mRNA_H-paniculata_contig5713.13265.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig5713.13265.1
Unique Name	mRNA_H-paniculata_contig5713.13265.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: D7FYS8_ECTSI (RNA binding motif and ELMO/CED-12 domain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS8_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 4.410e-131
Identity = 230/481 (47.82%), Postives = 303/481 (62.99%), Query Frame = 1

Query:    1 ENAFGIAYRPQGLVSPTTTQEYDLPSGQAFVDEDEFEAELSMEFRVAMS----GRIVSPQTCLMPA--FEGGQQVQEVNVGVRKHDQDEEGIDSQPDRESAAIENFDIRKEGSTALELVAEVYQAEGSATKVCVCDTPQ-VGSTFVAIGRHPTAVNTTKLKTIGGYSDDGEVIKFCAIQEEDEEALSDHAADGMDS---KTQGEEGAIVSHMQRQPEQQQEKRGDDLIR---VAQEWDAIDQLRTAENSVPMERGVGGALKPRFVDQKGKIVATSEVLAYFRSQDLSAYKSSIVSVEPRQQPWNLFRKHASLRISQAEKYRDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEKRVCPDEGPHWDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAFAAKLYRISTDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQYHAFLVLCRTKPATHHAVHLSKV 1404
            +NAFGIAY P   +  ++ + YDLPSG AFVDEDEFE E+S EFRV +     G I++  +    A  F  G    ++ +  ++      G + Q D  SA      +R +   AL+ + + Y+  G A  V   + PQ +  +   IG      + T     G     GE ++   + EE+                 +   + G +    +R+ E Q     D+  +   VA+EW+AIDQLRTAE SVPME+GVGG L+P  +DQ  ++V T+EVL YFRSQDL  +K++IV  +P +  + LFR+ + LR   AE+ RDEVF++AQ+ Y P DV+HRR++ TIYRRMT EKR CPD GPHWDTVGFQG+DP TDLNRSMGIF+L QVL LLE+Q  FA  LYR+S  DVTGWPF+CVSIGFTKEA+  LRRG CYAECN++ SV+ VVHELHQAQ+HAFL LCRT+PATHHA+HL+KV
Sbjct:    3 KNAFGIAYEP---LRGSSQKSYDLPSGPAFVDEDEFEQEMSAEFRVTVGPSRQGEILATMSNRTQADDFAEGDGTADITMRTQQGVPGGNGSERQEDVNSAPFYPDGLRLDNREALKQLTKDYKVAGVAPHVHPGNAPQRLDQSAKEIGGRSIERSLTD-NAAGILEFVGEDVRHYPVTEEEXXXXXXXXXXXXRKNLVEVPEKMGTLNVPGEREKEGQTSIDEDESAQRALVAKEWEAIDQLRTAERSVPMEKGVGGKLQPISIDQANRLVTTAEVLGYFRSQDLCTHKAAIVPYQPPESRFGLFRRASKLRFPDAEQLRDEVFILAQIKYAPADVVHRRLIQTIYRRMTNEKRACPDVGPHWDTVGFQGTDPCTDLNRSMGIFALFQVLHLLESQLGFAMVLYRLSLADVTGWPFMCVSIGFTKEALRVLRRGGCYAECNRRGSVLDVVHELHQAQFHAFLELCRTEPATHHALHLAKV 479

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: A0A836CIH2_9STRA (ELMO/CED-12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH2_9STRA)

HSP 1 Score: 216 bits (551), Expect = 5.110e-60
Identity = 168/476 (35.29%), Postives = 240/476 (50.42%), Query Frame = 1

