mRNA_H-paniculata_contig572.13271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig572.13271.1
Unique NamemRNA_H-paniculata_contig572.13271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: A0A6H5L3X4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L3X4_9PHAE)

HSP 1 Score: 355 bits (911), Expect = 5.410e-109
Identity = 207/384 (53.91%), Postives = 250/384 (65.10%), Query Frame = 3 
Query:    3 CVYGTYCYNNDQCERKVPEYRGYASPSIAVLLGVCLVGGTSIFCAMAVLSVAREYANQSAEARATAA--ASYMAPSAPPE---AQSSNRDGYMMLSGADGTDGT----EDGSSAHAEAEVGSTKGKR--PAAVGGGLAAAT-----------RAPRGLSRSRRGRAGVAAA---------------AEPGPSRLARKILGFTRCVAGTGIMAILAGCTVVVMFAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTMVFNPTLLAGGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKVADAVEYDRSLCNCTQMMQGKRPP 1043
            C YGTYCYNN+QC+R++PE++GY +PSIAVLLGV LVG T++FC +A +S+AREYA +SA  R   A   +  +P        A+ S   GYM L+G D +       +D S  H       T+G     AA  GG  AA            +  R   R+   R G + +               A PGPS LARK+   TR V GT +   L  C VV+ FAPH PGVNVCNTEFDWGSIV+S+K   VEAD Q+L+SIYNPN+LNAEIE G+A+LYH   +VG M F P LLAGGYVTD+LLT++F  E WEEA LGLEYETG LAFLMDATISASV++HG+KTYPFTFS+NNYYIKVAD   YDRSLCNCTQMMQG + P
Sbjct:   65 CAYGTYCYNNNQCQRELPEFKGYEAPSIAVLLGVFLVGSTTLFCGIAGISIAREYAKESAATRRQNALRVTTFSPDRSVRLTAAEPSGDGGYMTLAGDDDSXXXXXXXDDESDVHMRGGGIGTRGPSGPSAAEEGGAEAAXXXXXXXXXPVPKGKRDFGRAGARRVGRSTSRXXXXXXXXXXXXXXALPGPSPLARKVYCVTRLVCGTSMAVALLICGVVIGFAPHAPGVNVCNTEFDWGSIVHSIKSAGVEADFQILVSIYNPNVLNAEIEMGSALLYHGDTEVGVMAFEPALLAGGYVTDILLTITFKTEVWEEAHLGLEYETGQLAFLMDATISASVMWHGYKTYPFTFSINNYYIKVADTTGYDRSLCNCTQMMQGGKQP 448
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BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: K8Z7T5_NANGC (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7T5_NANGC)

HSP 1 Score: 145 bits (367), Expect = 8.220e-34
Identity = 104/324 (32.10%), Postives = 163/324 (50.31%), Query Frame = 3 
Query:    3 CVYGTYCYNNDQCERKVPEYRGYASPSIAVLLGVCLVGGTSIFCAMAVLSVAREYANQSAEARATAAASYMAPSAPPEAQSSNRDGYMMLSGADGTDGTEDGSSAHAEAEVGSTKGKRPAAVGGGLAAATRAPRGLSRSRRGRAGVAAAAEPGPSRLARKILGFTRCVAGTGIMAILAGCTVVVMFAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTMVFNPTLLAGGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKV 974
            C+ G  CY ++ C R  PE + + +PS +VL+G+ +   TS+FC  A   VA EY   +   R     +Y    A  E +    +G    S +  + G  +G             G+R     GG       PR +    R R  V        S++ R  L  T  +A   ++A+      V ++ P +P VNVCNT  DWGS+   L+++ +EAD QLL+S+YNPN L+  I SG  V  H H  +G +   P L+ GG +TD+L+TL F    W+   L L ++TG+L  ++D  ++  V+++G + +PFT+ + NY+I V
Sbjct:  110 CLTGVNCYGSEACVRSEPEAKPHPAPSGSVLVGLGIFLLTSLFCTSACFFVANEYVKHATVVRMEKDPNYQELLAFDEEE----EGLAGRSRSGPSKGGGEG-----------VLGERRPQGSGGEDVWDPVPR-IRVEERSRFLVVC------SQVIRAALILT--LAWLVMVAV-----AVFLYTPQVPDVNVCNTALDWGSLFTGLERLKLEADYQLLLSVYNPNRLDVAISSGQGVFKHDHEAIGQVEVAPFLIKGGAITDVLVTLVFTPSVWKSLQLDLAFQTGSLMLMVDMNVAGRVIWNGRRLFPFTYGLQNYFIHV 404
