mRNA_H-paniculata_contig5715.13266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: D7G4Q4_ECTSI (Mtg2, mitochondrial Obg/CtgA-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q4_ECTSI) HSP 1 Score: 314 bits (805), Expect = 7.270e-101 Identity = 169/295 (57.29%), Postives = 202/295 (68.47%), Query Frame = 2
Query: 113 CSSGIGGSGXXXXXXASCVRHKTNGGVPRTKRKYEPGANKYQFVDKLRIVATGGKGGDGCISLEGESAIRKRPSGGSGGAGGRVFAVADKTLESLHSSEHHFNGAPXXXXXXXXXXXXXGKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASS----GTPSEGRREAGWTEGMDSAGEGDNERPKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGNLHVMSRNVGTKLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEYS 985
C G G G + V ++ GG P +R + Y+FVDKLRI+A+GGKGGDGCISLEG++ RKRPSGGSGGAGG V+A+AD +LE+L S HHFNG P GKD Y+RVPCGTLVSEV++E+++ FH WA+A G S + G G +SA +GD + E V+ VADLE GD VLLA+GG PGLGNLHV SR VGTK+PGQRGESR+Y ELRTIADVGL GYPNAGKSTLLGC+T+AKPKVA+YPFTTL+PVVG VEYS
Sbjct: 18 CHLGFGSPGCHAGVSSVLVLNRQAGGRPGKRRNHR---GDYKFVDKLRILASGGKGGDGCISLEGDNPTRKRPSGGSGGAGGNVYAIADGSLETLDSQLHHFNGQPGNAGGGSGKKGRTGKDAYIRVPCGTLVSEVVQEEEHYGFHPWALAGGIECGGEKSIAQGAEGEEGGEESAFDGDIYWGGDNGEEGEEEEVRYVADLEKDGDKVLLASGGKPGLGNLHVASRRVGTKIPGQRGESRHYRFELRTIADVGLVGYPNAGKSTLLGCITSAKPKVAMYPFTTLTPVVGHVEYS 309
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: A0A6H5KQG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQG3_9PHAE) HSP 1 Score: 207 bits (528), Expect = 2.760e-61 Identity = 111/176 (63.07%), Postives = 132/176 (75.00%), Query Frame = 2
Query: 470 GKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASS----GTPSEGRREAGWTEGMDSAGEGDNERPKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGNLHVMSRNVGTKLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEYS 985
GKD Y+RVPCGTLVSEV++E++ FH WA+A G S + G G +SA +GD+ + + + E V+ VADLE GD VLLA+GG PGLGNLHV SR VGTK+PGQRGESR+Y ELRTIADVGL GYPNAGKSTLLGC+T+AKPKVA+YPFTTL+PVVG VEYS
Sbjct: 17 GKDAYIRVPCGTLVSEVVQEEEKYGFHPWALAGGIECGGKKSIAQGAEGEEGGEESAFDGDSYWGE-DNHEEEEEEVRYVADLEKDGDKVLLASGGKPGLGNLHVASRRVGTKIPGQRGESRHYRFELRTIADVGLVGYPNAGKSTLLGCITSAKPKVAMYPFTTLTPVVGHVEYS 191
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: A0A024FZD6_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024FZD6_9STRA) HSP 1 Score: 178 bits (451), Expect = 2.480e-48 Identity = 112/280 (40.00%), Postives = 144/280 (51.43%), Query Frame = 2
Query: 173 HKTNGGVPRTKRKYEPGANKYQFVDKLRIVATGGKGGDGCISLEGESAIRKRPSGGSGGAGGRVFAVADKTLESLHSSEHHFNGAPXXXXXXXXXXXXXGKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASSGTPSEGRREAGWTEGMDSAGEGDNERPKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGNLHVMSRNV--GT--------KLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEY 982
HK+ P+ + K++FVD++RI GG GG+GC S E + + RKRPSGG GGAGG V AD ++ L SS HHF G G RVPCGT+V++V++E T G + TE +++ + DL+ HG+ + A GG PGLGN ++SR GT K GQ G S +Y LEL+TIADVGL GYPNAGKSTLL L+ A PK+A YPFTTL P VG VE+