Query:   10 FGIAYRPQGLVSPTTTQEYDLPSGQAFVDEDEFEAELSMEFRVAMSGRIVSPQTCLMPAFEGGQQVQEVNVGVRKHDQDEEGIDSQPDRESAAIENFDIRKEGSTALELVAEVYQAEGSATKVCVCDTPQVG--STFVAIGRH-PTAVNTTKLKTIGGYSDDGEVIKFCAIQE--EDEEALSDHAADGMDSKTQGEEGAIVSHMQRQPEQQQEKRGDDLIRVAQEWDAIDQLRTAENSVPMERGVGGALKPRFVDQKGKIVATSEVLAYFRSQDLSAYKSSIVSVEPRQQPWNLFRKHASLRIS--QAEKYRDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEKR-VC-PDEGPHWDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAFAAKLYRISTDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDS--VMKVVHELHQAQYHAFLVLCRTKPATHHAVHLSKV 1404
            FGIAY+P G       Q Y +P G  F DE +FE ELS EF  A+      P   +   F+        + G    +++ E +  Q  R +A +    +      A +  A+  QA+ S+  V   DT   G       +  H  TA N   L         G  +   A  +  +++ A ++   + + +  +GE G   + +Q        K+      +A EW AID L+ AE+            +P+F      +  +  ++A   S  L +++S+IV VE    P  L ++ A  R+S   A+  RDE+FLI QV Y P    HRR+L T+YR +TG    VC P+ G HWD +GFQG DP TDLNRS GI SL+QV+ LLE +P  AA+L R S   V GWP +CVSIGFTKEAV ALRRG  Y   N+ DS  +++++  +HQAQ+H F+  C  +P+ HHAVHL  V
Sbjct:  102 FGIAYKPYGAAQ----QAYVIPCGPLFSDERDFEQELSAEFAAALQTHSSGP---VQDDFD-------CDDGTVAANRETEWVAPQAVRTAAVVTAAAMPP---MAAKRAAD-SQAQHSSDSV-QHDTSTNGPQQQHEQLRSHCKTATNALTLALQEDIVPHGAPVLNAAAPDVMDNDSADAEEQPESLRALLRGETGEAAAELQETAATAARKQ------LAAEWQAIDTLQGAESLASFATP---GTEPQFSYTCPSVTLSEALMALRESGTLESHRSAIVPVEL---PSGLLKRLAVPRLSIPDADAQRDEIFLIGQVMYNPASFSHRRMLQTVYRGLTGSSAAVCAPETGSHWDAIGFQGLDPCTDLNRSQGILSLLQVMALLEARPEVAAQLMRDSA--VHGWPLMCVSIGFTKEAVAALRRGAIYGAANRHDSGDLLEILSHVHQAQFHDFMRRCHQEPSVHHAVHLCAV 544

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: A0A7S1TTY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTY8_9STRA)

HSP 1 Score: 143 bits (361), Expect = 9.210e-34
Identity = 74/160 (46.25%), Postives = 101/160 (63.12%), Query Frame = 1

Query:  922 RDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEKRVCPD-EGPHWDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAFAAKLYRISTDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQYHAFLVLCRTKPATHHAVHLS 1398
            RD  FL+A+V Y P    H   L  IY  +TG    CP   G HW+ VGFQG+DPRTDLNRS+G+ S++Q L  +E + A A +++R++    T WPFL VSI FTK A+ ALR G  YAECN++  VM+V+H+ HQA +H + +    +P T    HL+
Sbjct:  345 RDYPFLVAKVKYDPATETHSGALRAIYFHLTGV--ACPAIVGSHWEAVGFQGADPRTDLNRSLGMLSVLQALAFVEKRTAVAQRIFRLTKR--TYWPFLLVSINFTKHALDALRDGALYAECNRRAKVMEVLHDAHQAIFHRYYLKLTREPGTDGITHLN 500

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: A0A388KRF5_CHABU (ELMO domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KRF5_CHABU)

HSP 1 Score: 138 bits (347), Expect = 5.710e-32
Identity = 89/255 (34.90%), Postives = 134/255 (52.55%), Query Frame = 1

Query:  628 QEKRGDDLIRVAQEWDAIDQLRTAENSVPMERGVGGALKPRFV-----DQK---GKIVATSEVLAYFRSQDLSAYKSSIVSVEPRQQP-------WNLFRKHASLRISQAEKYRDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEKRVCPDEGPHWDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAFAAKLYRISTDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQYHAF 1347
            Q+K   + I  A+EWDA+  +R A ++     G    + P        D +    K+V   + L Y    DLS+Y SSIV VE R  P       W       +L      + R +VF  A++ +  TD MHRR+L ++Y R+TG+ R     G HW+T+GFQG DP TDL R  G+ +L+Q+L+ +E        +YR+S D   G+P   +SI  TK A+ +LR G    E N+Q+SV+ V+++ H+  +H F
Sbjct:  199 QDKEEAERIAHAREWDAV--MREAASAKISTTGQTVIISPLETVTTASDSREILSKLVVWKQALGYLAMLDLSSYMSSIV-VESRPPPRGMFGFLWRFCLGVQTLMDEGLIEERKKVFCFAKMPFIDTDEMHRRMLFSVYVRLTGDVRPVSRRGDHWETIGFQGKDPATDL-RGCGMLALLQLLYEVEDNAENMGCIYRLSLDGTHGFPLSIISINITKWALESLRAGTLSKEINKQNSVVNVINQFHKGAFHDF 449

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: A0A8J2SH64_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH64_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.370e-31
Identity = 76/205 (37.07%), Postives = 113/205 (55.12%), Query Frame = 1