[Close]
BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: A0A7S2XY72_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY72_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.000e-21
Identity = 57/174 (32.76%), Postives = 103/174 (59.20%), Query Frame = 3 
Query:  519 IMAILAGCTVVVM---FAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTMVFNPT----LLAGGYVTDMLLTLSFDGEAWEEA-DLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKVADAVEYD-RSLCNC 1013
            ++ +L   TV V+   ++PH P + +CNTE DWGSI+  L K+ VEA+ ++L+S+YNPN++  +++  + V+ H   Q+GT+         L+    V+D+L+T  F   + +++  L  EY+ G+L  ++D ++  ++L    +  PF + ++NY+I V +    D R LCNC
Sbjct:   73 VLVVLVVMTVSVLLGLYSPHYPQLGICNTELDWGSILRGLVKMKVEAEAEVLVSVYNPNLIAMDLKHLSGVMKHDGQQIGTLEAGGARGGFLIGALSVSDILVTTRFMMTSVQKSVQLEAEYQMGSLLLMVDLSLEGALLIGSHQVSPFQYGLSNYFIHVNEYSSDDNRQLCNC 246
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BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: K3WID0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WID0_GLOUD)

HSP 1 Score: 103 bits (258), Expect = 5.010e-20
Identity = 62/170 (36.47%), Postives = 93/170 (54.71%), Query Frame = 3 
Query:  522 MAILAGCTVV-VMFAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTMVFNPTLLA-GGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKVADAVEYDRSLCNCTQMM 1025
            +A L G TV+ +MF P +P  NVCN EFDW SI+ SL+ +H + + Q+LIS  N N     +E G A +YH    VG    +  L A  G +TD++  +  + +  E   L  ++    L F ++ATIS S+ +   K Y  + SV++  I+     EYDR LC CT+ +
Sbjct:  211 LASLIGITVLALMFYPRMPDYNVCNREFDWESILQSLRSLHPKIEYQVLISAINENRFGFMLEEGKADIYHNGTLVGYWKLDAPLEAKAGSITDVIAPIKIEPDYSEAYSLWSDFRNNELIFRINATISGSITWGKHKIYRISTSVDD--IEFLVGAEYDRGLCKCTEYL 378
[Close]
BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: A0A7S2MD85_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MD85_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.240e-20
Identity = 58/183 (31.69%), Postives = 96/183 (52.46%), Query Frame = 3 
Query:  474 ARKILGFTRCVAGTGIMAILAGCTVVVMFAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTM-VFNPTLLAGGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKVADAVEYDRSLCNCTQ 1019
            AR++    +      ++  LA  +  V+F P +P  NVCN EF W SI++S+K   +EA +++L+SIYNPN  + +++ G+    H    VG   + + T +    +TD+ L  +   + WE   L  EY  GTL  ++DA + A +       Y F  ++++Y ++V D    DR LC C Q
Sbjct:  288 ARRLFNLCKACYIATVVITLAIVSSSVIFYPKLPEYNVCNQEFQWKSIIDSMKSTELEASIEVLLSIYNPNHFDVDLDKGSGTFKHNDKIVGNWKIPDGTAIKASSITDLPLRCTVIPDEWEAVALAKEYYQGTL--VLDAQVEAKIRMPSLFNYTFKANMDDYTVRVNDPNMMDRHLCACPQ 468
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BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: A0A5D6XXA1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXA1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.540e-19
Identity = 59/171 (34.50%), Postives = 90/171 (52.63%), Query Frame = 3 