Sbjct: 122 HKSTQNKPKKR-------GKHRFVDRIRIKVVGGYGGNGCCSFEAKKSFRKRPSGGHGGAGGAVIVQADSAVQDLASSTHHFKGERGQNGKPNAGAGRCGSACIFRVPCGTIVNKVIRE---------------TIGTGCEDFDITERLEN-----------------------ICDLDRHGNQFVAAEGGKPGLGNRVLLSRTTTFGTLRNKMDEGKNLGQPGTSHHYELELKTIADVGLVGYPNAGKSTLLSRLSRASPKIAPYPFTTLHPFVGIVEF 356
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: A0A0P1B492_PLAHL (Obg family gtpase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B492_PLAHL) HSP 1 Score: 175 bits (444), Expect = 7.830e-48 Identity = 104/262 (39.69%), Postives = 135/262 (51.53%), Query Frame = 2
Query: 227 NKYQFVDKLRIVATGGKGGDGCISLEGESAIRKRPSGGSGGAGGRVFAVADKTLESLHSSEHHFNGAPXXXXXXXXXXXXXGKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASSGTPSEGRREAGWTEGMDSAGEGDNERPKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGNLHVMSRNVGT----------KLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEY 982
+K +FVD++RI ATGG GG+GC S ES RKRP+GG GGAGG V A+ +++L ++ HHF G GK Y++VPCGTLV V + ++ D + V +++VADL+ G + L A GG PGLGN + + + K G G S+YY LEL+TIADVGL GYPNAGKSTLL L+ A P +A YPFTTL P VG VE+
Sbjct: 82 SKRRFVDRIRIKATGGHGGNGCASFVAESTTRKRPNGGHGGAGGDVIIEANDKVQNLANATHHFKGESGTNGMPNDSAGKRGKYCYVKVPCGTLVKRVERYEREMDTGEYEVVD--------------------------------------RMEVVADLDKPGTTFLAAKGGKPGLGNRILAGKTTKSGRLRKLMPENKTRGSPGTSQYYELELKTIADVGLVGYPNAGKSTLLSVLSRATPAIAPYPFTTLHPYVGIVEF 305
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: K3W6W2_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W6W2_GLOUD) HSP 1 Score: 173 bits (439), Expect = 1.060e-46 Identity = 105/262 (40.08%), Postives = 137/262 (52.29%), Query Frame = 2
Query: 227 NKYQFVDKLRIVATGGKGGDGCISLEGESAIRKRPSGGSGGAGGRVFAVADKTLESLHSSEHHFNGAPXXXXXXXXXXXXXGKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASSGTPSEGRREAGWTEGMDSAGEGDNERPKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGN--LHVMSRNVG--------TKLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEY 982
+K +FVD++RI ATGG GG+GC S ESA+RKRP+GG GGAGG V AD +++L ++ HHF G GK +++VPCGTLV V + ++ + + + ++ V DL+ G + L A GG PGLGN L + N G K G G S+YY LEL+TIADVGL GYPNAGKSTLL L+ A P++A YPFTTL P VG VE+
Sbjct: 116 SKRRFVDRIRIKATGGHGGNGCASFFSESAMRKRPNGGHGGAGGNVVIEADDCIQNLANATHHFKGGAGLNGMPNDAAGRRGKHCFVKVPCGTLVKRVKRFERELENGEFEIVDK--------------------------------------METVCDLDQPGATFLAAIGGKPGLGNRILAGKTTNFGRLRKHMPDNKGVGSPGTSQYYELELKTIADVGLVGYPNAGKSTLLSTLSRATPEIAPYPFTTLHPYVGIVEF 339
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: F0W392_9STRA (GTPase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W392_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.750e-46 Identity = 111/280 (39.64%), Postives = 139/280 (49.64%), Query Frame = 2
Query: 173 HKTNGGVPRTKRKYEPGANKYQFVDKLRIVATGGKGGDGCISLEGESAIRKRPSGGSGGAGGRVFAVADKTLESLHSSEHHFNGAPXXXXXXXXXXXXXGKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASSGTPSEGRREAGWTEGMDSAGEGDNERPKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGNLHVMSRNV--GT--------KLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEY 982
