mRNA_H-paniculata_contig5725.13275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5725.13275.1
Unique NamemRNA_H-paniculata_contig5725.13275.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5725.13275.1 vs. uniprot
Match: A0A6H5J7E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7E6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.210e-25
Identity = 105/272 (38.60%), Postives = 142/272 (52.21%), Query Frame = 2 
Query:  326 RIPRSSNATPTASTSSLLVGDEDPTGCTEDMHVLVPINDVVCTPLSALSEAAADTLSGAGGGNIDNMHVRIEMDRFCRTLESVFRTDYSGRVDRANAAPLLGGRWDRAGAAAATAAAAGS----VSTPDSAQHKTNGLVLS--------AAGNQVARIDGKAKQSIVDETVVQRTGRWRRVPWKRGDQKARNERRNTSEGGVAPETEQKQG--RWSRNATGRRRSRDREDPAR----AAEERCLPLLHLVEDLVRDAMFSPISERDVMMSQA 1087
            R P    AT   S   +LVG  +P     D++VLVP+ DVV  PL+ +S+AAAD+L   GGG+      R+ M+RFC+TLESVFRT++S +VDRANA  +LGG  DR  A   +  A G        P + Q    G            + G  +A   G  K++   ++   + GRWR    +R  +   +   +  E   AP  E   G  R  R+  G+RRS   +D  R    A E   +PLL LV++LVR+AMFSPI  RDVMMSQA
Sbjct:   62 RPPSRLAATAAKSGREVLVGITEPGHEDTDVNVLVPVKDVVPVPLADISQAAADSL---GGGDA----TRVSMERFCKTLESVFRTEFSVKVDRANADFVLGGGRDRTTAGRGSRGAGGGELLQAPQPQAGQTTKEGGAKGEGSAGDDESPGTAMATTKGVLKKA--GDSWKSKRGRWR-DSLRRKKKIEADASEDLGEAPPAPAAEVVAGKRRGKRSGGGKRRSGRGDDSRRIVDRAGETAAVPLLELVDELVRNAMFSPIGARDVMMSQA 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5725.13275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7E6_9PHAE1.210e-2538.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5725contigH-paniculata_contig5725:7608..11063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1269
Cds size1095
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5725.13275.1prot_H-paniculata_contig5725.13275.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5725 7624..9371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930615.5132143-UTR-H-paniculata_contig5725:7607..76231622930615.5132143-UTR-H-paniculata_contig5725:7607..7623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5725 7608..7623 +
1691481373.6027982-UTR-H-paniculata_contig5725:7607..76231691481373.6027982-UTR-H-paniculata_contig5725:7607..7623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5725 7608..7623 +
1622930615.5717835-UTR-H-paniculata_contig5725:9371..94961622930615.5717835-UTR-H-paniculata_contig5725:9371..9496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5725 9372..9496 +
1691481373.6285455-UTR-H-paniculata_contig5725:9371..94961691481373.6285455-UTR-H-paniculata_contig5725:9371..9496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5725 9372..9496 +
1622930615.5994532-UTR-H-paniculata_contig5725:11030..110631622930615.5994532-UTR-H-paniculata_contig5725:11030..11063Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5725 11031..11063 +
