mRNA_H-paniculata_contig57260.13280.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57260.13280.1
Unique NamemRNA_H-paniculata_contig57260.13280.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: A0A0C9RAA9_9HYME (POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RAA9_9HYME)

HSP 1 Score: 204 bits (518), Expect = 1.470e-56
Identity = 117/301 (38.87%), Postives = 178/301 (59.14%), Query Frame = 1
Query:   13 NGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLPLECSPFSQDIPFVRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDD-LVIAGRREKVDEFKHNTSQCFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISAPESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDIAYAV 912
            N TW    L +LP G++AI TKW+FK K   +G++ RYKARLV +G SQ  G D+ +T +PV R ++LR +F++AA+HD  +  +D   A+L+  + EE+F+K P     +S +   V RL KSL  LKQ+ + WN+ L +  + +GL  S  D C+YF   ++  + + VA+Y+DD LV +  ++     K+  S   +MKD+GS S VLG+ ++RD     I + Q  YI  VLKR+G D+C  V TP++   K++  +   K  E K K    + Y   VGS +Y +   RPDI++AV
Sbjct:  262 NRTWV---LTKLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQP---EGYSDNSGRVCRLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSEY--SMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMDDCNAVATPLDLSQKLTL-DMCPKSEEEK-KEMEKVPYMEAVGSLLYAAQNTRPDISFAV 552          
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: A0A034VP70_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034VP70_BACDO)

HSP 1 Score: 204 bits (518), Expect = 1.370e-55
Identity = 117/301 (38.87%), Postives = 178/301 (59.14%), Query Frame = 1
Query:   13 NGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLPLECSPFSQDIPFVRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDD-LVIAGRREKVDEFKHNTSQCFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISAPESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDIAYAV 912
            N TW    L +LP G++AI TKW+FK K   +G++ RYKARLV +G SQ  G D+ +T +PV R ++LR +F++AA+HD  +  +D   A+L+  + EE+F+K P     +S +   V RL KSL  LKQ+ + WN+ L +  + +GL  S  D C+YF   ++  + + VA+Y+DD LV +  ++     K+  S   +MKD+GS S VLG+ ++RD     I + Q  YI  VLKR+G D+C  V TP++   K++  +   K  E K K    + Y   VGS +Y +   RPDI++AV
Sbjct:  781 NRTWV---LTKLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQP---EGYSDNSGRVCRLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSEY--SMVYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMDDCNAVATPLDLSQKLTL-DMCPKSEEEK-KEMEKVPYMEAVGSLLYAAQNTRPDISFAV 1071          
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: A0A0V1GS48_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Trichinella TaxID=6333 RepID=A0A0V1GS48_9BILA)

HSP 1 Score: 203 bits (517), Expect = 2.160e-55
Identity = 119/312 (38.14%), Postives = 188/312 (60.26%), Query Frame = 1
Query:    1 ALVENGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLP------LECSPFSQDIPF-VRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDDLVIAGRRE-KVDEFKHNTSQCFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISAPESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDIAYAV 912