Query:  763 KGKIVATSEVLAYFRSQDLSAYKSSIVSVEPRQQPW--NLFRKHASLRISQAEKYRDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEKRV--CPDEGPHWDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAFAAKLYRISTDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQYHAFLVLCRT 1365
            K + +   E L +F+  D+S+ +  I   +P Q+     +F++   L+   AE  RD VFL+A   Y P   +H R++HT++R +T + +   CP  G HW  +GFQG+DPRTD+NR+M   +L+Q+L LLE +   A  L+R +      WPF C SI FT+ AV  LR G     CN    V+  +HE H A +  FL   R+
Sbjct:  373 KAEPITYDEALRHFQGLDMSSDQGKITPTQPDQRHLLKRIFKRRPDLKAPDAE--RDFVFLVALQKYDPRVPVHWRMIHTVFRELTPKNKPVPCPTLGAHWVRIGFQGNDPRTDVNRAMRCLALLQLLHLLEKERRLAGALFRAANQGGKDWPFACTSISFTRMAVQKLRSGKLNGSCNAL-GVLPALHECHAALFRDFLARIRS 574

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: UPI00186AE18A (ELMO domain-containing protein 3 isoform X1 n=3 Tax=Trichosurus vulpecula TaxID=9337 RepID=UPI00186AE18A)

HSP 1 Score: 128 bits (322), Expect = 2.640e-29
Identity = 83/249 (33.33%), Postives = 135/249 (54.22%), Query Frame = 1

Query:  646 DLIRVAQEWDAIDQLRTAENSVPMERGVGGALKPRFVDQKGKIVATSEVLAYFRSQDLSAYKSSIVSVEPRQQPWNLFRKH---ASLRISQAEKYRDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEKRVCPDEGPHWDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAF--AAKLYRISTDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQYHAFLVLCRTKPAT 1377
            +++R  +EW+A+      EN  P   G GG       D+ G++++  E L +F++ DLS Y+  + S+ PR++   LFR       LR    E+ RD V  IAQ      D +H R+L TIY+++TG +  C   G HW+ +GFQGS+P TDL R  G  +L+ +L+L+        A +++R+S   +  +PF  +S+  T+  + ALR      ECN+Q +V+ VV+ L+ A +     + RT+  T
Sbjct:   74 EVLRAQEEWEAV------ENIQP---GAGGW---ESRDRPGQLISFDEALQHFQTADLSVYRKKVKSMIPRRRFSTLFRCFFGPPQLRDGLQEE-RDLVLAIAQCGLDNEDPVHGRVLQTIYKKLTGSRFDCALYGTHWEELGFQGSNPATDL-RGAGFLALLHLLYLVMDSKTLLLAHEIFRLSQHRIQYFPFCLMSVNITRIVIQALREECLSKECNRQHTVIPVVNNLYAAAFLRLAYVWRTQQKT 308

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: A0A7S2W6W8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6W8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.080e-29
Identity = 71/157 (45.22%), Postives = 92/157 (58.60%), Query Frame = 1

Query:  895 LRISQAEKYRDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEK--------RVCPDEGPHWDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAFAAKLYRI--STDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQ 1335
            LR   A+  RD  FLIA V Y P D +H R+L T++ R+ G            CP  G HW+ +GFQG DPRTD+NRSM   +++QVL   ET P  AA+L R     D      F+C+SIGFT++A+ ALRRG  Y  C QQ  ++ VVH+ H AQ
Sbjct:  330 LRFENAKTERDLCFLIACVAYDPADDVHLRMLQTVFHRLMGHNVSSTGRPIDPCPVCGAHWEQIGFQGHDPRTDVNRSMKCLAVLQVLHWAETFPITAARLCRRCKEVDQFGANTFMCLSIGFTRDALQALRRGQSYYRCVQQRKILDVVHQCHHAQ 486

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: A0A7S1XMI1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMI1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.820e-29
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 1

Query: 1048 HWDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAFAAKLYRISTDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQYHAFLVLCRTKPATHHAVHLS 1398
            HW+ VGFQG+DPRTDLNRS+G+ S++Q L  +E + A A +++R++    T WPFL VSI FTK A+ ALR G  YAECN++  VM+V+H+ HQA +H + +    +P T    HL+
Sbjct:   11 HWEAVGFQGADPRTDLNRSLGMLSVLQALAFVEKRTAVAQRIFRLTKR--TYWPFLLVSINFTKHALDALRDGALYAECNRRAKVMEVLHDAHQAIFHRYYLKLTREPGTDGITHLN 125

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: C3Y479_BRAFL (ELMO domain-containing protein n=11 Tax=Branchiostoma TaxID=7737 RepID=C3Y479_BRAFL)

HSP 1 Score: 124 bits (312), Expect = 2.200e-28
Identity = 77/239 (32.22%), Postives = 130/239 (54.39%), Query Frame = 1

