DP+WD + R W+G
Sbjct:    4 RRNLATAAGLVGFIGLCASVPMWYSNKLKQAQVNLQQQENALTGNQVIRGAYLNTGSRDAGVDPDWDFERRVWRG 78
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: A0A1V9YCV8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCV8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.670e-9
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3 
Query:   63 KRNLFVGLSVLGMVGAMA-SLPYYI-RTKAKKSLYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTRRWKG 278
            +  L VGL+V G  G ++ SLP++I ++K  ++    E  L+ +QI+RG +MNTGSKDIGRDP+WD  T  +KG
Sbjct:    3 RNKLAVGLAV-GAGGLLSFSLPFWIVQSKKDQNTMSMEGPLSTSQIRRGVYMNTGSKDIGRDPDWDLTTNTYKG 75
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: F0WCJ2_9STRA (Uncharacterized protein AlNc14C59G4372 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCJ2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.210e-8
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 3 
Query:   60 RKRNLFVGLSVLGMV--GAMASLPYYIRTKAKKSLYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTRRWKG 278
            RK    V ++VL ++  GA  S+PY       ++   +E+ L+ +Q++RG ++NTGSKDIG DP++D  TR W G
Sbjct:    5 RKARGDVVVAVLALITAGAFFSVPYLSHYLKTENYQTTEKALSSSQVRRGAYLNTGSKDIGPDPDYDAKTRTWNG 79
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: A0A7S1V5N7_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V5N7_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.990e-8
Identity = 30/64 (46.88%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:   93 LGMVGAMASLPYYIRTKAKKSLYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTRRWKGEY 284
            LG+V  M  +PY    K    + + E+GLT +Q++RG FMN+GS+D+GRDP+WD      KGEY
Sbjct:   50 LGLVAVMGIVPY-ASVKLIGGMAEREDGLTQSQVRRGAFMNSGSRDVGRDPQWDFR----KGEY 108
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BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Match: A0A067C630_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C630_SAPPC)

HSP 1 Score: 57.8 bits (138), Expect = 3.130e-7
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 3 
Query:  117 SLPYYI-RTKAKKSLYDSEEGLTGTQIQRGPFMNTGSKDIGRDPEWDKDTRRWKG 278
            S+P+ I ++K  ++    E  L+ +QI+RG +MNTGSKDIGRDP+WD  T  +KG
Sbjct:   25 SMPFLIVQSKKDQNTMSMEGPLSTSQIRRGVYMNTGSKDIGRDPDWDLTTNSYKG 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5729.13284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4L5_9PHAE6.390e-2859.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5XI83_DIALT4.410e-1145.16Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A482RF47_9ARCH1.800e-1047.30Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1XNK1_9STRA3.830e-1049.25Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5A8E2E3_CAFRO5.540e-1052.54Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A2R5GU17_9STRA2.500e-941.33Protein N-lysine methyltransferase METTL21A n=1 Ta... [more]
A0A1V9YCV8_9STRA5.670e-947.30Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
F0WCJ2_9STRA2.210e-840.00Uncharacterized protein AlNc14C59G4372 n=1 Tax=Alb... [more]
A0A7S1V5N7_9STRA3.990e-846.88Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A067C630_SAPPC3.130e-749.09Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5729contigH-paniculata_contig5729:464..3521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue5.9e-07
Seed eggNOG ortholog653948.CCA18909