            ALV+N TWE   +   P  +K I  +W++  K+  DGS+ + KARLVA+G  Q    DF +T APVAR+S++RT+ +++A +   +  +D  +AYL+  + EE+++++P      L+CS   Q++   V R+RK+L  LKQSG+ W   L++  +  GL  ++ D C+YF R   G    + A+Y+DD++IA     +++E K   S+ F MKD+G +   LGIE+++   NG I +SQ  YI  +L+R+G    + V TP++   K+SA E+  K    K +  N + YR +VGS MY+S   RPDIA+AV
Sbjct:  893 ALVKNNTWE---IVNRPQRQKVITCQWVYNTKVNADGSIKQRKARLVAKGFLQRPNIDFHETYAPVARLSSIRTILAISANYGLTVHQLDFVSAYLNGEIEEEIYMEIPEKLDEVLKCSKMKQNLDGKVCRIRKALYGLKQSGRQWYKKLDEKLLQYGLKATSGDPCVYFERR--GRELTIAAIYVDDVIIASNNTARMNELKKTLSKSFEMKDMGPIHYCLGIEIKQSA-NGDIEMSQQKYIMDILERFGMRNSKPVGTPIDASNKLSA-ETCPKTEAEKAEMQN-MPYRSLVGSLMYLSVSTRPDIAFAV 1196          
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: C6JRI2_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRI2_SORBI)

HSP 1 Score: 196 bits (499), Expect = 4.190e-54
Identity = 110/305 (36.07%), Postives = 174/305 (57.05%), Query Frame = 1
Query:    1 ALVENGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLPLECSPFSQDIPFVRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDDLVIAGRREKV-DEFKHNTSQCFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISAPESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDIAYAV 912
            +++ NGTWE  D    P G K +  KW+FK+KL+ DG++ +YKARLVA+G +Q +GED+F T +PVAR++T+R + SLAA H F +  MDV  A+L+  + EE+++  P       Q+   V +L KSL  LKQ+ + W+   +      G   +  D C+Y+     G   +++ +Y+DD++I G   KV  E K   S  F MKDLG    ++ I+L R+  NG +T+ Q  Y+  VL R+G+ EC   PTP +   ++       +         + + Y  ++GS MY+++  RPDI++AV
Sbjct:  211 SIMSNGTWEVVDR---PFGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSLAASHGFLIHQMDVKTAFLNGELEEEIYMDQPDGFIANGQEGK-VCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRFG--GGDGVILCLYVDDILIFGNNLKVIKEVKEFLSNNFEMKDLGEADVIVNIKLSREEGNGWVTLMQSHYVEKVLNRFGYSECTPAPTPYDPSVRLRKNHRIAR---------DQLRYSQIIGSLMYLASATRPDISFAV 500          
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3)

HSP 1 Score: 199 bits (506), Expect = 6.150e-54
Identity = 117/301 (38.87%), Postives = 173/301 (57.48%), Query Frame = 1
Query:   19 TWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLPLECSPFSQDIPFVRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDDLVI-AGRREKVDEFKHNTSQCFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISAPESADKPSEPKGKSGNSI--EYRGMVGSPMYVSTGARPDIAYAV 912
            TWE +DL   P  RKAI  +W+F RK  E+G + RYKARLVAQG SQ+ G DF  T APV R  +LR + ++AA  + E++ +DV  AYL+  + EE+F++ P     F      V RL+K+L  LKQSG+ WN  L+     +    S  D C+Y  R + G T+  + V++DDL+I   + ++++E K    + F + DLG    ++G+E++RD     I++ Q SY+  +LK+YG + CR V TP++    ++     D   EP+      +   Y   VGS MY + G RPDIAYAV
Sbjct:  759 TWELDDL---PPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQP---DGFHDGTSKVCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYI-RTENGHTSY-ITVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAV 1051          
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: A0A0A1WXQ3_ZEUCU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WXQ3_ZEUCU)

HSP 1 Score: 199 bits (506), Expect = 6.210e-54