Query:  513 TGIMAILAGCTVVVMFAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTMVFNPTLLA-GGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKVADAVEYDRSLCNCTQM 1022
            TGI++++      +MF P +P  NVCN EFDW SI+ SL+  H + + Q+LIS  N N     +E G A +YH   +VG       L A  G +TD++  +  +    E   L   +    L F ++ATIS S+++   K Y  + SV++  I+     EYDR LCN + +
Sbjct:  221 TGILSLVGITVFALMFYPRVPDYNVCNREFDWESILQSLRSFHPKIEYQVLISAINENRFGFLLEEGKADIYHNGSRVGYWKLEAPLEAKAGAITDVIAPIRIEPGYSEAYSLWTAFRNNELIFRINATISGSIMWGSHKVYDISTSVDD--IEFLVGAEYDRGLCNVSTL 389
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BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: A0A067CJG4_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJG4_SAPPC)

HSP 1 Score: 94.7 bits (234), Expect = 4.590e-17
Identity = 52/159 (32.70%), Postives = 82/159 (51.57%), Query Frame = 3 
Query:  543 TVVVMFAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTMVFNPTLLAGGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKVADAVEYDRSLCNCTQ 1019
            T  +M+ P IP   +CN +FDW SI  SL  VH + + Q+L S+ N N     +++G A ++H+  +VGT          G VTDM+  +  D    E   L  +++ GTL F ++ TIS S+ +  +  Y    +V +  I+     +Y R LC CT+
Sbjct:  189 TFSLMYYPRIPEYQICNQQFDWASIFQSLVSVHPKINYQILTSVSNENRFAFFLKAGDADIHHRGTKVGTWTIRNWTAEAGAVTDMMADVRIDPGYTEAYGLLRDFQAGTLVFQINTTISGSIKWGNYTIYDIETAVPS--IEFLVGAKYPRDLCKCTE 345
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BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: A0A8K1C443_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C443_PYTOL)

HSP 1 Score: 94.0 bits (232), Expect = 9.420e-17
Identity = 96/351 (27.35%), Postives = 157/351 (44.73%), Query Frame = 3 
Query:    3 CVYG-TYCYNNDQCERKVPEYRGYASPSIAVLLGVCLVG-------GTSIFCAMAVLSVAREYANQSAEARATAAASYMAPSAPPEAQSSNRDGYMMLSGADGTDGTEDGSSAHAEAEVGSTKGKRPAAVGGGLAAATRAPRGLSRSRRGRAGVAAAAEPGPSRLARKILGFTRCVAGTGIMAILAGCTVVVMFAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTMVFNPTLLA-GGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKVADAVEYDRSLCNCTQMMQ 1028
            C+ G + C++ + CER+ P++ GY  P   V+  +CLV        G S  C++ + S AR    +   A  TAA     P++P +++        +LS  D     ED S    E +V     +R                 L+R            E   SR++ K    T C   T + A++    + +MF P +P  NVCN +F+W SI+ SL+ +  + +  +LIS+ N N     +E G A +YH    VG    N T  A  G ++D++  +  D    E   L   +    L F ++A+I+ S+ +   K Y  + +V +  I+     EYDR LC CT+ ++
Sbjct:   67 CITGISQCHHLEDCERQEPQHVGYGPPPSVVIAVLCLVVTLTCCLCGLSAICSVFLRS-ARRRRQKPRNATPTAATE---PASPDQSE-------PLLSTID-----EDESILTFEEDVDGVAIER-----------------LNRLHE---------ERSSSRVSWK----TVCFRLTWLGALVVVTVLALMFYPRMPDYNVCNRQFEWESILQSLRHLSPKIEYDVLISVINENRFGFVLEKGRADIYHNETWVGRWELNQTWEAKAGAISDVIAPIRLDPGYAEGIALWNAFRKNELIFRINASITGSITWGHHKIYRISSAVPD--IEFLVGAEYDRGLCKCTEYLE 369
[Close]
BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: A0A2D4BZI2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZI2_PYTIN)

HSP 1 Score: 86.3 bits (212), Expect = 2.930e-14