1691481373.6376452-UTR-H-paniculata_contig5725:11030..110631691481373.6376452-UTR-H-paniculata_contig5725:11030..11063Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5725 11031..11063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930615.5330734-CDS-H-paniculata_contig5725:7623..77301622930615.5330734-CDS-H-paniculata_contig5725:7623..7730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5725 7624..7730 +
1691481373.6112635-CDS-H-paniculata_contig5725:7623..77301691481373.6112635-CDS-H-paniculata_contig5725:7623..7730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5725 7624..7730 +
1622930615.548332-CDS-H-paniculata_contig5725:8383..93711622930615.548332-CDS-H-paniculata_contig5725:8383..9371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5725 8384..9371 +
1691481373.6197226-CDS-H-paniculata_contig5725:8383..93711691481373.6197226-CDS-H-paniculata_contig5725:8383..9371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5725 8384..9371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5725.13275.1

>prot_H-paniculata_contig5725.13275.1 ID=prot_H-paniculata_contig5725.13275.1|Name=mRNA_H-paniculata_contig5725.13275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=365bp
MGINNALWLGILLCAKSRIAPAFRMPAQIAPTLRSRRRGLTTLAAEPNDP
SNGTEGRLRPKRIARARSASPREKDATGMVDGSDINRSGTGSSSKSSRSG
GKKRIPRSSNATPTASTSSLLVGDEDPTGCTEDMHVLVPINDVVCTPLSA
LSEAAADTLSGAGGGNIDNMHVRIEMDRFCRTLESVFRTDYSGRVDRANA
APLLGGRWDRAGAAAATAAAAGSVSTPDSAQHKTNGLVLSAAGNQVARID
GKAKQSIVDETVVQRTGRWRRVPWKRGDQKARNERRNTSEGGVAPETEQK
QGRWSRNATGRRRSRDREDPARAAEERCLPLLHLVEDLVRDAMFSPISER
DVMMSQARRNGVFF*
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mRNA from alignment at H-paniculata_contig5725:7608..11063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5725.13275.1 ID=mRNA_H-paniculata_contig5725.13275.1|Name=mRNA_H-paniculata_contig5725.13275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3456bp|location=Sequence derived from alignment at H-paniculata_contig5725:7608..11063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAACAGTCAGTACAAATGGGGATCAACAATGCACTATGGCTTGGAATCC
TGCTCTGCGCCAAATCGAGAATTGCTCCCGCTTTTCGTATGCCGGCACAA
ATTGCTCCTACTTTGCGTAGTAGGTGAGTTTAATCGCCTCGCCTTTTCAC
CTACACCCTATACGACAGACGTCCGTCTCTGTGCCCACCCCCTTGTGTAC
CGCCTTGTCATCACCGAAAATCCGAACTGGCGGTGGTGCATAGGAAAGTT
GACATTATATTGTGAAGTTGACATTTACAGTTATAGTCTAACCGTTCTGT
TTTCATCACTTTTTCTATCGGGAGTTAGACAGCGGGCTACAAACGAAGGT
ATAAGGCCGACCGGCTACAAGGCATCGGCACAGACAGTATTAGTAGTCCT
CGCCGACCCGTTGCGGAACTAAATATCGTCAGGTCACCTACAGTACAGTG
CTATTGATTATAAGGCGGTGAACTGTTTCAACAGTTGATGTATGTTGAAC
GGCAGCTTTCGGATCCTCTTACACAACACGACGCAAACGTTAGCCTGACA
TACGTACACAACCAGCGCGACTTATTCGCGACGGGAGTTGACGGGACCGA
GCTTCGTTACTCGACTTTTCCATACAGTAGCTATGTCAAGATAGCTTGCA
TAGTACAGTGCAAAATAGCGCAATCCGCCCGAATAATTATTTCCCCGCTC