Identity = 115/301 (38.21%), Postives = 177/301 (58.80%), Query Frame = 1
Query:   13 NGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLPLECSPFSQDIPFVRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDD-LVIAGRREKVDEFKHNTSQCFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISAPESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDIAYAV 912
            N TW    L +LP G++AI +KW+FK K   +G+  RYKARLV +G SQ  G D+ +T +PV R ++LR +F++AA+HD  +  +D   A+L+  + EE+F+K P     +  +   V RL KSL  LKQ+ + WN+ L +  + +GL+ S  D C+Y+       + + VA+Y+DD LV +  +E     K+  S  F+MKD+GS+S VLG+ ++RD     I + Q  YI  VLKR+G ++C  V TP++   K++  E   +  E K K    I Y   +GS +Y +   RPDI++AV
Sbjct:  800 NKTWV---LTKLPKGKRAINSKWVFKTKRNAEGAFVRYKARLVVKGCSQKQGIDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQP---EGYDDNSGRVCRLLKSLYGLKQASKVWNDKLNEALISLGLNRSEVDQCIYYCVSK--HSMVYVAIYVDDVLVFSNDKEATQRIKNVLSSKFKMKDMGSVSSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMNDCNAVATPLDLSQKLTL-EICPQTEEAK-KEMEKIPYMEAIGSLLYAAQNTRPDISFAV 1090          
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 199 bits (506), Expect = 6.350e-54
Identity = 119/304 (39.14%), Postives = 173/304 (56.91%), Query Frame = 1
Query:    4 LVENGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLPLECSPFSQDIPFVRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDDLVIAGRR-EKVDEFKHNTSQCFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISAPESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDIAYAV 912
            + E GT+  EDL   PAGR  I  KW+F +K  EDG+++RYKARLVAQG SQ+ G D+ +T APV R+ ++R    +AA  D E+  MDV  AYL+  + EE++++ P     +      V RLRK+L  LKQSG+ WN   +     IG      D C+Y    +   T  ++ V++DDL+I     E + E K      F +KDLG   +++GIE++RD  NG I++SQ  YI GVL R+G    R V TP++    I    + D  ++P    G    Y+ ++GS +Y + G RPDI++AV
Sbjct:  905 IKEMGTYTKEDL---PAGRDTIGCKWVFLKKYDEDGNISRYKARLVAQGYSQIPGVDYTETFAPVVRLESVRAALGIAAIKDLEISQMDVKGAYLNGELEEEIYMRQP---EGYDDGSGRVCRLRKTLYGLKQSGREWNREFDRKLTSIGFSKLEADHCVYKRIREGRMT--IITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTRFGMQNARPVSTPLD-PNVILKKRTDDLVADPAMVGG----YQSVIGSLLYAARGTRPDISHAV 1195          
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 197 bits (502), Expect = 2.180e-53
Identity = 115/300 (38.33%), Postives = 170/300 (56.67%), Query Frame = 1
Query:   16 GTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLPLECSPFSQDIPFVRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDDLVIAGRREKV-DEFKHNTSQCFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISAPESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDIAYAV 912
            GTWE +DL   P  R A+  KW+F+RK  ++G V +YKARLVAQG SQ+ G DF +T APV R+ ++R + +LA  +++E+  MDV  AYL+  + EE++++ P     F      + RLRK+L  LKQSG+ WN  L      +G      D C+Y      GE  + + V++DDL++     K+ +E K +    F + DLG   +++GIE+ RD   G I ISQ  YI  +LKRY  +    V  P++     +A E  ++ ++ +   G    Y  MVGS MY + G RPDI+YAV
Sbjct:  937 GTWELQDL---PKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQP---EGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQI-ITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAVGMPLDPNVAFTA-EDENEEADDRLAGG----YASMVGSLMYAAVGTRPDISYAV 1224          