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E2XB@1,2SA3B@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_001530.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size910
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5729.13284.1prot_H-paniculata_contig5729.13284.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5729 1081..3486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930616.2511032-UTR-H-paniculata_contig5729:463..10801622930616.2511032-UTR-H-paniculata_contig5729:463..1080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5729 464..1080 -
1691481373.8155863-UTR-H-paniculata_contig5729:463..10801691481373.8155863-UTR-H-paniculata_contig5729:463..1080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5729 464..1080 -
1622930616.3159726-UTR-H-paniculata_contig5729:3486..35211622930616.3159726-UTR-H-paniculata_contig5729:3486..3521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5729 3487..3521 -
1691481373.8420386-UTR-H-paniculata_contig5729:3486..35211691481373.8420386-UTR-H-paniculata_contig5729:3486..3521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5729 3487..3521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930616.276042-CDS-H-paniculata_contig5729:1080..12251622930616.276042-CDS-H-paniculata_contig5729:1080..1225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5729 1081..1225 -
1691481373.825725-CDS-H-paniculata_contig5729:1080..12251691481373.825725-CDS-H-paniculata_contig5729:1080..1225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5729 1081..1225 -
1622930616.2973812-CDS-H-paniculata_contig5729:3373..34861622930616.2973812-CDS-H-paniculata_contig5729:3373..3486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5729 3374..3486 -
1691481373.8340552-CDS-H-paniculata_contig5729:3373..34861691481373.8340552-CDS-H-paniculata_contig5729:3373..3486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5729 3374..3486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5729.13284.1

>prot_H-paniculata_contig5729.13284.1 ID=prot_H-paniculata_contig5729.13284.1|Name=mRNA_H-paniculata_contig5729.13284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MKKFLMDVRKRNLFVGLSVLGMVGAMASLPYYIRTKAKKSLYDSEEGLTG
TQIQRGPFMNTGSKDIGRDPEWDKDTRRWKGEYNN*
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mRNA from alignment at H-paniculata_contig5729:464..3521-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5729.13284.1 ID=mRNA_H-paniculata_contig5729.13284.1|Name=mRNA_H-paniculata_contig5729.13284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3058bp|location=Sequence derived from alignment at H-paniculata_contig5729:464..3521- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCAGCATCACAAGCTATCGTGGTGTGCTGCGCAATGAAGAAGTTCTTA
ATGGACGTGCGAAAGAGGAATCTCTTTGTTGGATTATCTGTACTTGGAAT
GGTGGGAGCTATGGCGTCGCTTCCATACTACATTCGGACAAAAGCGAAGT
GAGTCCGTAGACAGCTGGGTTTGCAGGCCAGGAATAAGCCATTACTTTCC
AGTCAATATAATAGCCAGGTCTCAGCTTTCGGGAGAAAGCCTCATAGCGC
ACAAGCAGCGGTTGAGGACTCGGCGTTGTAACTCAATGCTGCAGACGGCC
ACTTCCTTTAGCAGGGCCTAGTCTTGATATTTTCTCGTTCTGGGTCAAAG
CTATGTTGTTTAGTGCTTGTAGTGAGGGGTATGGACAGTGGGTACAAATA
TCAAATACAGATAATTGAAACACTTGACCCTGTCTCGAGCTTGGTCAGTT
CAAATTCAAGCCAGTTATCACCAGCTATCGTTCTGGCAACAGTTCAGGTA
CACCATCTCTGCAGTCGATATACATGTGTAGAATAGATATATGATCGATA
CAACTGTATGCAACCGTGGCCTGCCATTTGATGGTGTCGAACAACGATAA
TTGCTGAGCTGTCATCCTGTTGCGGTATTTGCAGTTCAAGGCCCGATCTC