Query:  643 DDLIRVAQEWDAIDQLRTAENSVPMERGVGGALKPRFVDQKGKIVATSEVLAYFRSQDLSAYKSSIVSVEPRQQ-----PWNLFRKHASLRISQAEKYRDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEKRVCPDEGPHWDTVGFQGSDPRTDLNRSMGIFSLIQVL-FLLETQP-AFAAKLYRISTDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQY 1338
            +D++R  +EWDA++ ++    S+                 +  +++ +E LA+F+++DLS Y   I     R        W LF     L+ S  E+ R+ VF +    +  T+  H R+L T+Y+R+TG K  CP  G HW+ +GFQGSDP TDL R  G   L+QVL F++E +  + A  +Y++S  +   +PF  +SI  T+ A+ ALR G+   ECN++  ++ V+++ + A +
Sbjct:   25 EDVLRAQEEWDAVETVQPGTGSL---------------QNQSSLISFNEALAFFQTKDLSEYMMKIKPTVQRSGFTALCHW-LFGP-PRLQHSLHEE-RNLVFAMGLYPFDNTEETHMRVLQTVYKRLTGTKLDCPRYGGHWEQIGFQGSDPATDL-RGTGFLGLMQVLYFVMEPRTLSLARDIYKLSLHETQNFPFCVMSINITRIALQALREGNLSKECNRRQQIIAVINDFYVATF 244

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BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Match: A0A6L2PBT2_COPFO (ELMO domain-containing protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PBT2_COPFO)

HSP 1 Score: 122 bits (307), Expect = 7.560e-28
Identity = 72/197 (36.55%), Postives = 110/197 (55.84%), Query Frame = 1

Query:  775 VATSEVLAYFRSQDLSAYKSSIVSVEPRQQPWNLFRKHASLRISQAEKY------RDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEKRVCPDEGPHWDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAF--AAKLYRISTDDVTGWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQYH 1341
            +   + LAYF+  DL     S+V+     +P  L    + L +   E +      RD VF IAQ     ++ +H R+L T+Y+R+TG +  CP  G HW+ +GFQG+DP TDL R +G+  L+Q+L+L  T      A  +YR+S DD   +P   +S+  T+ A+ ALRRG+   ECN Q  V+ VV++ + A +H
Sbjct:   64 ITVHQALAYFQVHDLLVDSVSLVNDRGGVEPRGLCTLLSCL-LGPPELHDHLTAERDLVFAIAQRELDMSEPVHVRMLQTVYQRLTGTRLDCPHYGSHWEHIGFQGTDPGTDL-RGVGMLGLLQLLYLSNTPHLIPLARDIYRVSVDDQQNFPLAVMSLNMTRIALQALRRGELNRECNHQQLVLHVVNQFYVAVFH 258

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5713.13265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FYS8_ECTSI	4.410e-131	47.82	RNA binding motif and ELMO/CED-12 domain n=1 Tax=E...	[more]
A0A836CIH2_9STRA	5.110e-60	35.29	ELMO/CED-12 family-domain-containing protein n=1 T...	[more]
A0A7S1TTY8_9STRA	9.210e-34	46.25	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
A0A388KRF5_CHABU	5.710e-32	34.90	ELMO domain-containing protein n=1 Tax=Chara braun...	[more]
A0A8J2SH64_9STRA	1.370e-31	37.07	Hypothetical protein n=3 Tax=Pelagomonas calceolat...	[more]
UPI00186AE18A	2.640e-29	33.33	ELMO domain-containing protein 3 isoform X1 n=3 Ta...	[more]
A0A7S2W6W8_9STRA	3.080e-29	45.22	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S1XMI1_9STRA	5.820e-29	48.72	Hypothetical protein (Fragment) n=1 Tax=Phaeomonas...	[more]
C3Y479_BRAFL	2.200e-28	32.22	ELMO domain-containing protein n=11 Tax=Branchiost...	[more]
A0A6L2PBT2_COPFO	7.560e-28	36.55	ELMO domain-containing protein n=1 Tax=Coptotermes...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5713	contig	H-paniculata_contig5713:8773..13409 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	402.9
Seed ortholog evalue	2.1e-109
Seed eggNOG ortholog	2880.D7FYS8
Preferred name	ELMOD3
KEGG ko	ko:K04139
KEGG Pathway	ko04022,ko04080,map04022,map04080
Hectar predicted targeting category	other localisation
EggNOG free text desc.	ELMO domain-containing protein
EggNOG OGs	KOG2998@1,KOG2998@2759
Ec32 ortholog description	RNA binding motif and ELMO/CED-12 domain
Ec32 ortholog	Ec-19_002370.1
COG Functional cat.	Z
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko04030
Exons	8
Model size	1434
Cds size	1434
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5713.13265.1	prot_H-paniculata_contig5713.13265.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig5713 8773..13409 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig5713:8773..13409+
coding sequence from alignment at H-paniculata_contig5713:8773..13409+