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: A0A6A4ZM73_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZM73_9STRA)

HSP 1 Score: 194 bits (494), Expect = 2.390e-53
Identity = 117/308 (37.99%), Postives = 185/308 (60.06%), Query Frame = 1
Query:    1 ALVENGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLPLECSPFSQDI---PFVRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDDLVIAGRREKVDEFKHNTSQC-FRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISAPESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDIAYAV 912
            +L EN TW   D+ +L  GRKAI +KW+FK K K DGS+ ++KARLVA+G SQ  G D+ +T APVA+ +++R + SLAA++  +L+ MDV  A+L+ ++ EE+++K+P      + D    P V RL+KSL  LKQ+ + WN T +D  +  G + S  D C+Y  R D  +  + +++Y+DDL++A    ++ +   N     F+M DLGSL   LGI++ R   +G++ I Q  +++ VL ++  + C+ V TP E   ++S  ++    +E +     S+ YR  VG  MY+    RPDIA AV
Sbjct:  327 SLRENETW---DVVKLLEGRKAIGSKWVFKVKEKADGSIDKFKARLVAKGFSQQYGVDYEETFAPVAKFASIRILLSLAAQYSLDLQQMDVKTAFLNGTLDEEIYMKIPEGLDVNNGDSKSGPLVLRLKKSLYGLKQAPRLWNKTFDDFMLSNGFNKSEADHCIYSKRTD--DDLMFISLYVDDLIMASNCPRLMKATKNALHGRFKMSDLGSLQYCLGIQVERST-SGSVFIHQQKFLQSVLVKFRMEHCKPVKTPQEPGQRLS--KTMSPVTEEEHLDMESVPYRSAVGCLMYLMVATRPDIATAV 626          
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Match: A0A034WM55_BACDO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034WM55_BACDO)

HSP 1 Score: 196 bits (498), Expect = 2.650e-53
Identity = 116/304 (38.16%), Postives = 176/304 (57.89%), Query Frame = 1
Query:   13 NGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQGVSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASVGEELFVKLPLECSPFSQDIPFVRRLRKSLNDLKQSGQNWNNTLEDCRVGIGLDHSTTDSCLYFSRDDWGETNLLVAVYIDDLVIAGRREKV-DEFKHNTSQCFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGVPTPVEGKGKISA---PESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDIAYAV 912
            NGTWE   L  LP G+KAI +KW+FKRK+  DG   RYKARLV +G +Q    D+ +T APV R +++R + +LA +++  +  MD  +A+L   + EE+++  P   S F      V +LRKSL  LKQS + WN  L    V  GL  S  D C+YF   D  +  L VAVY+DD+++     K+ ++ K   S+ F+MKDLG+ S VLG+ + ++   G + I Q +YI  V++R+G +EC  V TP++   K+SA   P + D+  E       ++ Y+  +G  ++ +   RPDI +AV
Sbjct:  371 NGTWE---LSALPMGKKAIPSKWVFKRKVNADGDPVRYKARLVVKGFNQKQHIDYDETFAPVVRYTSIRFLLALAVKYNLTVYQMDAVSAFLHGELKEEIYMTQP---SGFDDGSGRVCKLRKSLYGLKQSSRVWNIKLNSTLVSFGLQRSNVDQCVYFLVAD--KKMLFVAVYVDDVILFANDTKLLNKLKDKLSETFKMKDLGAASSVLGMRIAQNLKEGTLKIDQSAYIADVIRRFGMEECNPVGTPLDVNQKLSAEMCPTNDDEKREMA-----AVPYKQAIGCLLFAAQVTRPDICFAV 661          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57260.13280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C9RAA9_9HYME1.470e-5638.87POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus ... [more]
A0A034VP70_BACDO1.370e-5538.87Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1GS48_9BILA2.160e-5538.14Retrovirus-related Pol polyprotein from transposon... [more]
C6JRI2_SORBI4.190e-5436.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A067T5Q4_GALM36.150e-5438.87Integrase catalytic domain-containing protein (Fra... [more]