CAAGTCTATGGCCCTCTGATCCCGTCCACGACTCGCAACATCAAAACAAA
AACGTTCCCTGCTATCGTGCCGGCAGGCGACGAGGCTTAACTACTCTCGC
CGCAGAACCTAACGACCCCTCTAATGGGACCGAAGGGCGACTCCGCCCGA
AGCGCATAGCACGGGCACGGTCAGCCTCACCGCGAGAAAAGGATGCAACG
GGAATGGTCGACGGGAGCGATATCAACCGCAGCGGCACGGGTAGCAGCAG
CAAGAGCAGTCGGTCCGGAGGGAAAAAAAGGATACCACGTTCATCGAATG
CGACGCCAACGGCATCAACGTCGTCGTTACTCGTAGGAGATGAGGATCCC
ACCGGATGCACAGAGGATATGCACGTCCTGGTGCCGATTAACGACGTGGT
TTGTACCCCCCTTAGCGCTCTGTCCGAGGCAGCTGCCGATACGCTTAGTG
GGGCCGGCGGTGGTAACATCGATAACATGCACGTGCGAATAGAAATGGAC
CGCTTTTGCCGGACCCTGGAATCAGTCTTTAGGACCGATTACTCTGGAAG
GGTTGATCGAGCGAACGCGGCGCCGTTGCTGGGCGGTCGGTGGGACCGTG
CTGGCGCGGCGGCTGCGACGGCGGCGGCAGCCGGCAGCGTTTCTACACCG
GATTCCGCTCAGCATAAAACCAACGGCCTTGTTCTGTCAGCGGCGGGGAA
CCAGGTGGCGAGGATCGACGGCAAGGCAAAGCAGTCTATCGTCGACGAAA
CCGTTGTTCAACGCACCGGCAGATGGCGCAGAGTGCCATGGAAGCGAGGC
GACCAGAAAGCGAGGAATGAGAGACGGAATACATCGGAAGGCGGTGTGGC
TCCCGAAACCGAGCAGAAGCAGGGAAGGTGGTCACGGAACGCCACCGGTC
GCCGGCGCTCGCGAGATAGAGAGGACCCGGCCCGGGCCGCGGAGGAGAGA
TGTTTGCCGTTGTTGCATTTGGTGGAGGACCTGGTACGCGACGCCATGTT
CAGTCCAATCAGCGAACGCGACGTCATGATGTCACAGGCACGGAGAAATG
GAGTATTTTTTTAGAGATTTTGAGTGCGCAACGTGTTGTGTATATTTTTT
GGTTCTTGTGCGTGTGTGTATGGCGAAGGAAAATGATTTGCTGCAGAGCA
CCTTCTCTTCTCTCTTCACGGGGTGGCTGAAGAATGCGGGTGGGTCCATG
CTCGCAGAGCACCGTAAAATGAATTTTTTGAAGAAATCAGCATAACACCA
CTCGTTGATGTCTGTTAAACGGAATGATCAGAATTGCCAGTTAACCTTCA
ATTGTCTATCCAGATCCTGCAAAAAAAAAATGGTAGAAAACTATTTGTTA
AGAGTCCTCACCTGTTTGTTGTTTTACCTGTGTGTAACGTACCGCGTTCG
AGTCTTGTGTTGTATCTTGTCGTTTTGACAATGGTTTCGACGCAAATAGT
CAGCCATTGTTACCTAGAGCTATTAGTCACTTTCCGACGACCGCGTTTTC
GCTGTGTTACGGTGTCCGTGGTTGTCGAGGTACAGTATGACGTTTTCTAC
ATTTGACCAGAAAGATTTTATCGCGGTACGCTCCTTACAAGGGCTGCCGC
ACAGATATTTTCTTTTGGGACAGTTGTGCTCCCAACACTTCCGTATTATT
TTGTTTCCCCTTTCATGCGTCTATCCAAAATCTTCTAGTTTTTCTCCACA
TGCCGCCTCTTGTGGCCAGAACGAGCAGAGTACAACAGCCCTCACCTTGG
GGCGCACTGCTCTTTCGGGTAGGCACTTGCCTGTGAAATACAGAGTACAT
GCACAGCCCGCCGAGAGCACGACCTGTTCCAGGCAGGTTACAACAGCAGT
GATTTTGAAGGGACCTGAAGACGGCTCAATTTGTTGAGCTGTGGGGTCGA
CTTTTAAGGCTGATCATATCCCTATAGAAACCCTTGTTGACGCTAGTCAT
TACCGGGAGCTGTGCACAGCGCAATCCGCCACCCGCCACCCGCCACCCGC
CACCCGCCGTCTGATGTTCCTGTCCGCACTTTAGTTTTGATGATATCCTA
TATCCGCGTAACTGCCCTTGTGTCGAAGCAGCAACAAGAAGTTTTAGTTT
TTTTCAACAGCCACGTCGTCTCTTCAACAAACAACATTTAACATTTAACA
TTTGAACAGCGAATAAATTTGTGAACAGCGACAACTAACTTTTTAACACA
AACAATGTGGAGAACACGTCGGAGTAAAGGGTAATTCGTACATGTTCTTG
TAGACGGCAAACAAATAAATAAATAACGTCGTCGCCGTTGGGGACCCTGA
TCACGGGATCACAAGGTCGTGAGTTCGAATCCCATCTCGATCACCGCAAA
ATAAATTTTCGAGTTAAGCGGAGCCGCAAAGATGGTGAGGGAACGAACCT
CGTCTGAGGCAGTGTAGAGGTGAGGACCCACACGAAAATGACTTCCCACC
TGTCAATAAAGTGGCAAGTTACTCGTGAAACAAAAAGAACGTTCTTCACC
GCCAGCCGGTCGAAACCAGTTCCCACTTAAGGCCTCCTACAAAAAAAGCA
AAGAGACTCATAAAGAAGAGGCGGGGGTGTGGAGAATGACTACCCCATAG
ATAGGGATACTCGTAATTCCCACTAGTATCTATTGAGGGCAAATCCTCTT
TTCACAGGAACTCTTTTTTCCTAGACGTAATCCTTTTTTTTTTTGTTTTT