protein sequence of mRNA_H-paniculata_contig5713.13265.1

>prot_H-paniculata_contig5713.13265.1 ID=prot_H-paniculata_contig5713.13265.1|Name=mRNA_H-paniculata_contig5713.13265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=478bp
ENAFGIAYRPQGLVSPTTTQEYDLPSGQAFVDEDEFEAELSMEFRVAMSG
RIVSPQTCLMPAFEGGQQVQEVNVGVRKHDQDEEGIDSQPDRESAAIENF
DIRKEGSTALELVAEVYQAEGSATKVCVCDTPQVGSTFVAIGRHPTAVNT
TKLKTIGGYSDDGEVIKFCAIQEEDEEALSDHAADGMDSKTQGEEGAIVS
HMQRQPEQQQEKRGDDLIRVAQEWDAIDQLRTAENSVPMERGVGGALKPR
FVDQKGKIVATSEVLAYFRSQDLSAYKSSIVSVEPRQQPWNLFRKHASLR
ISQAEKYRDEVFLIAQVHYTPTDVMHRRILHTIYRRMTGEKRVCPDEGPH
WDTVGFQGSDPRTDLNRSMGIFSLIQVLFLLETQPAFAAKLYRISTDDVT
GWPFLCVSIGFTKEAVGALRRGDCYAECNQQDSVMKVVHELHQAQYHAFL
VLCRTKPATHHAVHLSKVMRGRRLLIS*