ATTCGACTGTCAGTATGGAGACAGGGCAGACCAATTTGCAGTTCTTCACA
ATGCATCTCACCGAGCATGTTAAAAACACAACCGTTTTCCTGCTCAAGTG
GTCGAATCTGCCCTTCTAAATAAGCGCGTCGACTCTTGTCTCGCAGACGC
TCGCGCCTCTATGATTGAACACCAGCATGCTCTTAGAAGAGCTTCAGAGT
GACAATTTTTTCTACATGCAGCACGGGCTCGATCCACATTGCTACTTTAT
AACCGTGTATTACGAACGAGGCTTACAATCCTTACTCGGAAGTTCCGTGT
TTAAGTAGCAGCACAAGCTCTCATTTCTATCTTCCTTACTTTTCAGCTCC
TGCCACTACCTCTCTGTAGCCTCAAAATTAGATACTAATCAGCTGTGCAT
CACAGAACTTGTTCTGTATGAAAAAATGCAGTCTTGCACTGTTCACTGTT
GTGTGCTCTTGTAGACGATATCCAGGAAGTAGACTACCCGCACTTGCCAC
ATCACACCAGTGTCCAACCCCTAAAAACAACGCAGACGTTATCCCGCCTG
GTCCAAGTTGAGGATAGTCGGGTTTCCGTGCCCTCCCCGCTGTGCTACTG
AAGGTTTCGCCTCACCACTGTGCCCCTGTCTCTCCCTTGTCACAACATTA
CCCCTTCCCCCCAGCTCTTCAATAGAATTATTCATACTCGTCCGGCTCAT
TTTTAGCAGCACCCACGCCCCCAAAGTGCTGCACTCTCGTATGTGCCATG
CGCATCTAGCGGTTGCCTCAGGCTGACGGTACTCTGGTCATACCCCAAAG
CCAACTGTCGTATACTTGGCTCGCACGCGCTTGTACCCTTCAGCGAGTCT
ACATGTATATATCACCCATTAAGAGCAACAACGCATATCGAATGAGTCGA
CAAGCCCTGCTGATTTAGATTCTTCAAGATGAATCCATCGGAAATCGTGG
CCTTCGGTCTGGGCTTGTATTCCGATTGAGCTACGGCGGGTGGAGCCTGC
GGCATCATCTGCGAAATGACGTGCGCAGTCGAAAGACGCGACTGCCCCAG
TTCCGTGGCTATTCTGTCGTGCTGAAATACCTCCGTGACAAAGCCTGTAG
AACTGAGTCGCTCAACACTTCGTCTATTATCCCGAGTTCCTCGTATTTAG
TATATATGTTATTCATCACCCCGTCATTACTTAGTTTTGGCGATAGTGAG
TGGTGACACTCTCTTCTTAAAAAACTTCACGTTTCCCGAGTTTGAGACTC
GATTGCTCATGTTTTTTAGTATCAGACTCATCCTGTACCGTTTCTACGAC
ATGTTTTTGTTGACCATTGTGAGCTGCGTGTGCATCGTGGGTACGCTGTG
CTAAAATGATGCTTCAAGAATTTTTATTCTTGCTGTGGTGCTTTTTGCGT
TTTTTTCTGCGCTTGTCACTGTTGTAACGCTGTAGCTGTCACCTCTGTTA
CCCGACATTGCGTAGGTACATCATCACAGCAATGTAAATTCCGTAGCAGC
ACAGCTGAACACGATCGGCGTCCAGCCGGACAAACAAGTGCGCAAAACAC
ACGCCAAATTGCGGATATGTGCAATCTAGGGTTACCGTTCGAAACTTACT
GCTCCCTTTCCCCCCCCCGCCACGGTTAACGGATAAAAACCAACAGGAAA
TCGTTGTACGATAGCGAGGAGGGATTGACGGGCACGCAGATCCAACGCGG
ACCCTTCATGAACACGGGCAGCAAAGATATCGGGCGAGATCCAGAGTGGG
ATAAGGACACACGACGGTGGAAAGGAGAGTACAACAACTGATGATGATTT
CAAGCTGTGCTTCGGTCGTTGTAATGTCGGGCGAGTTGGACTGGATGGAC
CCAAGAAGGGGGCATGGCGAGATTCACAGCGGACGATCGACCCTCCACGT
TTTTTTCACATTCGCGACACCAGAGATGGCCTTGAACGGAGGAGGTGGAG
CAGCAAGCATCTTCGTCTAGATATTTTCCATGCCCTTGCGGGGCTGTTGT
CGCTTGTTCAGCTGCTGACAGCAACAGCGTACTCCCACTCAGAACTCCGG
AGGAACCTGTTGTCGGACGATACGTCCTACATGAGAGCGCCGCATGTCAA
CATTTCCGGCGTACTCTGTGTGGTCAATTTTTTCACCTAGAAAAATATCG
GTTCTTGAAGGGGGCGTTTTAAATAACTTTTCTCATCGCGGACCACCAGC
ACTTGCCTATACATTATCGCCAGAGTTTCGCAATGTCGAAAGGGTCGGCT
AAGAGAAATTTGAAGCAGATGACACACGTAGCCGTGGCGGCTACAAGTAT
AGCATGATCGTCTTCGGGGGGGACAGGAACGACGAGCGACGATGGCCACA
ACCATTTGTACAAAATACGAATATACCCCCACCTTTATTTATGTGGTAGT
TGACCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5729:464..3521-

>mRNA_H-paniculata_contig5729.13284.1 ID=mRNA_H-paniculata_contig5729.13284.1|Name=mRNA_H-paniculata_contig5729.13284.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig5729:464..3521- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAGTTCTTAATGGACGTGCGAAAGAGGAATCTCTTTGTTGGATT
ATCTGTACTTGGAATGGTGGGAGCTATGGCGTCGCTTCCATACTACATTC
GGACAAAAGCGAAATGAAGAAGTTCTTAATGGACGTGCGAAAGAGGAATC
TCTTTGTTGGATTATCTGTACTTGGAATGGTGGGAGCTATGGCGTCGCTT
CCATACTACATTCGGACAAAAGCGAAGAAATCGTTGTACGATAGCGAGGA
GGGATTGACGGGCACGCAGATCCAACGCGGACCCTTCATGAACACGGGCA
GCAAAGATATCGGGCGAGATCCAGAGTGGGATAAGGACACACGACGGTGG
AAAGGAGAGTACAACAACTGAGAAATCGTTGTACGATAGCGAGGAGGGAT
TGACGGGCACGCAGATCCAACGCGGACCCTTCATGAACACGGGCAGCAAA
GATATCGGGCGAGATCCAGAGTGGGATAAGGACACACGACGGTGGAAAGG
AGAGTACAACAACTGA
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