HKT +TK K K++FVD++RI A GG GG+GC S +++ KRPSGG GGAGG V AD ++ L SS HHF G G RVPCGT+V +V +E+ + + V ++ + DL+ HG + A GG PGLGN ++SR GT K GQ G S +Y LEL+ IADVGL GYPNAGKSTLL L+ A PKVA YPFTTL P VG VE+
Sbjct: 135 HKTT----QTKPKKH---GKHRFVDRIRIKAAGGYGGNGCCSFNAKNSFTKRPSGGHGGAGGAVIIQADSAVQDLASSTHHFKGGSGQNGKPNEGAGRCGSACIFRVPCGTIVKKVTREEIETECGDFDVFE--------------------------------------RLESIYDLDRHGSQFVAAEGGKPGLGNRVLLSRTTTFGTLKNKMDEGKNIGQPGTSNHYELELKIIADVGLVGYPNAGKSTLLSRLSRASPKVAPYPFTTLHPFVGIVEF 369
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: A0A3R7ITC1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7ITC1_9STRA) HSP 1 Score: 171 bits (434), Expect = 3.970e-46 Identity = 101/262 (38.55%), Postives = 134/262 (51.15%), Query Frame = 2
Query: 227 NKYQFVDKLRIVATGGKGGDGCISLEGESAIRKRPSGGSGGAGGRVFAVADKTLESLHSSEHHFNGAPXXXXXXXXXXXXXGKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASSGTPSEGRREAGWTEGMDSAGEGDNERPKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGNLHVMSRNVG----------TKLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEY 982
+K +FVD++R+ ATGG GG+GC S ESA RKRP+GG GAGG V A +++L ++ HHF G GK Y++VPCGTLV V + ++ + + + +++V DL+ G + L A GG PGLGN + + TK G G S+YY LEL+TIADVGL GYPNAGKSTLL L+ A P++A YPFTTL P VG VE+
Sbjct: 97 SKRRFVDRIRVKATGGHGGNGCASFFSESATRKRPNGGXXGAGGDVVIEASGKMQNLANATHHFKGGAGLNGMSNDAAGRRGKHCYVKVPCGTLVKRVERYERELENGEYEIVDQ--------------------------------------MEVVCDLDKPGSTFLAAQGGKPGLGNRILAGKTTKFGRLRKHMPETKGTGHPGTSQYYELELKTIADVGLVGYPNAGKSTLLSVLSRATPEIAPYPFTTLHPYVGIVEF 320
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: A0A8K1FEH5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEH5_PYTOL) HSP 1 Score: 168 bits (425), Expect = 1.350e-44 Identity = 109/299 (36.45%), Postives = 144/299 (48.16%), Query Frame = 2
Query: 119 SGIGGSGXXXXXXASCVRH-KTNGGVPRTKRKYEPGANKYQFVDKLRIVATGGKGGDGCISLEGESAIRKRPSGGSGGAGGRVFAVADKTLESLHSSEHHFNGAPXXXXXXXXXXXXXGKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASSGTPSEGRREAGWTEGMDSAGEGDNERPKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGN--LHVMSRNVGT--------KLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEY 982
+G+G G H K V R K +K +FVD++RI ATGG GG+GC S ESA+R+RP+G AGG V AD +++L ++ HHF G GKD ++VPCGT++ V + ++ D + + P V DL+ HG + + A GG PGLGN L + N G K G G S+YY LEL+TIADVGL GYPNAGKSTLL L+ A P++A YPFTTL P VG V++
Sbjct: 94 NGVGAEGFAAQTKRKVEEHVKQKVSVRRAKH------SKRRFVDRIRIKATGGHGGNGCASFFSESALRRRPNGXXXXAGGNVIIQADHRIQNLANATHHFKGGSGLNGMPNDAAGRRGKDCIVKVPCGTIIKRVDRYERDLDDGDFEIVDRMHP--------------------------------------VCDLDQHGTTFMAATGGKPGLGNRILAGKTTNFGRLRKYMPEGKGTGHPGTSQYYELELKTIADVGLVGYPNAGKSTLLSRLSRATPEIAPYPFTTLHPFVGIVDF 348
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: A0A7S3M2T8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2T8_9STRA) HSP 1 Score: 168 bits (426), Expect = 1.660e-44 Identity = 111/278 (39.93%), Postives = 143/278 (51.44%), Query Frame = 2