mRNA from alignment at H-paniculata_contig5713:8773..13409+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig5713.13265.1 ID=mRNA_H-paniculata_contig5713.13265.1|Name=mRNA_H-paniculata_contig5713.13265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4637bp|location=Sequence derived from alignment at H-paniculata_contig5713:8773..13409+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAACGCATTCGGCATTGCTTACCGACCGCAAGGGTTGGTCTCACCAAC
AACCACCCAAGAATACGATCTACCTTCGGGACAGGCCTTTGTCGATGAGG
ACGAGTTCGAGGCGGAATTGAGCATGGAGTTTAGAGTAGCAATGTCAGGA
AGAATCGTTTCACCCCAGACTTGTTTGATGCCAGCTTTTGAAGGAGGCCA
ACAAGTACAAGAGGTTAACGTTGGGGTGCGCAAGCATGATCAAGATGAAG
AGGGCATAGACGTCTTTGGAAAAGTCACGCCCTGTAGTATCGCCGTTAAG
GTAAGTACCCATGAGGAGAAGGTCCTGCACGCCTTCACATGTCACCATAT
TTTGCCCTAATAATAAAAAGATCCAGCAGAAGAACATTAGCCAAGCGCAC
AGCACCTGCTTCTGGGATTTGGGTGCTTGAGGGTCGTTTGAAGGCGCGGC
ATCAGAGTATGAACATTAGCGGGTTGAAGATCTTGACTCCAGATTAGCTC
GATTGTCACGGCTCACTTGGCTTAGCTTCGTAAGTTGATAAGAGAATGAT
GTGAGTACTGGACCTCAACCATCTACTGCCCTCACCAAAAAACTAGTATC
GAAGCTCTTTAAACGCCATGGTGAGACACATGGTAAAGTAAACTGCTCGC
TTGTGCAGTCACAACCAGATAGGGAGTCCGCAGCAATCGAAAACTTTGAC
ATTCGAAAGGAAGGGTCAACAGCGCTCGAGTTAGTTGCAGAGGTATACCA
AGCTGAAGGATCCGCTACGAAGGTGTGTGTGTGTGTGTTTTGTGTGTTCT
CCTTCCTCATCGATTTGCGGTATAATGCTGTCCATATACGCTAGAGTGTG
TTGCATATGTTGCGATAGACCAGGCGGGCGCGTTCACAGCACCTACAAGT
ATACAGCATGCCAATACGTACCAAGGACACACGAAGAGTGTTACCGTTGT
TCGATCATCGTCATGAACACTTCTAATCATCCACCATAACTGAGCGTGTT
ATATTGGGATCCAAGCGAACCTTCCGGCGACCGGCCGCAGGTCAAATTCG
TTGAGAAGATTGTAGGTGATACCCCACAAGTAGGCAGCACATTCGTTGCC
ATCGGGCGGCATCCAACCGCTGTCAACACAACGAAACTAAAAACGATTGG
AGGATACTCTGACGATGGCGAGGTGATCAAATTCTGCGCGATACAAGAGG
AGGACGAAGAAGCACTATCTGATCATGCAGCCGATGGAATGGACAGTAAA
ACACAGGGCGAAGAAGGCGCGATCGTGTCGCACATGCAGCGTCAACCGGA
GCAACAGCAAGAGAAGAGGGGGGACGACCTCATAAGAGTAGCCCAGGAAT
GGGATGCGATTGACCAGGTAGGCATTGGCCTCGTGGTGACTTCAGCAAAA
ACTAGATACCCGACAACGATATACTCTTGTTGTTTCGAAACGTACGCAGC
GTTTTGACGAGTGTCATGACCATGACAAGTACGAAGCCTGGGCTCATTAG
AACGAGTTTGGCCAGCACCTACAAACCAAATGTTTACTTCCGGCGCCCAG
TGCTCCGTAGACTTCAAAACCACGTGCTGTGCGTGCAACCAAAGTGCCAA
CGATAGCGTTTGGTGCCTGCTAGGTGTTGCTGGATGTGGGAATGATGGAT
GTGCCCGAACCTAGCTAGGCAAAACATGCATCATAGTCAAATTCTTGTGG
CTGCCGCTGGCATCCAAGGAAGAACGCGTACATGCTGTACTTATGTCGTG
TGCTGTTTCTTGCCCGACCCTTTCCATGGTCACCTACGGAATAGCTGCGA
ACTGCGGAAAACTCGGTGCCGATGGAAAGAGGGGTCGGTGGCGCGCTAAA
GCCCCGCTTTGTCGACCAAAAGGGTAAAATTGTCGCCACGTCTGAGGTCT
TGGCGTATTTCCGTTCTCAGGTGAGGAGAAAAACTATACTTTGTCCCACA
GTGCAAGGCGACAGTGAATGCTGTTTTAGAATATATGACCGTCGATCAGC
AAGAGTTTTACGGGCATTTGACTGAATAACGAGCAATATCGATTAACGCG
GCCATGATAGTTAATGAGGTCGGCTGCCCCAGATCCGTCCGCTTGAACGT
