mRNA_H-paniculata_contig57269.13281.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57269.13281.1
Unique NamemRNA_H-paniculata_contig57269.13281.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57269.13281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57269contigH-paniculata_contig57269:424..741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930616.025347-CDS-H-paniculata_contig57269:423..7411622930616.025347-CDS-H-paniculata_contig57269:423..741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57269 424..741 +
1691481373.7612002-CDS-H-paniculata_contig57269:423..7411691481373.7612002-CDS-H-paniculata_contig57269:423..741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57269 424..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57269.13281.1prot_H-paniculata_contig57269.13281.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57269 424..741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57269.13281.1

>prot_H-paniculata_contig57269.13281.1 ID=prot_H-paniculata_contig57269.13281.1|Name=mRNA_H-paniculata_contig57269.13281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
PLRDADLSGRVSPWSSCSRTRAQSYLGYWSPTPNCSANSGSIPFGSRFLL
GAGANAYRMANAFRPSSLSSPFLPRADGLSTKRYRTRRISNVGCETRAVD
GLEAT*
back to top

mRNA from alignment at H-paniculata_contig57269:424..741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57269.13281.1 ID=mRNA_H-paniculata_contig57269.13281.1|Name=mRNA_H-paniculata_contig57269.13281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig57269:424..741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTTCGTGACGCTGACCTCAGCGGAAGGGTATCGCCATGGTCGAGTTG
TTCTCGTACACGCGCCCAAAGTTATCTGGGATATTGGTCGCCAACTCCAA
ACTGCTCCGCTAATTCTGGCTCAATCCCTTTCGGAAGCCGTTTCTTACTG
GGAGCTGGTGCTAACGCGTACCGTATGGCCAACGCATTTCGACCTTCCTC
GCTCAGCTCGCCATTTTTACCCCGGGCTGATGGGCTCTCGACAAAAAGAT
ACCGGACTCGCCGGATTAGTAATGTTGGTTGCGAAACTCGCGCCGTAGAC
GGTCTGGAGGCTACATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig57269:424..741+

>mRNA_H-paniculata_contig57269.13281.1 ID=mRNA_H-paniculata_contig57269.13281.1|Name=mRNA_H-paniculata_contig57269.13281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig57269:424..741+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCTTCGTGACGCTGACCTCAGCGGAAGGGTATCGCCATGGTCGAGTTG
TTCTCGTACACGCGCCCAAAGTTATCTGGGATATTGGTCGCCAACTCCAA
ACTGCTCCGCTAATTCTGGCTCAATCCCTTTCGGAAGCCGTTTCTTACTG
GGAGCTGGTGCTAACGCGTACCGTATGGCCAACGCATTTCGACCTTCCTC
GCTCAGCTCGCCATTTTTACCCCGGGCTGATGGGCTCTCGACAAAAAGAT
ACCGGACTCGCCGGATTAGTAATGTTGGTTGCGAAACTCGCGCCGTAGAC
GGTCTGGAGGCTACATGACCGCTTCGTGACGCTGACCTCAGCGGAAGGGT
ATCGCCATGGTCGAGTTGTTCTCGTACACGCGCCCAAAGTTATCTGGGAT
ATTGGTCGCCAACTCCAAACTGCTCCGCTAATTCTGGCTCAATCCCTTTC
GGAAGCCGTTTCTTACTGGGAGCTGGTGCTAACGCGTACCGTATGGCCAA
CGCATTTCGACCTTCCTCGCTCAGCTCGCCATTTTTACCCCGGGCTGATG
GGCTCTCGACAAAAAGATACCGGACTCGCCGGATTAGTAATGTTGGTTGC
GAAACTCGCGCCGTAGACGGTCTGGAGGCTACATGA
back to top