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = 3 
Query:  546 VVVMFAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTMVFNPTLLA-GGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKVADAVEYDRSLCNC 1013
            + +MF P +P  NVCN +F+W SI  S+  +  + +  +LIS+ N N     +ESG A +YH    VG  V N T  A  G ++D++  +       E   L  ++    L F ++ATI+ S+ +  +K Y  T +V +  I+     EYDR LC C
Sbjct:  201 LALMFYPRMPDYNVCNRQFEWESIFQSIXHLSPKIEYNVLISVINXNRFGFVVESGHADIYHNTEWVGEWVVNQTWEAKAGSISDVIAPIRLTPGYKEGIALWNDFYKNQLIFRINATITGSITWGSYKIYRITSNVPD--IEFLVGAEYDRGLCMC 355
[Close]
BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Match: A0A7S4WA13_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WA13_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.380e-13
Identity = 48/163 (29.45%), Postives = 78/163 (47.85%), Query Frame = 3 
Query:  552 VMFAPHIPGVNVCNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKHLQVGTMVF-NPTLLAGGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLMDATISASVLFHGFKTYPFTFSVNNYYIKV------ADAVEYDRSLCNCTQ 1019
            VMF P +P  N+CN E  W   + S+K + ++  ++LLIS+YNPN  + +++  +  L H    VG   F + T +    +TD  L  +   + WE   L  E+  GTL  ++DA I A +       Y F  ++++Y + +             R LC C Q
Sbjct:  199 VMFFPKLPEYNICNQEVGWSKTIESMKSMELDLSIELLISLYNPNYFDVDLDKASGALKHNDKFVGKWAFPDGTSIKANSITDFPLKCAIIPDKWEALALAEEFYKGTL--VLDAQIDAHIRMPSLLNYTFKANMDDYAVTINRNDPALSGGGIHRHLCACPQ 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig572.13271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5L3X4_9PHAE5.410e-10953.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K8Z7T5_NANGC8.220e-3432.10Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S2XY72_9STRA1.000e-2132.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3WID0_GLOUD5.010e-2036.47Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S2MD85_9STRA6.240e-2031.69Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A5D6XXA1_9STRA2.540e-1934.50Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A067CJG4_SAPPC4.590e-1732.70Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A8K1C443_PYTOL9.420e-1727.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BZI2_PYTIN2.930e-1433.12Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S4WA13_9STRA1.380e-1329.45Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig572contigH-paniculata_contig572:28185..33043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score282.3
Seed ortholog evalue2.9e-73
Seed eggNOG ortholog2880.D8LSA4
Hectar predicted targeting categoryother localisation
EggNOG OGs28NN6@1,2QV7X@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004250.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2782
Cds size1020