TCTAGGTTATTGGTCCTTGACCAGACTGAAAGAATACCTGCGTTCTCTGC
GGTGTGAATCCATACGGGGCAAAGCTGAAGAACAAGCCAGGAACGGCGTT
GTCTATTTCCTTGCCCATCTCTGATCGCCCCCATGAAAATCACTCGAGAA
GAAAGAGGCTCTCAGTTTCATCGTCATTTGCTCACAGGTATGTACTCGAT
TTAAAGAACGCGAATAACATTTAACGTTCCGAACGTCCCATTACAATCGC
TCCGCTCAGGATCTCAGCGCGTACAAGTCCTCAATTGTCTCTGTAGAACC
CCGTCAGCAACCATGGAACTTGTTTCGAAAACACGCATCGCTCAGGATTT
CTCAAGCGGAGAAATATCGCGATGAGGTTTTCCTCATTGCTCAGGTCAGA
AAACTACCCCACGGGTTTGGGATAATCTATCGCGCAGTAGCCGTCAGTTT
TCTGTGTAATATCCTCTTTGAATCCCTCCGTACTGCGACACGTACTGGTA
GTGCTTTCGACACCGGAACGAAAAATTAATACCAGCAAGCGTGATAACTT
TGTTTGTGACCTGACAGACTCGTACTGCGAGAGCACTGCTTCTATGCATG
CACACCCCTCCTCTAAGCGCGACTGCAATGGCTCGATCAAACGCTCTTTC
TTCAGTATATGTCTCGCGAGTATCATTGAGCGCACAACAGCTTTTTGGCC
CCTTCTCCCCTGCCCTACATGTGACAGGTTCACTACACTCCGACGGATGT
GATGCACCGTCGGATACTTCATACTATATATCGTCGAATGACTGGAGAAA
AACGGGTGTGCCCAGACGAGGGCCCCCACTGGGATACTGTAGGCTTCCAG
GGAAGCGACCCTCGCACAGATTTGAATCGGTCAATGGGAATATTTTCACT
TATTCAGGTGGGAACACTTCAAACCGCTTGCACTATGGTCCGTAGCGACT
GTGTGATTGATGCTGTTACCTGACCTTTCATAAGAAAACTGTTACGGTGC
TGTCCAAGGACAAATGCGGAGTGCTGTCCAAGGGAAATGATTGGCTGAAC
ATGAGGCAACTATGTACAGATATGGCACCAAATAACACGGGACCATACGT
TGCAACGGGTAGTTGCAGGCCAAGTTGATACATGCAATGCATGCAGCGGT
AGCGCGGTCAGCCTAGAAGAAACACCGTGAATAACGGCGATACATACTTT
GGGGTGCAGGTGTTGTTTTTGCTGGAAACGCAGCCAGCGTTCGCGGCGAA
GCTCTACCGAATATCTACGGACGATGTCACCGGTTGGCCATTTCTATGTG
TAAGCATCGGATTCACCAAGGTGGGTATAGGGGTGCGGACTTAATTTCTG
ACAAAGGCGCAGTCCTTTGCCGGCGCCGCGATACTTGTTTGTCCGACGCC
AAAAAAAATATTTGGGGACGGGATTGGGGGTGTAAAAACGTCGCTGCTCG
AGCTGGCGCAAGTGCGATATACATTTTTAACAAATAACATGGACACCATC
TAGTTTACGTCTCACGAACAACACGGTAGTTGTGTCACCGAATATCCAGT
CCATATTGGTGGTTCAGAAGGACCCAGAGCACTGGGTAGGAAGTCTTGTT
TCGATACAAAGAACAGTTTAAGGGAGAACAAGAGGGCAGAGCGTTTGATA
CCTAGGGGGGAAAAGCTTACGAGAAACGTGCAGTTCTCTGTGTGAAGGAA
AACGATTTATCTGCATTCGTTGAACCATCGTAACAAAAACAACGCCTGAT
TTTCACGGTTCACACCACCCCGTTGTTGTAACAACATCCTCCTTGGCGTA
GCCTTTCGAACAAGAAATCTGATTAAACCCGCTGTGGAGCCTCAGTTCCG
AGGTTCGACTCTCACCACAATGTTTCTTGACCTCTTTATTTCATGAGAAA
AAAATACGTAGCTAAACATATGAAAGTCATGGCATACATACACACTCCGA
CCAGAAGAAGCACCCTGCTTGTCCGAAATTCATGGCAAGAATAGCGCTGA
CGACAGGGGCGGCAACCCTGAAGTGAACCTCTGGGTTCAACGGCTTAAAA
AATCTGAAAGGTCACGGAATATATTTTTTATTTTTATGTTTTACACCTTA
ACAATAAATATAATCTGACCATCTATCTCTGAAGGAAGCATTTTTTCACC
CACCCCTTTATCGACAATATCCACTGTTTACCCGTTCCCCTCTGCCTAGA
ACGATGTGAAATTGACACATAGCTATGCTTTGGGAATGGCATGGTCAATG
ATCTAACAACGACAGCATGCAAAACATATGTACCCCCCCCGCTCCCGCGC
CTCTGCGGCTACTACTTACTATATCGTTGAATGGCCGTGCAGGAGGCAGT
GGGAGCTCTCCGGCGGGGCGACTGCTACGCGGAGTGTAATCAACAGGACT
CGGTAATGAAAGTGGTCCACGAGCTTCATCAAGCGCAATATCACGCCTTC
CTGGTGCTCTGTCGCACTAAGCCAGCCACTCACCACGCCGTACACCTCTC
CAAGGTGATGAGAGGACGTCGATTGCTCATCTCGTAA

