mRNA_H-paniculata_contig5726.13279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5726.13279.1
Unique NamemRNA_H-paniculata_contig5726.13279.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5726.13279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5726contigH-paniculata_contig5726:10689..11276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930615.898397-CDS-H-paniculata_contig5726:10690..108551622930615.898397-CDS-H-paniculata_contig5726:10690..10855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 10691..10855 -
1691481373.7232006-CDS-H-paniculata_contig5726:10690..108551691481373.7232006-CDS-H-paniculata_contig5726:10690..10855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 10691..10855 -
1622930615.915039-CDS-H-paniculata_contig5726:11189..112761622930615.915039-CDS-H-paniculata_contig5726:11189..11276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 11190..11276 -
1691481373.7318015-CDS-H-paniculata_contig5726:11189..112761691481373.7318015-CDS-H-paniculata_contig5726:11189..11276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 11190..11276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5726.13279.1prot_H-paniculata_contig5726.13279.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5726 10691..11276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5726.13279.1

>prot_H-paniculata_contig5726.13279.1 ID=prot_H-paniculata_contig5726.13279.1|Name=mRNA_H-paniculata_contig5726.13279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
DEVWSWGWHDGGRHDSFSNHTFTPMATPELCNRRTSGFSLRGTSPPQGTR
WRDSVTHYEGLLDTTAPRSHHQYSLTTPMEENKR
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mRNA from alignment at H-paniculata_contig5726:10689..11276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5726.13279.1 ID=mRNA_H-paniculata_contig5726.13279.1|Name=mRNA_H-paniculata_contig5726.13279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=588bp|location=Sequence derived from alignment at H-paniculata_contig5726:10689..11276- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGAGGTCTGGAGCTGGGGATGGCACGACGGCGGGCGCCATGATTCCTT
TTCCAACCACACGTTTACGCCAATGGCTACACCAGAGGTGCGAAGTCACC
GTTGGGGATACAGAAGCACGGCGTCATTTGGCGCATTCTCTTGACGCATT
ATCTGATAAAATAAGAACAGAAATTGTACTGACCATCCCAAAGATGTCAG
AGCATTCAAGTAGGACTCGATCAAGATAGATGCCGCCAACTCGCTCCGCC
AGTCTTCCAATTTCCCGTGCTTGAGTCCAGTTCGCACACTAGAAACGGAG
GAACTACGAGCCATGACAAGCCGTATCTTCCTTTTTAAGGGGCAAAACCT
CATACCTCTACCAAACCGCTCGTCCCACCGCTTTTTGTTCTCCGCTAACC
TACTCGTCCCGAGACATGCAGTTGTGTAACAGAAGGACGAGTGGGTTCTC
GCTCCGCGGCACATCCCCTCCGCAAGGTACCCGCTGGCGGGACAGCGTTA
CTCACTACGAAGGGCTGCTTGACACCACGGCGCCTAGAAGTCACCATCAA
TACAGTTTAACGACCCCCATGGAGGAGAACAAACGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5726:10689..11276-

>mRNA_H-paniculata_contig5726.13279.1 ID=mRNA_H-paniculata_contig5726.13279.1|Name=mRNA_H-paniculata_contig5726.13279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig5726:10689..11276- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGAGGTCTGGAGCTGGGGATGGCACGACGGCGGGCGCCATGATTCCTT
TTCCAACCACACGTTTACGCCAATGGCTACACCAGAGGACGAGGTCTGGA
GCTGGGGATGGCACGACGGCGGGCGCCATGATTCCTTTTCCAACCACACG
TTTACGCCAATGGCTACACCAGAGTTGTGTAACAGAAGGACGAGTGGGTT
CTCGCTCCGCGGCACATCCCCTCCGCAAGGTACCCGCTGGCGGGACAGCG
TTACTCACTACGAAGGGCTGCTTGACACCACGGCGCCTAGAAGTCACCAT
CAATACAGTTTAACGACCCCCATGGAGGAGAACAAACGCTTGTGTAACAG
AAGGACGAGTGGGTTCTCGCTCCGCGGCACATCCCCTCCGCAAGGTACCC
GCTGGCGGGACAGCGTTACTCACTACGAAGGGCTGCTTGACACCACGGCG
CCTAGAAGTCACCATCAATACAGTTTAACGACCCCCATGGAGGAGAACAA
ACGC
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