TTCTCTACATTTTGGTTCAATAGGCGTTATCTGCGGAATTTCCAACATCC
GCCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5725:7608..11063+

>mRNA_H-paniculata_contig5725.13275.1 ID=mRNA_H-paniculata_contig5725.13275.1|Name=mRNA_H-paniculata_contig5725.13275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2190bp|location=Sequence derived from alignment at H-paniculata_contig5725:7608..11063+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGATCAACAATGCACTATGGCTTGGAATCCTGCTCTGCGCCAAATC
GAGAATTGCTCCCGCTTTTCGTATGCCGGCACAAATTGCTCCTACTTTGC
GTAGTAGATGGGGATCAACAATGCACTATGGCTTGGAATCCTGCTCTGCG
CCAAATCGAGAATTGCTCCCGCTTTTCGTATGCCGGCACAAATTGCTCCT
ACTTTGCGTAGTAGGCGACGAGGCTTAACTACTCTCGCCGCAGAACCTAA
CGACCCCTCTAATGGGACCGAAGGGCGACTCCGCCCGAAGCGCATAGCAC
GGGCACGGTCAGCCTCACCGCGAGAAAAGGATGCAACGGGAATGGTCGAC
GGGAGCGATATCAACCGCAGCGGCACGGGTAGCAGCAGCAAGAGCAGTCG
GTCCGGAGGGAAAAAAAGGATACCACGTTCATCGAATGCGACGCCAACGG
CATCAACGTCGTCGTTACTCGTAGGAGATGAGGATCCCACCGGATGCACA
GAGGATATGCACGTCCTGGTGCCGATTAACGACGTGGTTTGTACCCCCCT
TAGCGCTCTGTCCGAGGCAGCTGCCGATACGCTTAGTGGGGCCGGCGGTG
GTAACATCGATAACATGCACGTGCGAATAGAAATGGACCGCTTTTGCCGG
ACCCTGGAATCAGTCTTTAGGACCGATTACTCTGGAAGGGTTGATCGAGC
GAACGCGGCGCCGTTGCTGGGCGGTCGGTGGGACCGTGCTGGCGCGGCGG
CTGCGACGGCGGCGGCAGCCGGCAGCGTTTCTACACCGGATTCCGCTCAG
CATAAAACCAACGGCCTTGTTCTGTCAGCGGCGGGGAACCAGGTGGCGAG
GATCGACGGCAAGGCAAAGCAGTCTATCGTCGACGAAACCGTTGTTCAAC
GCACCGGCAGATGGCGCAGAGTGCCATGGAAGCGAGGCGACCAGAAAGCG
AGGAATGAGAGACGGAATACATCGGAAGGCGGTGTGGCTCCCGAAACCGA
GCAGAAGCAGGGAAGGTGGTCACGGAACGCCACCGGTCGCCGGCGCTCGC
GAGATAGAGAGGACCCGGCCCGGGCCGCGGAGGAGAGATGTTTGCCGTTG
TTGCATTTGGTGGAGGACCTGGTACGCGACGCCATGTTCAGTCCAATCAG
CGAACGCGACGTCATGATGTCACAGGCACGGAGAAATGGAGTATTTTTTT
AGGCGACGAGGCTTAACTACTCTCGCCGCAGAACCTAACGACCCCTCTAA
TGGGACCGAAGGGCGACTCCGCCCGAAGCGCATAGCACGGGCACGGTCAG
CCTCACCGCGAGAAAAGGATGCAACGGGAATGGTCGACGGGAGCGATATC
AACCGCAGCGGCACGGGTAGCAGCAGCAAGAGCAGTCGGTCCGGAGGGAA
AAAAAGGATACCACGTTCATCGAATGCGACGCCAACGGCATCAACGTCGT
CGTTACTCGTAGGAGATGAGGATCCCACCGGATGCACAGAGGATATGCAC
GTCCTGGTGCCGATTAACGACGTGGTTTGTACCCCCCTTAGCGCTCTGTC
CGAGGCAGCTGCCGATACGCTTAGTGGGGCCGGCGGTGGTAACATCGATA
ACATGCACGTGCGAATAGAAATGGACCGCTTTTGCCGGACCCTGGAATCA
GTCTTTAGGACCGATTACTCTGGAAGGGTTGATCGAGCGAACGCGGCGCC
GTTGCTGGGCGGTCGGTGGGACCGTGCTGGCGCGGCGGCTGCGACGGCGG
CGGCAGCCGGCAGCGTTTCTACACCGGATTCCGCTCAGCATAAAACCAAC
GGCCTTGTTCTGTCAGCGGCGGGGAACCAGGTGGCGAGGATCGACGGCAA
GGCAAAGCAGTCTATCGTCGACGAAACCGTTGTTCAACGCACCGGCAGAT
GGCGCAGAGTGCCATGGAAGCGAGGCGACCAGAAAGCGAGGAATGAGAGA
CGGAATACATCGGAAGGCGGTGTGGCTCCCGAAACCGAGCAGAAGCAGGG
AAGGTGGTCACGGAACGCCACCGGTCGCCGGCGCTCGCGAGATAGAGAGG
ACCCGGCCCGGGCCGCGGAGGAGAGATGTTTGCCGTTGTTGCATTTGGTG
GAGGACCTGGTACGCGACGCCATGTTCAGTCCAATCAGCGAACGCGACGT
CATGATGTCACAGGCACGGAGAAATGGAGTATTTTTTTAG
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