mRNA_H-paniculata_contig5727.13282.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5727.13282.1
Unique NamemRNA_H-paniculata_contig5727.13282.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5727.13282.1 vs. uniprot
Match: A0A6H5K7P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P8_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.880e-17
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 2 
Query:   50 IVTMSLYTGSVFSRLSKRSGISESSPLAMHLGNDNAMRKLLRDGVGIKDLQKTYLTLCYVS 232
            IV MSL+ GSVFSRLSK+S I  ++ LA+HL ND AMR+LLRDGVGI ++QK YL+LCYVS
Sbjct:   58 IVGMSLHGGSVFSRLSKQSAIRNTTQLAVHLSNDTAMRRLLRDGVGINEMQKKYLSLCYVS 118
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BLAST of mRNA_H-paniculata_contig5727.13282.1 vs. uniprot
Match: D8LBL5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.030e-16
Identity = 39/56 (69.64%), Postives = 49/56 (87.50%), Query Frame = 2 
Query:   59 MSLYTGSVFSRLSKRSGISESSPLAMHLGNDNAMRKLLRDGVGIKDLQKTYLTLCY 226
            MSL+ GSVFSRLSK+S I +++ LA+HL NDNAMR+LLRDGVGI ++QK YL+LCY
Sbjct:    1 MSLHGGSVFSRLSKQSAIRDTTQLAVHLSNDNAMRRLLRDGVGINEMQKKYLSLCY 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5727.13282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7P8_9PHAE7.880e-1768.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBL5_ECTSI5.030e-1669.64Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5727contigH-paniculata_contig5727:898..3303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2880.D8LBL5
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size241
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5727.13282.1prot_H-paniculata_contig5727.13282.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5727 898..3245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930616.1489418-CDS-H-paniculata_contig5727:897..10241622930616.1489418-CDS-H-paniculata_contig5727:897..1024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5727 898..1024 -
1691481373.786828-CDS-H-paniculata_contig5727:897..10241691481373.786828-CDS-H-paniculata_contig5727:897..1024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5727 898..1024 -
1622930616.1648865-CDS-H-paniculata_contig5727:3189..32451622930616.1648865-CDS-H-paniculata_contig5727:3189..3245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5727 3190..3245 -
1691481373.7985907-CDS-H-paniculata_contig5727:3189..32451691481373.7985907-CDS-H-paniculata_contig5727:3189..3245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5727 3190..3245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930616.1929832-UTR-H-paniculata_contig5727:3245..33031622930616.1929832-UTR-H-paniculata_contig5727:3245..3303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5727 3246..3303 -
1691481373.8068442-UTR-H-paniculata_contig5727:3245..33031691481373.8068442-UTR-H-paniculata_contig5727:3245..3303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5727 3246..3303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5727.13282.1

>prot_H-paniculata_contig5727.13282.1 ID=prot_H-paniculata_contig5727.13282.1|Name=mRNA_H-paniculata_contig5727.13282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MSLYTGSVFSRLSKRSGISESSPLAMHLGNDNAMRKLLRDGVGIKDLQKT
YLTLCYVSSC*