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig572.13271.1prot_H-paniculata_contig572.13271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig572 28841..31418 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930614.9700031-UTR-H-paniculata_contig572:28184..282221622930614.9700031-UTR-H-paniculata_contig572:28184..28222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig572 28185..28222 +
1691481373.3555884-UTR-H-paniculata_contig572:28184..282221691481373.3555884-UTR-H-paniculata_contig572:28184..28222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig572 28185..28222 +
1622930614.9867973-UTR-H-paniculata_contig572:28741..288401622930614.9867973-UTR-H-paniculata_contig572:28741..28840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig572 28742..28840 +
1691481373.3659651-UTR-H-paniculata_contig572:28741..288401691481373.3659651-UTR-H-paniculata_contig572:28741..28840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig572 28742..28840 +
1622930615.1146686-UTR-H-paniculata_contig572:31418..330431622930615.1146686-UTR-H-paniculata_contig572:31418..33043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig572 31419..33043 +
1691481373.4311063-UTR-H-paniculata_contig572:31418..330431691481373.4311063-UTR-H-paniculata_contig572:31418..33043Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig572 31419..33043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930615.0065384-CDS-H-paniculata_contig572:28840..290351622930615.0065384-CDS-H-paniculata_contig572:28840..29035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 28841..29035 +
1691481373.3756976-CDS-H-paniculata_contig572:28840..290351691481373.3756976-CDS-H-paniculata_contig572:28840..29035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 28841..29035 +
1622930615.025095-CDS-H-paniculata_contig572:29680..299561622930615.025095-CDS-H-paniculata_contig572:29680..29956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 29681..29956 +
1691481373.3918812-CDS-H-paniculata_contig572:29680..299561691481373.3918812-CDS-H-paniculata_contig572:29680..29956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 29681..29956 +
1622930615.0539715-CDS-H-paniculata_contig572:30150..302851622930615.0539715-CDS-H-paniculata_contig572:30150..30285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 30151..30285 +
1691481373.4042077-CDS-H-paniculata_contig572:30150..302851691481373.4042077-CDS-H-paniculata_contig572:30150..30285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 30151..30285 +
1622930615.0734537-CDS-H-paniculata_contig572:30687..307931622930615.0734537-CDS-H-paniculata_contig572:30687..30793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 30688..30793 +
1691481373.41329-CDS-H-paniculata_contig572:30687..307931691481373.41329-CDS-H-paniculata_contig572:30687..30793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 30688..30793 +
1622930615.0909944-CDS-H-paniculata_contig572:31110..314181622930615.0909944-CDS-H-paniculata_contig572:31110..31418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 31111..31418 +