A0A0A1WXQ3_ZEUCU6.210e-5438.21Retrovirus-related Pol polyprotein from transposon... [more]
A0A284QR88_ARMOS6.350e-5439.14Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A401GYH9_9APHY2.180e-5338.33Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A6A4ZM73_9STRA2.390e-5337.99Integrase catalytic domain-containing protein (Fra... [more]
A0A034WM55_BACDO2.650e-5338.16Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57260contigH-paniculata_contig57260:74..1039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score199.1
Seed ortholog evalue2.9e-48
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size912
Cds size912
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930615.9662595-CDS-H-paniculata_contig57260:73..8911622930615.9662595-CDS-H-paniculata_contig57260:73..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57260 74..891 +
1691481373.7404935-CDS-H-paniculata_contig57260:73..8911691481373.7404935-CDS-H-paniculata_contig57260:73..891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57260 74..891 +
1622930615.9800053-CDS-H-paniculata_contig57260:945..10391622930615.9800053-CDS-H-paniculata_contig57260:945..1039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57260 946..1039 +
1691481373.7530823-CDS-H-paniculata_contig57260:945..10391691481373.7530823-CDS-H-paniculata_contig57260:945..1039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57260 946..1039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57260.13280.1prot_H-paniculata_contig57260.13280.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57260 74..1039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57260.13280.1

>prot_H-paniculata_contig57260.13280.1 ID=prot_H-paniculata_contig57260.13280.1|Name=mRNA_H-paniculata_contig57260.13280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=304bp
ALVENGTWESEDLGRLPAGRKAIRTKWIFKRKLKEDGSVARYKARLVAQG
VSQVDGEDFFKTSAPVARMSTLRTVFSLAAEHDFELEGMDVDAAYLDASV
GEELFVKLPLECSPFSQDIPFVRRLRKSLNDLKQSGQNWNNTLEDCRVGI
GLDHSTTDSCLYFSRDDWGETNLLVAVYIDDLVIAGRREKVDEFKHNTSQ
CFRMKDLGSLSRVLGIELRRDCPNGAITISQGSYIRGVLKRYGFDECRGV
PTPVEGKGKISAPESADKPSEPKGKSGNSIEYRGMVGSPMYVSTGARPDI
AYAV
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mRNA from alignment at H-paniculata_contig57260:74..1039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57260.13280.1 ID=mRNA_H-paniculata_contig57260.13280.1|Name=mRNA_H-paniculata_contig57260.13280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=966bp|location=Sequence derived from alignment at H-paniculata_contig57260:74..1039+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTGGTGGAGAATGGGACATGGGAAAGTGAAGACCTGGGGAGGTTACC CGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACTGA AGGAGGATGGCAGCGTGGCACGCTACAAAGCGCGGCTGGTGGCTCAAGGA GTTTCACAGGTGGACGGTGAAGATTTCTTTAAAACCAGTGCCCCCGTAGC TCGCATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATT TCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGGACGCCTCGGTG GGAGAAGAGCTGTTTGTTAAGCTACCCCTCGAGTGTTCCCCTTTCTCCCA