mRNA_H-paniculata_contig5723.13273.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5723.13273.1
Unique NamemRNA_H-paniculata_contig5723.13273.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5723.13273.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.400e-13
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:    7 LASKILDWAHNWLRGEGGYFLKHSSEQAKRTPPDLRFAEVADFSLEFLRRLEELRLHPENIWTIYSSSREKKMKASE 237
            L   +L WA+NW+RGEGGY L+     A+R P  +R A++ADFSL  + RLEELR+HP+  +    +  EK +   E
Sbjct:  380 LRKVVLSWAYNWIRGEGGYLLEGRGGVAERLPAGMRLADIADFSLLLVERLEELRMHPKKYFPDLLAWAEKTLSEEE 456
[Close]
BLAST of mRNA_H-paniculata_contig5723.13273.1 vs. uniprot
Match: A0A6H5KE81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE81_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.560e-8
Identity = 26/64 (40.62%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    7 LASKILDWAHNWLRGEGGYFLKHSSEQAKRTPPDLRFAEVADFSLEFLRRLEELRLHPENIWTI 198
            L   + DWA+NW+RG+GG+FLK      +R  P +R  EVADFS   L+++E +R  P+  + +
Sbjct:  105 LGELVFDWAYNWIRGKGGFFLKCEGV-GRRLFPGMRLVEVADFSRLLLQKVETIRKEPKTYFRV 167
[Close]
BLAST of mRNA_H-paniculata_contig5723.13273.1 vs. uniprot
Match: A0A6H5JQF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.790e-8
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    7 LASKILDWAHNWLRGEGGYFLKHSSEQAKRTPPDLRFAEVADFSLEFLRRLEELRLHPE 183
            L   + DWA+NW+RG+GG+FLK      +R  P +R  EVADFS   L +LE +R  PE
Sbjct:   60 LGELLFDWAYNWIRGKGGFFLKCEGV-GRRLFPGMRLVEVADFSRLLLLKLETIRKDPE 117
[Close]
BLAST of mRNA_H-paniculata_contig5723.13273.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 7.460e-7
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    7 LASKILDWAHNWLRGEGGYFLKHSSEQAKRTPPDLRFAEVADFSLEFLRRLEELRLHP 180
            L   + DWA+NW+RG+GG+FLK      ++  P +R  EVADFS   L +LE +R  P
Sbjct:  133 LGELLFDWAYNWIRGKGGFFLKGEGV-GRQLFPGMRLVEVADFSRLLLVKLETIRKDP 189
[Close]
BLAST of mRNA_H-paniculata_contig5723.13273.1 vs. uniprot
Match: A0A6H5KP72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP72_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.030e-6
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    7 LASKILDWAHNWLRGEGGYFLKHSSEQAKRTPPDLRFAEVADFSLEFLRRLEELRLHP 180
            L   + DWA+NW+RG+GG+FLK      +R  P +R  EVAD S   L +LE +R  P
Sbjct:   93 LGELLFDWANNWIRGKGGFFLKGEGV-GRRLFPGMRLVEVADCSRLLLLKLETIRKDP 149
[Close]
BLAST of mRNA_H-paniculata_contig5723.13273.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.150e-6
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    7 LASKILDWAHNWLRGEGGYFLKHSSEQAKRTPPDLRFAEVADFSLEFLRRLEELRLHP 180
            L   + DWA+NW+RG+GG+FLK      +R  P +R  EVAD S   L +LE +R  P
Sbjct:   93 LGELLFDWANNWIRGKGGFFLKGEGV-GRRLFPGMRLVEVADCSRLLLLKLETIRKDP 149
[Close]
BLAST of mRNA_H-paniculata_contig5723.13273.1 vs. uniprot
Match: A0A6H5KEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEV4_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    7 LASKILDWAHNWLRGEGGYFLKHSSEQAKRTPPDLRFAEVADFS 138
            L   + DWA+NW+RG+GG+FLK      +R  P +R  EVADFS
Sbjct:  153 LGELVFDWAYNWIRGKGGFFLKGEGV-GRRLFPGMRLVEVADFS 195
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5723.13273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JU73_9PHAE2.400e-1344.16Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE81_9PHAE2.560e-840.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQF6_9PHAE5.790e-847.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIQ1_ECTSI7.460e-744.83Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5KP72_9PHAE1.030e-644.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8G1_9PHAE2.150e-644.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEV4_9PHAE1.270e-550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5723contigH-paniculata_contig5723:10360..10992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930615.275218-CDS-H-paniculata_contig5723:10360..103811622930615.275218-CDS-H-paniculata_contig5723:10360..10381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5723 10361..10381 -
1691481373.5044045-CDS-H-paniculata_contig5723:10360..103811691481373.5044045-CDS-H-paniculata_contig5723:10360..10381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5723 10361..10381 -
1622930615.2924628-CDS-H-paniculata_contig5723:10755..109921622930615.2924628-CDS-H-paniculata_contig5723:10755..10992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5723 10756..10992 -
1691481373.5153904-CDS-H-paniculata_contig5723:10755..109921691481373.5153904-CDS-H-paniculata_contig5723:10755..10992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5723 10756..10992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5723.13273.1prot_H-paniculata_contig5723.13273.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5723 10361..10992 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5723.13273.1

