mRNA_H-paniculata_contig5716.13268.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5716.13268.1
Unique NamemRNA_H-paniculata_contig5716.13268.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5716.13268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5716contigH-paniculata_contig5716:5678..6041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930614.6709957-CDS-H-paniculata_contig5716:5677..59891622930614.6709957-CDS-H-paniculata_contig5716:5677..5989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5716 5678..5989 +
1691481373.2432067-CDS-H-paniculata_contig5716:5677..59891691481373.2432067-CDS-H-paniculata_contig5716:5677..5989Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5716 5678..5989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930614.696105-UTR-H-paniculata_contig5716:5989..60411622930614.696105-UTR-H-paniculata_contig5716:5989..6041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5716 5990..6041 +
1691481373.25189-UTR-H-paniculata_contig5716:5989..60411691481373.25189-UTR-H-paniculata_contig5716:5989..6041Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5716 5990..6041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5716.13268.1prot_H-paniculata_contig5716.13268.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5716 5678..5989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5716.13268.1

>prot_H-paniculata_contig5716.13268.1 ID=prot_H-paniculata_contig5716.13268.1|Name=mRNA_H-paniculata_contig5716.13268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
RKLLYTYTKIHCFCGEKWDLSVTQSAGPNALTPSSGKCVYAYAISNLQLD
DHVETFDLFFCLCADKNDLFTCCTNCIGAPERTYYRYKHDRTLQSHSMSR
LVE*
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mRNA from alignment at H-paniculata_contig5716:5678..6041+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5716.13268.1 ID=mRNA_H-paniculata_contig5716.13268.1|Name=mRNA_H-paniculata_contig5716.13268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=364bp|location=Sequence derived from alignment at H-paniculata_contig5716:5678..6041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAACTATTATATACATACACAAAGATACACTGCTTTTGCGGTGAAAA
ATGGGATCTGTCAGTCACTCAGTCAGCTGGACCTAACGCGCTGACTCCGT
CTTCTGGAAAATGTGTATATGCGTACGCGATAAGCAACCTGCAATTAGAC
GACCACGTGGAGACCTTCGACCTATTCTTCTGCCTTTGCGCTGACAAAAA
CGATCTTTTCACTTGTTGCACAAACTGCATTGGAGCACCCGAGAGAACAT
ACTACAGGTACAAACACGACCGTACACTGCAAAGCCACTCAATGTCTAGA
TTAGTTGAATGAGCAAATATCCAAGTCTATGTGAAAGGATTGAAAAAAAA
ATACTGATATTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5716:5678..6041+

>mRNA_H-paniculata_contig5716.13268.1 ID=mRNA_H-paniculata_contig5716.13268.1|Name=mRNA_H-paniculata_contig5716.13268.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig5716:5678..6041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAAACTATTATATACATACACAAAGATACACTGCTTTTGCGGTGAAAA
ATGGGATCTGTCAGTCACTCAGTCAGCTGGACCTAACGCGCTGACTCCGT
CTTCTGGAAAATGTGTATATGCGTACGCGATAAGCAACCTGCAATTAGAC
GACCACGTGGAGACCTTCGACCTATTCTTCTGCCTTTGCGCTGACAAAAA
CGATCTTTTCACTTGTTGCACAAACTGCATTGGAGCACCCGAGAGAACAT
ACTACAGGTACAAACACGACCGTACACTGCAAAGCCACTCAATGTCTAGA
TTAGTTGAATGAAGGAAACTATTATATACATACACAAAGATACACTGCTT
TTGCGGTGAAAAATGGGATCTGTCAGTCACTCAGTCAGCTGGACCTAACG
CGCTGACTCCGTCTTCTGGAAAATGTGTATATGCGTACGCGATAAGCAAC
CTGCAATTAGACGACCACGTGGAGACCTTCGACCTATTCTTCTGCCTTTG
CGCTGACAAAAACGATCTTTTCACTTGTTGCACAAACTGCATTGGAGCAC
CCGAGAGAACATACTACAGGTACAAACACGACCGTACACTGCAAAGCCAC
TCAATGTCTAGATTAGTTGAATGA
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