1691481373.421834-CDS-H-paniculata_contig572:31110..314181691481373.421834-CDS-H-paniculata_contig572:31110..31418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig572 31111..31418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig572.13271.1

>prot_H-paniculata_contig572.13271.1 ID=prot_H-paniculata_contig572.13271.1|Name=mRNA_H-paniculata_contig572.13271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=340bp
MAVLSVAREYANQSAEARATAAASYMAPSAPPEAQSSNRDGYMMLSGADG
TDGTEDGSSAHAEAEVGSTKGKRPAAVGGGLAAATRAPRGLSRSRRGRAG
VAAAAEPGPSRLARKILGFTRCVAGTGIMAILAGCTVVVMFAPHIPGVNV
CNTEFDWGSIVNSLKKVHVEADVQLLISIYNPNMLNAEIESGTAVLYHKH
LQVGTMVFNPTLLAGGYVTDMLLTLSFDGEAWEEADLGLEYETGTLAFLM
DATISASVLFHGFKTYPFTFSVNNYYIKVADAVEYDRSLCNCTQMMQGKR
PPLPADLPAFAPLPDSSDRNDDQNLLVLPEMSDEGTALQ*
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mRNA from alignment at H-paniculata_contig572:28185..33043+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig572.13271.1 ID=mRNA_H-paniculata_contig572.13271.1|Name=mRNA_H-paniculata_contig572.13271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4859bp|location=Sequence derived from alignment at H-paniculata_contig572:28185..33043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCGTGTACGGGACCTACTGCTACAACAACGACCAGGTGAATAGAATA
GGGCGTGTTTTCTCTAGCTGGATAATTAGTGACAGGTGTTCGTTTTCTTT
CTGGCATGATCGTGGTTGTGGTTGTGACGTCAAAGGTTTGTTTGCCGGTT
TCTGACAAATGGTGACATAGAATTATACTATACAGGTTTGCTGTATAGTC
TCGCGCGTGCTGTCTTTTCTTCAGCTGTTGGACTCTGCCCAAACACGAGC
GAACTCATTCACCATGAGCTCCTAGTTAAAAGGTGACGAGGTTCTTGTAT
CACTTTCTATTATAATATTTGTATGAGATATATACGAGGGTATAATCATA
CACACACATACACACGCACACCACGGGCCAAGGGACAGGCAATCCGCTTT
TTATAGATGGAAGGAGGAGAAAAGTGCCCCCCCCGCCACCCGTCCCTTTG
AGAAGGTGTAGTCAATCGCTTACCGTATTAGTCATGCAAAGCATGAGCAA
CCTGCGAAGTATGAGTCCCCCTCCCCCCTCGCGACCCTGACCATCGTTAT
ATCTCAGTGTGAGCGCAAAGTCCCGGAGTACCGAGGCTACGCCTCCCCGT
CTATCGCGGTTCTCCTGGGCGTGTGCCTCGTCGGCGGAACCTCTATATTT
TGCGCCATGGCTGTCCTATCCGTCGCCCGTGAGTACGCCAACCAATCCGC
CGAAGCGCGCGCAACCGCAGCTGCGTCGTACATGGCACCCTCGGCGCCGC
CTGAGGCGCAGTCCTCCAATCGTGACGGTTACATGATGCTCTCTGGAGCC
GATGGTACGGATGGCACTGAGGATGGTTCAAGCGCTCATGCGGAGGCCGA
GGTGTGCTTGGTTATCCAAACCATGTTCATTTTCACGACGGGCGGGGTTG
ACCTGAAGGGAGCGCGGGGTACCCAGAGTTTGGACTTGGCGTGGTTGGTC
GACTCTCCGTTGTTTTTCACATGTTTTTTTATTTGATTTATGATGCCCGA
GTAACATTTTTTTATGTGGGTAAAAAGTTCGAGGACAATTTTTTGAGAGC
GTAATTAGTGAACGCTTTGCAGCTGCGAAAGAGGTGCATGAACACTCGAT
AAATAAGCTACACTAGATAACAAACCAGCTAAGGGTGGGCAGTGAGTAAG
CCGAACACATGGAGCATCACAGTATGTGACAGCGTTCTACTGCAGTTACA
ATGTAGTCCACGAGTGAGTAAGCGCATCAATAAGTTCGAGGCAACATGAT
CCATCTACGCCCTCTGCTGCAGTGTGTATTATGGTCATTTTTTCAAGAGG
CGTATGATGACGTTCATTATACCAGTCACTGATTGAAGCACCTCTAACCA
TAACCTTCTCGTAGAGTTGAAGCTGCTTCCTGTTTTGTGGTAAGCGGGCT
GACAATTGACGTCCCCCCCCAATTGAGTAACCATGCCCTGCATTCGTCGA
GCATTCCGCACTATTTTCCTTAGTTTGCCTTCGGACACATGCACAGGTGG
GTTCTACAAAGGGCAAAAGGCCTGCGGCAGTTGGGGGGGGTCTGGCGGCG
GCTACAAGGGCGCCTCGAGGGCTTAGTCGTAGCCGGCGCGGTCGGGCGGG
AGTGGCGGCTGCCGCTGAGCCGGGGCCAAGCCGTCTCGCGCGCAAAATCT
