mRNA_H-paniculata_contig57194.13270.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57194.13270.1
Unique NamemRNA_H-paniculata_contig57194.13270.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57194.13270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57194contigH-paniculata_contig57194:546..941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930614.9085865-CDS-H-paniculata_contig57194:545..9411622930614.9085865-CDS-H-paniculata_contig57194:545..941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57194 546..941 -
1691481373.3432817-CDS-H-paniculata_contig57194:545..9411691481373.3432817-CDS-H-paniculata_contig57194:545..941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57194 546..941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57194.13270.1prot_H-paniculata_contig57194.13270.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57194 546..941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57194.13270.1

>prot_H-paniculata_contig57194.13270.1 ID=prot_H-paniculata_contig57194.13270.1|Name=mRNA_H-paniculata_contig57194.13270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
KGDDQKKTKKDRGLCWVCGSSEHIARRCPKRHHDTNEGIVALLAIIKGPK
AMTTVTDDRKTIGNPAVTREKEHWNLDTGATDHMTSDEIAFEDYTPALPG
TMCEIANRTFVPVEGWGRLVLLVSQPGETRG*
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mRNA from alignment at H-paniculata_contig57194:546..941-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57194.13270.1 ID=mRNA_H-paniculata_contig57194.13270.1|Name=mRNA_H-paniculata_contig57194.13270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig57194:546..941- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGGAGACGATCAAAAGAAAACGAAAAAGGATCGAGGCCTGTGCTGGGT
GTGCGGTAGCTCAGAGCACATCGCGAGACGGTGCCCGAAACGCCACCACG
ATACCAACGAAGGAATAGTTGCACTCCTGGCTATCATAAAAGGACCCAAG
GCAATGACGACCGTAACTGACGATCGCAAGACAATAGGCAACCCTGCCGT
GACCAGAGAGAAGGAACACTGGAATTTAGACACCGGCGCGACAGACCACA
TGACGTCGGATGAGATTGCGTTCGAGGACTACACTCCAGCGCTCCCGGGG
ACCATGTGTGAAATCGCCAACAGGACATTCGTGCCTGTAGAGGGGTGGGG
ACGCCTTGTTCTTCTAGTAAGTCAACCGGGGGAAACTCGCGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig57194:546..941-

>mRNA_H-paniculata_contig57194.13270.1 ID=mRNA_H-paniculata_contig57194.13270.1|Name=mRNA_H-paniculata_contig57194.13270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig57194:546..941- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGGAGACGATCAAAAGAAAACGAAAAAGGATCGAGGCCTGTGCTGGGT
GTGCGGTAGCTCAGAGCACATCGCGAGACGGTGCCCGAAACGCCACCACG
ATACCAACGAAGGAATAGTTGCACTCCTGGCTATCATAAAAGGACCCAAG
GCAATGACGACCGTAACTGACGATCGCAAGACAATAGGCAACCCTGCCGT
GACCAGAGAGAAGGAACACTGGAATTTAGACACCGGCGCGACAGACCACA
TGACGTCGGATGAGATTGCGTTCGAGGACTACACTCCAGCGCTCCCGGGG
ACCATGTGTGAAATCGCCAACAGGACATTCGTGCCTGTAGAGGGGTGGGG
ACGCCTTGTTCTTCTAGTAAGTCAACCGGGGGAAACTCGCGGGTAGAAAG
GAGACGATCAAAAGAAAACGAAAAAGGATCGAGGCCTGTGCTGGGTGTGC
GGTAGCTCAGAGCACATCGCGAGACGGTGCCCGAAACGCCACCACGATAC
CAACGAAGGAATAGTTGCACTCCTGGCTATCATAAAAGGACCCAAGGCAA
TGACGACCGTAACTGACGATCGCAAGACAATAGGCAACCCTGCCGTGACC
AGAGAGAAGGAACACTGGAATTTAGACACCGGCGCGACAGACCACATGAC
GTCGGATGAGATTGCGTTCGAGGACTACACTCCAGCGCTCCCGGGGACCA
TGTGTGAAATCGCCAACAGGACATTCGTGCCTGTAGAGGGGTGGGGACGC
CTTGTTCTTCTAGTAAGTCAACCGGGGGAAACTCGCGGGTAG
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