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mRNA from alignment at H-paniculata_contig5727:898..3303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5727.13282.1 ID=mRNA_H-paniculata_contig5727.13282.1|Name=mRNA_H-paniculata_contig5727.13282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2406bp|location=Sequence derived from alignment at H-paniculata_contig5727:898..3303- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCTCCTTATCACTTGACCCGAGATAGCTGAGGGGAGGACAGCCGTGCTA
TTGTTACAATGAGCCTATATACTGGAAGCGTGTTCAGCAGATTGAGCAAG
CGCTCAGGGATTAGGTAAGCTCTAAAAAAAGTGACTACTAGTTGTACTGT
AAATGTCTCTACTGTTGTGACCTGGTTGTGAATGACACCGTATGTTTGCC
CTGGAGATGGTGCGACCGTTGGGGTTTCCGGTTCTTCAGCTTCGCCCGTT
GCAATGATCCGTTTATGTTGGTTAGGCGCAACGACTCCGTTTGCCGGTCT
TTGGATCGAGTCGGCGGTGATGAGCAGGCCTGTCAGATCTTCTCTCCTCG
CACACGAAAAGATAATGCGGCTTTGTAATTGATCAACGGACTCGGGTGTC
ACCATGAAAGTTAAATCATGCTGTACCAGGTACTGAGTATGAAACGGACA
ATCTGCACTACTGTCTGTTGCACCGACTGTTGGGCAATCTATTTAGGGTC
GTACCCTCTGAGGAATTCAACACCTTCAACGGCGTGCGAGCTTGCCTGCG
GCACCAAGACTCGTAAAGAAAACTCTTACCCCAGTGTTGTTGTCGGTTCC
ATTAGCTTCTGGGAACATTTCAAGGGTAACATTTAGGGTGCTGTTAAAAG
TAAGGAGAGTCATCGCCGGGTGCGGGGTTGTCGTTGGTTGGGGAGGATAG
CACATCCCTTTCCCCCCATGCACACACCCTCTGTCATAATCCAATCAGCT
TCTGTTAAGTATGCGAGAAGGTTTCGACGGCCTGTTTTTTTTCATATTGT
TATTCTCATTCACCTCTGAGTTGTCACAAAAATCTACATCTAGCAAGAAC
GGCTTGGGCAAAGGGGGGAGGGTCACCAAAAATTACATCACAAAAGAAGG
GTGGTACACAAGGTTGGTTGCATGTATCCACGAGTAGTTGGTTTAAGGGT
AAGCATAAATGGTAAGGCAGACAACCCATACGGAACACGGGAACAATGCA
AGAGAGCTATATGGTACCACTCTAATACAGAGTGGTAGTGAATGTGATAA
TCTGCGTACGGAAGACACCCTATCATGTCAACGGCGATGAAAATTGTATG
TGCGTGAAGAGCTTTCCCGTACCCCCAATCATAAAAGTGTGGTATGTACC
TGGCATCGAGGTTTCTGCATGCTTCTCCTTAGTACCAGCAGTGCTCATGT
GAGCCATTTTAAACGTATTGCTCTTATCTGTTATCCCCCCCCCCTCCCCC
CCCTCCCCCCCCTGTTCTCCAAACTTCAAAATTTCATACTTGAAAAATGA
AATTTGCGAAATTTCGGAAGTGAGGCATATAAACCCCGTGTACTACATAC
GATTACAGATGATGTCCAGAACCTGTTCCGCTCGCAAACGGCGTAAGGCG
CCGATTTGAGCCCTGCCAATCCACTCTAGGCCTGAGGAGGTGGTGGATGG
GGGGGTCAGGGTTAGGGGTATCGTCATCAGGCACTGTCCTATTTTATTGG
TTATTTGCCTTTCAGCGGGCAAAACCTGCTGTGCTGCACTGCGTGTCTGT
ACCCTACTCTCTATATATGAAAGATCGGGCCAAACTAATTTTGGGGGACA
ATAGCACAAAAAATATTTTCCAACTGTGTGTCGGGCAGTAGTTGAATTTT
GTAAAAACATGAACAAACACGGTCCAGTTAACGTTGGATGAATCAGAATT
GAATTGCCACAGTTAACCTTCAAGTATTGTCATTATATCTATCCGGTAGG
TTAGATATACCTATTTGCGTCTTGTTCGTACTCCCCTGTTGTTGGATGTA
CCGTTTTTCCAGGAAGAAGAGTATATCATGCGCATGGTGAACACACATAC
ACACACACACACACACACACACACACACAGGCATGATGAAGTGCGTGAAA
CATTTTTGGATTATGATTTTTTTTTTCGCGTTCATCTTGGTCGTCTGAGT
TGCTCTGGGTGGGAGACAAACCCTTGGTTGGTGACTGCCGGGACTGTAAT
AAGTTTCGTCTGGGTAAAGTGACGCAAAAAGCCAGGTTGACGCACCTCCA
CTGCTTCTTCCACAATGCTAGACGGCAAAACCGAAGCTGTCGTTCATCAC
ATGCGGGCGGGTCAGAGTTGTCCGTGTTTAGGCACCAAGGAGATGTATGC
AAAAAAAAATAGCTCCATTAGTTGCCGTCATATTATCTACATGTATTCCC
CGACCTTTGAATATATATATATACATATTTGTATATAATATGCCAATATC
TAAGCAATTTTTTACTTTTTGTACGGCAGCGAATCGAGTCCCCTGGCAAT
GCACCTCGGTAACGACAACGCTATGAGGAAGCTCCTCCGAGACGGTGTGG
GGATCAAAGACCTGCAGAAGACATACCTCACGCTGTGCTACGTAAGTTCT
TGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5727:898..3303-

>mRNA_H-paniculata_contig5727.13282.1 ID=mRNA_H-paniculata_contig5727.13282.1|Name=mRNA_H-paniculata_contig5727.13282.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig5727:898..3303- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCTATATACTGGAAGCGTGTTCAGCAGATTGAGCAAGCGCTCAGG
GATTAGATGAGCCTATATACTGGAAGCGTGTTCAGCAGATTGAGCAAGCG
CTCAGGGATTAGCGAATCGAGTCCCCTGGCAATGCACCTCGGTAACGACA
ACGCTATGAGGAAGCTCCTCCGAGACGGTGTGGGGATCAAAGACCTGCAG
AAGACATACCTCACGCTGTGCTACGTAAGTTCTTGTTGACGAATCGAGTC
CCCTGGCAATGCACCTCGGTAACGACAACGCTATGAGGAAGCTCCTCCGA
GACGGTGTGGGGATCAAAGACCTGCAGAAGACATACCTCACGCTGTGCTA
CGTAAGTTCTTGTTGA
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