TGGGGTTCACGCGGTGTGTGGCAGGGACCGGGATCATGGCGATACTCGCG
GGTTGCACTGTGGTGGTGATGTTCGCTCCGCACATCCCAGGGGTTAATGT
GTGCAACACGGAGTTCGATTGGGTGAGGAAGCCGCTGCTTTTGCTCCATC
CCACAGTCAACTTCGTCCCGTGCGTATTTGCCTCTCTGTCAAATCGCGAC
AGTTACATTTTCTGACGCTTCCCGCAGGACTGTTTTCGCATATCCCGTTG
CTTTTGCGCTGTCGGCTTTGAAAAATAAAATGTAAAACCGTGTGTTCTGT
CACGCTGCCTGCGCAGGGGTCGATCGTGAACTCCCTCAAGAAGGTGCACG
TCGAGGCCGACGTTCAGCTCTTGATCAGCATCTACAACCCCAACATGCTC
AATGCCGAGATTGAGAGTGGCACCGCTGTTCTTTACCATAAGCACCTTCA
GGTGAACGAATTGTGGATGCAAAGCATGTGTACTATACCGTGTTGTGTGC
ACGCGCACGGTACTGCAGCATGTAGCCAGAGGGTTACGCTGTGCCTTTTT
TTTTTATCTGCTTGAGATCCGAACGGAACATGGGTGAATATGATGCTTCT
CTTTTGAGCTCATCTCCTACGTTCTGTGCTTTGTTTTTTGGGGAGGGGAG
GGAGGGGCATAGTAGTGACGGTAGTACGCGGAGGTCTTGGTCTCTTGTTG
ACGCCATGTGGTTCTCGCGGTTACCCTCGAGACGCTGAACGTTTCGATAG
CCTGCTCGCGCAGTCTACTGTAACTGTATCGTGCTTCCCTTTTTGTGCAT
CGTTTTCGGTCGGTATGTGCTGCTCTTCTCCTCTTTGTGCTGCCTGGTAA
AAGGTGGGAACGATGGTATTCAACCCTACCTTGCTGGCCGGCGGCTACGT
CACAGACATGCTCTTGACGTTGTCTTTCGATGGCGAGGCTTGGGAAGAGG
CGGACCTCGGTAAGAAGCACCGCGGTCTGAGCCTGGAGGGGACACTGCTC
ATTGGTAGCAAGAGAACTGACGCCCACTTCGGCAACTGACTGTTGATGCT
GTTGGTGCTGCTGGCCCTTCGTCATTGCGTTCTCGTTTGTATTCGATCTG
CTAAACTCCCAAGCTCGGAAAGATATAATCGCGAGGGCATGTGGTTTGAA
GTCATAATACCTCAGTAGTATTAACCTTTGTCCACAATGTAATGTTAAAA
AAAATAATATTTTGCCAAATAACCTCCTGGTCGTGGTTGATCGTTGTGGT
CTGTTTTTTTTTTTTTTCCACGACAGGATTGGAGTATGAAACAGGTACTC
TCGCCTTCCTCATGGACGCCACGATATCAGCGTCCGTTCTGTTCCATGGC
TTCAAGACCTACCCTTTCACCTTCAGCGTCAACAACTACTACATCAAGGT
TGCTGATGCCGTGGAGTACGACCGGAGTCTGTGCAACTGCACGCAGATGA
TGCAGGGTAAGCGCCCGCCGCTGCCTGCTGACCTTCCCGCCTTTGCCCCT
CTGCCCGATAGCTCTGACAGGAACGACGATCAAAATCTGTTGGTGTTGCC
AGAGATGAGCGACGAGGGGACAGCTCTGCAGTAAAAGCGTGCTGGGATGG
TGCTATGTGTGTATTTGTATTTATGCCAAGTTAGATCGGGTAATTGTACA
CCTTGGGAGAGATTAAGATTTCGTGCCCACAGTTTTTCTGTTGTGGAAAC
TGGAGGCATTGGTCGGTCGGCGGAACAAAGGCCCCCTTTTTAGTGTTTCC
CAACATTTCCATTCTTTACTCGGTTGTTTCGGCTGTGTGTTTTTTCTGTG
TGTATTTCTCTTTTGGCCCTGACTTGTTTCGCAAGGAGGATTCATCATGT
GTCATCAGTCTGTTTGCTCGTTCGCCGGTCGAGTGGTCAGTTGCCCCCGT
AGCTCGAGATATTTCGTTGTGATTTTGGCGTTGCGCTGGCTGTTGGAACG
CTTGGACTTCTACGATGATCATCTGCATGGCATATTGACTTGCATGAATG
TTACCACCGAACTATATATTTTTAAGATTCAAGATTGACCTCTGTGTGGC
AATGGCAGATAGGGGGTAGGATAGAAAGACTAAGGGCAGTTGCGGCCTGA
GACTCGCATCTTGGCTGTTGCTCGAGGACACTTTTTTTTCTTTTTTTTAA
ATTTTTTAATTCAACGTGTTTCGGTCAAGGGTTTTGCCAGCAATGGTGCC
TGACTTGAACGTAGGTTTCACGGTGTGGTGTCTTATTGGGGGCCATGCCC
AGTTTGTCTTGAATGTGTGACGTGTAGTGGGACCACAAGAGTAGAAGGGA
AAAATTGTCACGTTGAATATTGCAGTTGCAAGTTTGTTGTAAGAGAGACA
GCGGGTAGGGCGGCTTGATGTTTCGCACGAATTTCAATGGTTGCGTTCTT
TTTTTTTTTTCATTTTTTGTAAATATTTATTCCGTACGTGGGCACTTTCG
GGGTGCCGCACTCTATGGGTGTAAATTCTGGTGCCCGTGCTACCTGTTGA
GTTTTGTGGCGTTTTCAAGCAGATGTAAGATGGCGTGTGATGGTCTAACC
AAATCTCGATGCTTTTCTTATGCTGCCTTGTGTGTAGTTCAGTCGGGTGT
ATAGATGTTTGCCGTCCGCTATTAATACGAGTAGTGAGAAACCTTTGGTT
GAGCCGAGGCTCAAACCTCATTTCGGGTGGTAGATCGAACTCCATCTCTT
ATATGCCAGCTCCTCATTGGCCAAAGATATGAAGCAATGGTTCGTCTTAC
ATGTGAGTTGGATCTGATGTGCGTACATAGCACAGTACACCAACGGCATG
GCGTTTTCGCTTTCCTGCTCCCTCCAAACATGAGTCGTAAATGGGAAATT