Query: 209 KYEPGANKYQFVDKLRIVATGGKGGDGCISLEGESAIRKRPSGGSGGAGGRVFAVADKTLESLHSSEHHFNGAPXXXXXXXXXXXXXGKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASSGTPSEGRREAGWTEGMDSAGEGDNER----PKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGNLHVMSRNVG---------------TKLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEYS 985
+Y G +F D+ +I GGKGG+GC+S E S RKR SGGSGG GG VF D + SL +HFNG G+DVY++VP GT++SE +++ D+ E +A EG + EGDN P+ EE + +++ L+A GG G+GN +M G T +PGQ GESR LEL+ IADVGL G+PNAGKS+LL L+NA PKVA Y FTTL P VG VEYS
Sbjct: 40 EYLDGHTAQRFADRAQIEVHGGKGGNGCVSHEILSPGRKRASGGSGGKGGNVFIQGDPNMFSLKFETYHFNGGNGRHGGSAGLTGRSGEDVYIKVPLGTIISERFPDEEDDEEDLSMYDDEEIFDESDLDATEEEGEGESEEGDNNGWELLPEGEEPVEDRSQGPEPVHIDNPRVVYLVARGGAAGIGNKMMMKSKNGSEAGGTNQQLQSMPKTYIPGQHGESRSLVLELKIIADVGLVGFPNAGKSSLLRALSNAVPKVASYRFTTLHPSVGVVEYS 317
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Match: A0A484DR68_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DR68_BRELC) HSP 1 Score: 165 bits (418), Expect = 7.380e-44 Identity = 107/265 (40.38%), Postives = 139/265 (52.45%), Query Frame = 2
Query: 227 NKYQFVDKLRIVATGGKGGDGCISLEGESAIRKRPSGGSGGAGGRVFAVADKTLESLHSSEHHFNGAPXXXXXXXXXXXXXGKDVYLRVPCGTLVSEVMKEDKYDDFHSWAVASSGTPSEGRREAGWTEGMDSAGEGDNERPKAEETDHEGYTVKLVADLEDHGDSVLLANGGVPGLGNLHV-------------MSRNVGTKLPGQRGESRYYSLELRTIADVGLAGYPNAGKSTLLGCLTNAKPKVALYPFTTLSPVVGQVEY 982
+K +FVD++R+ ATGG GG+GC S ESA RKRP+ AGG V A +++L ++ HHF G GK +L+VPCGTLV V ++Y+ H E+G E +D +++VADL+ G + L A+GG PGLGN + M N T LPG S+YY LEL+TIADVGL GYPNAGKSTLL L+ A P++A YPFTTL P VG VE+
Sbjct: 82 SKRRFVDRIRVKATGGHGGNGCASFFSESATRKRPNXXXXXAGGDVVIEASAQMQNLANATHHFKGGSGTNGMPNDAAGRRGKHCFLKVPCGTLVKRV---ERYEREH---------------ESGEFEIVDK--------------------MEIVADLDKPGTTFLAASGGKPGLGNRILAGKTTMFGQLRKHMPENKTTGLPGT---SQYYELELKTIADVGLVGYPNAGKSTLLSVLSCATPEIAPYPFTTLHPYVGIVEF 305 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5715.13266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5715.13266.1 >prot_H-paniculata_contig5715.13266.1 ID=prot_H-paniculata_contig5715.13266.1|Name=mRNA_H-paniculata_contig5715.13266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=322bp MLLLGRRCVVHTSLLPLRRISPYLPSLVDGHCSSGIGGSGGAAAAAASCVback to top mRNA from alignment at H-paniculata_contig5715:302..5190- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5715.13266.1 ID=mRNA_H-paniculata_contig5715.13266.1|Name=mRNA_H-paniculata_contig5715.13266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4889bp|location=Sequence derived from alignment at H-paniculata_contig5715:302..5190- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5715:302..5190- >mRNA_H-paniculata_contig5715.13266.1 ID=mRNA_H-paniculata_contig5715.13266.1|Name=mRNA_H-paniculata_contig5715.13266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig5715:302..5190- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |