mRNA_H-paniculata_contig5726.13276.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5726.13276.1
Unique NamemRNA_H-paniculata_contig5726.13276.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5726.13276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5726contigH-paniculata_contig5726:869..2456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size466
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5726.13276.1prot_H-paniculata_contig5726.13276.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5726 870..2456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930615.6417446-CDS-H-paniculata_contig5726:869..10141622930615.6417446-CDS-H-paniculata_contig5726:869..1014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 870..1014 -
1691481373.6480772-CDS-H-paniculata_contig5726:869..10141691481373.6480772-CDS-H-paniculata_contig5726:869..1014Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 870..1014 -
1622930615.675056-CDS-H-paniculata_contig5726:1562..17321622930615.675056-CDS-H-paniculata_contig5726:1562..1732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 1563..1732 -
1691481373.6595356-CDS-H-paniculata_contig5726:1562..17321691481373.6595356-CDS-H-paniculata_contig5726:1562..1732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 1563..1732 -
1622930615.689797-CDS-H-paniculata_contig5726:2306..24561622930615.689797-CDS-H-paniculata_contig5726:2306..2456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 2307..2456 -
1691481373.6699703-CDS-H-paniculata_contig5726:2306..24561691481373.6699703-CDS-H-paniculata_contig5726:2306..2456Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5726 2307..2456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5726.13276.1

>prot_H-paniculata_contig5726.13276.1 ID=prot_H-paniculata_contig5726.13276.1|Name=mRNA_H-paniculata_contig5726.13276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp
KEQFHRRVEAEKERVTHAIGSSQRDDSGEEHNLERFGDAGAEKLESKQEE
VNRLLLVARKRRESAIARVRRQREFARSASALGDDLQGSTASGEASAIFT
DGPDNPRSDGTPRPTATSATDKSVSASEAVVTAAAPGGVGDSGHGHQGGS
IGARR
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mRNA from alignment at H-paniculata_contig5726:869..2456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5726.13276.1 ID=mRNA_H-paniculata_contig5726.13276.1|Name=mRNA_H-paniculata_contig5726.13276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1588bp|location=Sequence derived from alignment at H-paniculata_contig5726:869..2456- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAACAGTTCCATCGTCGTGTTGAGGCCGAAAAGGAGAGAGTGACGCA
TGCGATCGGGAGCAGCCAGAGAGATGATTCTGGTGAAGAGCATAATCTCG
AAAGATTCGGAGACGCAGGAGCCGAAAAGTTGGAGTCGAAACAGGAAGAG
GTAGGGTTACGTTTAACCAGCACGTTTTACACCAGTATTTTATTTTCCTT