GGTAGTTCCAGCAGTGAATTTTGTGGGGATCCAAAAGGGAACTAACTAGA
AGGGTATTCCATTAGAATCTAGGTTGAAAGGGAACAACGACGAGGTTTCT
ATTCAAAATGCGGAGGTGTCCATTGGTTGGTATGCCTTACTTTAGCGTAT
TTCTGAACTACCGAGCGCAGGTTTATCGCATTTTTCGTCTTTCTTCGGTT
GGGTTGTATCTGGTGTAACGAGTTTCTAAATATGACCGCCTTTCATCCAG
TGGCACAATTAAATCATACTTGTAAGATGCACCTGGTCATAGTTCGGTGG
ATTGTGTCGTCTGGAGAGCACAGATGATCCACTGCGTGGCGATCCCGTAC
TCCGGGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig572:28185..33043+

>mRNA_H-paniculata_contig572.13271.1 ID=mRNA_H-paniculata_contig572.13271.1|Name=mRNA_H-paniculata_contig572.13271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2040bp|location=Sequence derived from alignment at H-paniculata_contig572:28185..33043+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTCCTATCCGTCGCCCGTGAGTACGCCAACCAATCCGCCGAAGC
GCGCGCAACCGCAGCTGCGTCGTACATGGCACCCTCGGCGCCGCCTGAGG
CGCAGTCCTCCAATCGTGACGGTTACATGATGCTCTCTGGAGCCGATGGT
ACGGATGGCACTGAGGATGGTTCAAGCGCTCATGCGGAGGCCGAGATGGC
TGTCCTATCCGTCGCCCGTGAGTACGCCAACCAATCCGCCGAAGCGCGCG
CAACCGCAGCTGCGTCGTACATGGCACCCTCGGCGCCGCCTGAGGCGCAG
TCCTCCAATCGTGACGGTTACATGATGCTCTCTGGAGCCGATGGTACGGA
TGGCACTGAGGATGGTTCAAGCGCTCATGCGGAGGCCGAGGTGGGTTCTA
CAAAGGGCAAAAGGCCTGCGGCAGTTGGGGGGGGTCTGGCGGCGGCTACA
AGGGCGCCTCGAGGGCTTAGTCGTAGCCGGCGCGGTCGGGCGGGAGTGGC
GGCTGCCGCTGAGCCGGGGCCAAGCCGTCTCGCGCGCAAAATCTTGGGGT
TCACGCGGTGTGTGGCAGGGACCGGGATCATGGCGATACTCGCGGGTTGC
ACTGTGGTGGTGATGTTCGCTCCGCACATCCCAGGGGTTAATGTGTGCAA
CACGGAGTTCGATTGGGTGGGTTCTACAAAGGGCAAAAGGCCTGCGGCAG
TTGGGGGGGGTCTGGCGGCGGCTACAAGGGCGCCTCGAGGGCTTAGTCGT
AGCCGGCGCGGTCGGGCGGGAGTGGCGGCTGCCGCTGAGCCGGGGCCAAG
CCGTCTCGCGCGCAAAATCTTGGGGTTCACGCGGTGTGTGGCAGGGACCG
GGATCATGGCGATACTCGCGGGTTGCACTGTGGTGGTGATGTTCGCTCCG
CACATCCCAGGGGTTAATGTGTGCAACACGGAGTTCGATTGGGGGTCGAT
CGTGAACTCCCTCAAGAAGGTGCACGTCGAGGCCGACGTTCAGCTCTTGA
TCAGCATCTACAACCCCAACATGCTCAATGCCGAGATTGAGAGTGGCACC
GCTGTTCTTTACCATAAGCACCTTCAGGGGTCGATCGTGAACTCCCTCAA
GAAGGTGCACGTCGAGGCCGACGTTCAGCTCTTGATCAGCATCTACAACC
CCAACATGCTCAATGCCGAGATTGAGAGTGGCACCGCTGTTCTTTACCAT
AAGCACCTTCAGGTGGGAACGATGGTATTCAACCCTACCTTGCTGGCCGG
CGGCTACGTCACAGACATGCTCTTGACGTTGTCTTTCGATGGCGAGGCTT
GGGAAGAGGCGGACCTCGGTGGGAACGATGGTATTCAACCCTACCTTGCT
GGCCGGCGGCTACGTCACAGACATGCTCTTGACGTTGTCTTTCGATGGCG
AGGCTTGGGAAGAGGCGGACCTCGGATTGGAGTATGAAACAGGTACTCTC
GCCTTCCTCATGGACGCCACGATATCAGCGTCCGTTCTGTTCCATGGCTT
CAAGACCTACCCTTTCACCTTCAGCGTCAACAACTACTACATCAAGGTTG
CTGATGCCGTGGAGTACGACCGGAGTCTGTGCAACTGCACGCAGATGATG
CAGGGTAAGCGCCCGCCGCTGCCTGCTGACCTTCCCGCCTTTGCCCCTCT
GCCCGATAGCTCTGACAGGAACGACGATCAAAATCTGTTGGTGTTGCCAG
AGATGAGCGACGAGGGGACAGCTCTGCAGTAAGATTGGAGTATGAAACAG
GTACTCTCGCCTTCCTCATGGACGCCACGATATCAGCGTCCGTTCTGTTC
CATGGCTTCAAGACCTACCCTTTCACCTTCAGCGTCAACAACTACTACAT
CAAGGTTGCTGATGCCGTGGAGTACGACCGGAGTCTGTGCAACTGCACGC
AGATGATGCAGGGTAAGCGCCCGCCGCTGCCTGCTGACCTTCCCGCCTTT
GCCCCTCTGCCCGATAGCTCTGACAGGAACGACGATCAAAATCTGTTGGT
GTTGCCAGAGATGAGCGACGAGGGGACAGCTCTGCAGTAA
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