AGACATACCGTTTGTGCGCCGACTGCGTAAAAGCCTGAACGACCTCAAGC AGAGCGGCCAAAACTGGAACAACACTCTTGAAGATTGTCGTGTTGGGATA GGACTCGACCATTCCACTACCGACTCATGCTTATACTTTTCCCGCGACGA TTGGGGAGAGACAAACCTTCTGGTGGCCGTGTATATTGACGACCTGGTCA TTGCTGGCCGTCGTGAGAAAGTAGACGAGTTCAAACATAACACAAGTCAG TGTTTTAGGATGAAAGACTTGGGATCTCTCTCGCGCGTGTTGGGAATAGA ACTACGACGTGACTGCCCTAATGGGGCCATAACCATTTCGCAGGGTAGCT ACATTCGCGGGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGGGTA CCCACCCCTGTAGAGGGAAAAGGGAAGATTTCGGCACCCGAGTCGGCCGA CAAGCCCTCCGAACCGAAGTCACTTGGAGCTGTACCATCTGACATAGGCG CAGGAGTACAAGAAAGCGGCAGAGGGAAAAGTGGCAATTCAATTGAGTAC AGAGGCATGGTAGGATCACCCATGTACGTCTCGACAGGAGCTAGACCTGA TATAGCATACGCGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig57260:74..1039+

>mRNA_H-paniculata_contig57260.13280.1 ID=mRNA_H-paniculata_contig57260.13280.1|Name=mRNA_H-paniculata_contig57260.13280.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1824bp|location=Sequence derived from alignment at H-paniculata_contig57260:74..1039+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTGGTGGAGAATGGGACATGGGAAAGTGAAGACCTGGGGAGGTTACC
CGCAGGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAAACTGA
AGGAGGATGGCAGCGTGGCACGCTACAAAGCGCGGCTGGTGGCTCAAGGA
GTTTCACAGGTGGACGGTGAAGATTTCTTTAAAACCAGTGCCCCCGTAGC
TCGCATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATT
TCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGGACGCCTCGGTG
GGAGAAGAGCTGTTTGTTAAGCTACCCCTCGAGTGTTCCCCTTTCTCCCA
AGACATACCGTTTGTGCGCCGACTGCGTAAAAGCCTGAACGACCTCAAGC
AGAGCGGCCAAAACTGGAACAACACTCTTGAAGATTGTCGTGTTGGGATA
GGACTCGACCATTCCACTACCGACTCATGCTTATACTTTTCCCGCGACGA
TTGGGGAGAGACAAACCTTCTGGTGGCCGTGTATATTGACGACCTGGTCA
TTGCTGGCCGTCGTGAGAAAGTAGACGAGTTCAAACATAACACAAGTCAG
TGTTTTAGGATGAAAGACTTGGGATCTCTCTCGCGCGTGTTGGGAATAGA
ACTACGACGTGACTGCCCTAATGGGGCCATAACCATTTCGCAGGGTAGCT
ACATTCGCGGGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGGGTA
CCCACCCCTGTAGAGGGAAAAGGGAAGATTTCGGCACCCGAGTCGGCCGA
CAAGCCCTCCGAACCGAAGCGTTGGTGGAGAATGGGACATGGGAAAGTGA
AGACCTGGGGAGGTTACCCGCAGGGCGGAAGGCGATTCGTACGAAATGGA
TTTTCAAGCGGAAACTGAAGGAGGATGGCAGCGTGGCACGCTACAAAGCG
CGGCTGGTGGCTCAAGGAGTTTCACAGGTGGACGGTGAAGATTTCTTTAA
AACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTGTTTTTAGCC
TGGCCGCCGAACATGATTTCGAATTAGAAGGCATGGACGTAGATGCGGCG
TATTTGGACGCCTCGGTGGGAGAAGAGCTGTTTGTTAAGCTACCCCTCGA
GTGTTCCCCTTTCTCCCAAGACATACCGTTTGTGCGCCGACTGCGTAAAA
GCCTGAACGACCTCAAGCAGAGCGGCCAAAACTGGAACAACACTCTTGAA
GATTGTCGTGTTGGGATAGGACTCGACCATTCCACTACCGACTCATGCTT
ATACTTTTCCCGCGACGATTGGGGAGAGACAAACCTTCTGGTGGCCGTGT
ATATTGACGACCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTC
AAACATAACACAAGTCAGTGTTTTAGGATGAAAGACTTGGGATCTCTCTC
GCGCGTGTTGGGAATAGAACTACGACGTGACTGCCCTAATGGGGCCATAA
CCATTTCGCAGGGTAGCTACATTCGCGGGGTACTAAAAAGATACGGTTTT
GACGAGTGTCGAGGGGTACCCACCCCTGTAGAGGGAAAAGGGAAGATTTC
GGCACCCGAGTCGGCCGACAAGCCCTCCGAACCGAAAGGGAAAAGTGGCA
ATTCAATTGAGTACAGAGGCATGGTAGGATCACCCATGTACGTCTCGACA
GGAGCTAGACCTGATATAGCATACGCGGTAAGGGAAAAGTGGCAATTCAA
TTGAGTACAGAGGCATGGTAGGATCACCCATGTACGTCTCGACAGGAGCT
AGACCTGATATAGCATACGCGGTA
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