mRNA_H-paniculata_contig5726.13278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5726.13278.1
Unique NamemRNA_H-paniculata_contig5726.13278.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5726.13278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5726contigH-paniculata_contig5726:9083..9528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size232
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930615.828633-CDS-H-paniculata_contig5726:9082..91121622930615.828633-CDS-H-paniculata_contig5726:9082..9112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 9083..9112 -
1691481373.7032557-CDS-H-paniculata_contig5726:9082..91121691481373.7032557-CDS-H-paniculata_contig5726:9082..9112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 9083..9112 -
1622930615.8476505-CDS-H-paniculata_contig5726:9327..95281622930615.8476505-CDS-H-paniculata_contig5726:9327..9528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 9328..9528 -
1691481373.7136285-CDS-H-paniculata_contig5726:9327..95281691481373.7136285-CDS-H-paniculata_contig5726:9327..9528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 9328..9528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5726.13278.1prot_H-paniculata_contig5726.13278.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5726 9083..9528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5726.13278.1

>prot_H-paniculata_contig5726.13278.1 ID=prot_H-paniculata_contig5726.13278.1|Name=mRNA_H-paniculata_contig5726.13278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MNHRLPERGGRSSTARYARNGIIPAESTKVHTSDASAKRGFSPPKPALLW
SASTLDVEDLVESVNTLARPLTAGNYT
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mRNA from alignment at H-paniculata_contig5726:9083..9528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5726.13278.1 ID=mRNA_H-paniculata_contig5726.13278.1|Name=mRNA_H-paniculata_contig5726.13278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=446bp|location=Sequence derived from alignment at H-paniculata_contig5726:9083..9528- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCATCGGCTACCGGAGAGGGGCGGACGATCTTCAACCGCTCGGTA
TGCAAGAAACGGCATAATTCCTGCAGAGAGTACCAAGGTTCACACTTCAG
ATGCTTCAGCAAAGCGTGGTTTCTCCCCCCCGAAGCCAGCATTATTGTGG
TCCGCGTCAACCCTCGATGTAGAAGATCTCGTTGAATCTGTTAACACATT
GGTATGTTACCTCGCAATATAACCATAGCTCTTTTTGTTTGTTCGCCCAG
GGCAAAGTCAGTTTGAGTGATCTAATAGCAACACAAAGCATTGTTCAAGT
CAGTCAATCCGAAGGTGAAGATGCGACGCACTCCGTTGTCACAGGTACGA
TAATATACACTAACGGCGGTTTTGACGGCGGGTGTGTAACGTGCGCGTCG
ATGGTTCCCTTCACAGGCCAGACCCTTGACCGCAGGTAACTATACA
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Coding sequence (CDS) from alignment at H-paniculata_contig5726:9083..9528-

>mRNA_H-paniculata_contig5726.13278.1 ID=mRNA_H-paniculata_contig5726.13278.1|Name=mRNA_H-paniculata_contig5726.13278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig5726:9083..9528- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCATCGGCTACCGGAGAGGGGCGGACGATCTTCAACCGCTCGGTA
TGCAAGAAACGGCATAATTCCTGCAGAGAGTACCAAGGTTCACACTTCAG
ATGCTTCAGCAAAGCGTGGTTTCTCCCCCCCGAAGCCAGCATTATTGTGG
TCCGCGTCAACCCTCGATGTAGAAGATCTCGTTGAATCTGTTAACACATT
GATGAACCATCGGCTACCGGAGAGGGGCGGACGATCTTCAACCGCTCGGT
ATGCAAGAAACGGCATAATTCCTGCAGAGAGTACCAAGGTTCACACTTCA
GATGCTTCAGCAAAGCGTGGTTTCTCCCCCCCGAAGCCAGCATTATTGTG
GTCCGCGTCAACCCTCGATGTAGAAGATCTCGTTGAATCTGTTAACACAT
TGGCCAGACCCTTGACCGCAGGTAACTATACAGCCAGACCCTTGACCGCA
GGTAACTATACA
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