Coding sequence (CDS) from alignment at H-paniculata_contig5713:8773..13409+

>mRNA_H-paniculata_contig5713.13265.1 ID=mRNA_H-paniculata_contig5713.13265.1|Name=mRNA_H-paniculata_contig5713.13265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2868bp|location=Sequence derived from alignment at H-paniculata_contig5713:8773..13409+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAACGCATTCGGCATTGCTTACCGACCGCAAGGGTTGGTCTCACCAAC
AACCACCCAAGAATACGATCTACCTTCGGGACAGGCCTTTGTCGATGAGG
ACGAGTTCGAGGCGGAATTGAGCATGGAGTTTAGAGTAGCAATGTCAGGA
AGAATCGTTTCACCCCAGACTTGTTTGATGCCAGCTTTTGAAGGAGGCCA
ACAAGTACAAGAGGTTAACGTTGGGGTGCGCAAGCATGATCAAGATGAAG
AGGGCATAGACGAAAACGCATTCGGCATTGCTTACCGACCGCAAGGGTTG
GTCTCACCAACAACCACCCAAGAATACGATCTACCTTCGGGACAGGCCTT
TGTCGATGAGGACGAGTTCGAGGCGGAATTGAGCATGGAGTTTAGAGTAG
CAATGTCAGGAAGAATCGTTTCACCCCAGACTTGTTTGATGCCAGCTTTT
GAAGGAGGCCAACAAGTACAAGAGGTTAACGTTGGGGTGCGCAAGCATGA
TCAAGATGAAGAGGGCATAGACTCACAACCAGATAGGGAGTCCGCAGCAA
TCGAAAACTTTGACATTCGAAAGGAAGGGTCAACAGCGCTCGAGTTAGTT
GCAGAGGTATACCAAGCTGAAGGATCCGCTACGAAGGTGTGTGTGTTCAC
AACCAGATAGGGAGTCCGCAGCAATCGAAAACTTTGACATTCGAAAGGAA
GGGTCAACAGCGCTCGAGTTAGTTGCAGAGGTATACCAAGCTGAAGGATC
CGCTACGAAGGTGTGTGTGTGTGATACCCCACAAGTAGGCAGCACATTCG
TTGCCATCGGGCGGCATCCAACCGCTGTCAACACAACGAAACTAAAAACG
ATTGGAGGATACTCTGACGATGGCGAGGTGATCAAATTCTGCGCGATACA
AGAGGAGGACGAAGAAGCACTATCTGATCATGCAGCCGATGGAATGGACA
GTAAAACACAGGGCGAAGAAGGCGCGATCGTGTCGCACATGCAGCGTCAA
CCGGAGCAACAGCAAGAGAAGAGGGGGGACGACCTCATAAGAGTAGCCCA
GGAATGGGATGCGATTGACCAGGTGATACCCCACAAGTAGGCAGCACATT
CGTTGCCATCGGGCGGCATCCAACCGCTGTCAACACAACGAAACTAAAAA
CGATTGGAGGATACTCTGACGATGGCGAGGTGATCAAATTCTGCGCGATA
CAAGAGGAGGACGAAGAAGCACTATCTGATCATGCAGCCGATGGAATGGA
CAGTAAAACACAGGGCGAAGAAGGCGCGATCGTGTCGCACATGCAGCGTC
AACCGGAGCAACAGCAAGAGAAGAGGGGGGACGACCTCATAAGAGTAGCC
CAGGAATGGGATGCGATTGACCAGCTGCGAACTGCGGAAAACTCGGTGCC
GATGGAAAGAGGGGTCGGTGGCGCGCTAAAGCCCCGCTTTGTCGACCAAA
AGGGTAAAATTGTCGCCACGTCTGAGGTCTTGGCGTATTTCCGTTCTCAG
CTGCGAACTGCGGAAAACTCGGTGCCGATGGAAAGAGGGGTCGGTGGCGC
GCTAAAGCCCCGCTTTGTCGACCAAAAGGGTAAAATTGTCGCCACGTCTG
AGGTCTTGGCGTATTTCCGTTCTCAGGATCTCAGCGCGTACAAGTCCTCA
ATTGTCTCTGTAGAACCCCGTCAGCAACCATGGAACTTGTTTCGAAAACA
CGCATCGCTCAGGATTTCTCAAGCGGAGAAATATCGCGATGAGGTTTTCC
TCATTGCTCAGGATCTCAGCGCGTACAAGTCCTCAATTGTCTCTGTAGAA
CCCCGTCAGCAACCATGGAACTTGTTTCGAAAACACGCATCGCTCAGGAT
TTCTCAAGCGGAGAAATATCGCGATGAGGTTTTCCTCATTGCTCAGGTTC
ACTACACTCCGACGGATGTGATGCACCGTCGGATACTTCATACTATATAT
CGTCGAATGACTGGAGAAAAACGGGTGTGCCCAGACGAGGGCCCCCACTG
GGATACTGTAGGCTTCCAGGGAAGCGACCCTCGCACAGATTTGAATCGGT
CAATGGGAATATTTTCACTTATTCAGGTTCACTACACTCCGACGGATGTG
ATGCACCGTCGGATACTTCATACTATATATCGTCGAATGACTGGAGAAAA
ACGGGTGTGCCCAGACGAGGGCCCCCACTGGGATACTGTAGGCTTCCAGG
GAAGCGACCCTCGCACAGATTTGAATCGGTCAATGGGAATATTTTCACTT
ATTCAGGTGTTGTTTTTGCTGGAAACGCAGCCAGCGTTCGCGGCGAAGCT
CTACCGAATATCTACGGACGATGTCACCGGTTGGCCATTTCTATGTGTAA
GCATCGGATTCACCAAGGTGTTGTTTTTGCTGGAAACGCAGCCAGCGTTC
GCGGCGAAGCTCTACCGAATATCTACGGACGATGTCACCGGTTGGCCATT
TCTATGTGTAAGCATCGGATTCACCAAGGAGGCAGTGGGAGCTCTCCGGC
GGGGCGACTGCTACGCGGAGTGTAATCAACAGGACTCGGTAATGAAAGTG
GTCCACGAGCTTCATCAAGCGCAATATCACGCCTTCCTGGTGCTCTGTCG
CACTAAGCCAGCCACTCACCACGCCGTACACCTCTCCAAGGTGATGAGAG
GACGTCGATTGCTCATCTCGTAAGAGGCAGTGGGAGCTCTCCGGCGGGGC
GACTGCTACGCGGAGTGTAATCAACAGGACTCGGTAATGAAAGTGGTCCA
CGAGCTTCATCAAGCGCAATATCACGCCTTCCTGGTGCTCTGTCGCACTA
AGCCAGCCACTCACCACGCCGTACACCTCTCCAAGGTGATGAGAGGACGT
CGATTGCTCATCTCGTAA