CGTTGTGTAGCGATGATTATCTACTCTTCTTCTATGGTGTTGCATCCAAG
AGCACAAAAGGTGAAACACCATTTGGAAAGTCGTTGAGCGCGCGGCGGTT
GTTCCTCTCCAGTTTTTCCGTTGCGATGAGGTTATGGGTTGGCGAGACCT
GCTGTAAAATACAGGAAAGTTGTAGAAGTTCGAACCTTAGCATAAATGGC
TGCAAAAACTACCACGAAACCTTTCACTCTCCGGGAAAACGGTGTATAAT
CTATGAAACGTTCTTACCGAAGAGATTATCGTATTTTGTGGCGATGTCTG
CGCCGTGCTCTCTCGATTCGACGATGCCCTTGTTTAGCCTCTGGCACCAA
AGCTACTAAACGAGACCGAGAGAAACAAACACAATTACACTATTATTACA
GCCCCTGTCGTTGGCTCCGCCGAACGTTTACAAGTCATTCAACGTTCCAA
ATCAAAGTTCCGAACTCTAGCAAATGTAACGTTCTCGGCAGCTTTCATCA
GGTGTTCTGATTTCCAAACTGCAGGTCAACCGGCTCCTTCTTGTGGCCCG
AAAAAGAAGGGAGTCGGCAATCGCAAGAGTCCGCCGTCAGCGAGAATTTG
CAAGGAGCGCATCCGCTCTTGGCGACGACCTTCAGGGTAGCACGGCCAGC
GGCGAGGCGAGTGCGATTTTCACCGATGGCCCCGATAATCCAAGGTAAGG
AACGAGAGCGAATATCTATATTGTGAAAATCAAGATATCGGGGAATATAC
TGCGCGTGAATGGGGCAAGAACGAGCTTCAGCGCCTACCGGAACTCCTTT
TGAATAGAATTGTTACGGTACCTAAGCTGACAGAAGCAATGTGTGGATGC
AGATGACGCCATATTCGTTGGAAAGTTGGCGAAAGCGGTTGAACATCAGT
TTGACATAAGACCAACACGTTGATGTCTGCCCCGACACAAGATTCTCAAC
TCCCTAAAATACAATTGCTCTGTGAGATGCTGTTGATCTCGCTCGAACTG
CAGCGACCGGAAAACCTGCCACACCTCTCGACTGGCGCTGACACTGCGCG
CACCGTACTACCCGCAAAAACGGGATACCAACCACGCCTGCGCATCACGA
TCTATACATATGAATACAGTATCCGTGATAAAAGCTATGTGATTTACACA
CGTGTGTGTATATATATATATATATATATTCTGCCCCCAAAATATGCACC
TACAGCTGTTTTCTATTTGAGAATTATATTGTTCACATTCAGGAGCGACG
GGACCCCGAGACCTACGGCTACTTCTGCAACAGACAAATCGGTTAGTGCC
TCAGAGGCTGTTGTCACTGCTGCCGCCCCTGGTGGCGTTGGTGATTCTGG
CCACGGACACCAAGGAGGAAGCATAGGAGCAAGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5726:869..2456-

>mRNA_H-paniculata_contig5726.13276.1 ID=mRNA_H-paniculata_contig5726.13276.1|Name=mRNA_H-paniculata_contig5726.13276.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig5726:869..2456- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAACAGTTCCATCGTCGTGTTGAGGCCGAAAAGGAGAGAGTGACGCA
TGCGATCGGGAGCAGCCAGAGAGATGATTCTGGTGAAGAGCATAATCTCG
AAAGATTCGGAGACGCAGGAGCCGAAAAGTTGGAGTCGAAACAGGAAGAG
AAGGAACAGTTCCATCGTCGTGTTGAGGCCGAAAAGGAGAGAGTGACGCA
TGCGATCGGGAGCAGCCAGAGAGATGATTCTGGTGAAGAGCATAATCTCG
AAAGATTCGGAGACGCAGGAGCCGAAAAGTTGGAGTCGAAACAGGAAGAG
GTCAACCGGCTCCTTCTTGTGGCCCGAAAAAGAAGGGAGTCGGCAATCGC
AAGAGTCCGCCGTCAGCGAGAATTTGCAAGGAGCGCATCCGCTCTTGGCG
ACGACCTTCAGGGTAGCACGGCCAGCGGCGAGGCGAGTGCGATTTTCACC
GATGGCCCCGATAATCCAAGGTCAACCGGCTCCTTCTTGTGGCCCGAAAA
AGAAGGGAGTCGGCAATCGCAAGAGTCCGCCGTCAGCGAGAATTTGCAAG
GAGCGCATCCGCTCTTGGCGACGACCTTCAGGGTAGCACGGCCAGCGGCG
AGGCGAGTGCGATTTTCACCGATGGCCCCGATAATCCAAGGAGCGACGGG
ACCCCGAGACCTACGGCTACTTCTGCAACAGACAAATCGGTTAGTGCCTC
AGAGGCTGTTGTCACTGCTGCCGCCCCTGGTGGCGTTGGTGATTCTGGCC
ACGGACACCAAGGAGGAAGCATAGGAGCAAGACGGGAGCGACGGGACCCC
GAGACCTACGGCTACTTCTGCAACAGACAAATCGGTTAGTGCCTCAGAGG
CTGTTGTCACTGCTGCCGCCCCTGGTGGCGTTGGTGATTCTGGCCACGGA
CACCAAGGAGGAAGCATAGGAGCAAGACGG
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