>prot_H-paniculata_contig5723.13273.1 ID=prot_H-paniculata_contig5723.13273.1|Name=mRNA_H-paniculata_contig5723.13273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
NELASKILDWAHNWLRGEGGYFLKHSSEQAKRTPPDLRFAEVADFSLEFL
RRLEELRLHPENIWTIYSSSREKKMKASEYDFFYGE
back to top

mRNA from alignment at H-paniculata_contig5723:10360..10992-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5723.13273.1 ID=mRNA_H-paniculata_contig5723.13273.1|Name=mRNA_H-paniculata_contig5723.13273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at H-paniculata_contig5723:10360..10992- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGAGCTGGCGTCGAAGATCTTGGACTGGGCGCACAACTGGTTGCGCGG
TGAGGGTGGGTATTTCCTAAAGCATTCCAGCGAGCAGGCGAAACGCACGC
CACCTGATTTGCGCTTCGCGGAAGTGGCTGATTTCTCCCTCGAGTTCCTG
CGACGGCTGGAGGAGCTTCGCCTTCACCCCGAAAATATTTGGACAATTTA
CTCGAGTTCGCGCGAAAAAAAAATGAAGGCATCAGAGGTAATGCTCGTTT
TGTTGGATGATGCGTGCGGTGACCTTAGATGGTGGTGTGGCTCTTGCGCG
GCAGTAAGGTTTCGTTATCTCCTGCTGTTCGTGCCTCTACGGTCGTGTGT
ACCCATGTTACACGTTGCGCTGGTTTCAGTCGGGTGTTCTCTGTTGAACT
GATTGTCACGATTCTTGTTGCGGGAGAAATTTGGTATTTGTCGTGCCGCT
ACAAGTCAACCATAGTGTTATTTTTTCGTTACATCTCGATCACTGCTGTC
GGGGATCCCCTCTGGGATTGGTGGTGGTGGTGCTGCTGCTGCCGTTTCGT
TACCCCTCTCTTGCTTTTCCTGTGCTTGCACTCTCAATGCTTTACGTGCT
TTTGCTGGCAGTACGATTTTTTTTATGGGGAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5723:10360..10992-

>mRNA_H-paniculata_contig5723.13273.1 ID=mRNA_H-paniculata_contig5723.13273.1|Name=mRNA_H-paniculata_contig5723.13273.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig5723:10360..10992- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGAGCTGGCGTCGAAGATCTTGGACTGGGCGCACAACTGGTTGCGCGG
TGAGGGTGGGTATTTCCTAAAGCATTCCAGCGAGCAGGCGAAACGCACGC
CACCTGATTTGCGCTTCGCGGAAGTGGCTGATTTCTCCCTCGAGTTCCTG
CGACGGCTGGAGGAGCTTCGCCTTCACCCCGAAAATATTTGGACAATTTA
CTCGAGTTCGCGCGAAAAAAAAATGAAGGCATCAGAGAATGAGCTGGCGT
CGAAGATCTTGGACTGGGCGCACAACTGGTTGCGCGGTGAGGGTGGGTAT
TTCCTAAAGCATTCCAGCGAGCAGGCGAAACGCACGCCACCTGATTTGCG
CTTCGCGGAAGTGGCTGATTTCTCCCTCGAGTTCCTGCGACGGCTGGAGG
AGCTTCGCCTTCACCCCGAAAATATTTGGACAATTTACTCGAGTTCGCGC
GAAAAAAAAATGAAGGCATCAGAGTACGATTTTTTTTATGGGGAATACGA
TTTTTTTTATGGGGAA
back to top