mRNA_H-paniculata_contig5707.13256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5707.13256.1
Unique NamemRNA_H-paniculata_contig5707.13256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: D8LRP5_ECTSI (Cilia- and flagella-associated protein 300 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP5_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 2.980e-87
Identity = 152/297 (51.18%), Postives = 192/297 (64.65%), Query Frame = 1
Query:  418 ARTYFSFKSVGEASCLSKD-KGLKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQNKAQRNASIESVQWETLSCTATSMDFFDCLFQSGIVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGGAICQPDERLEAYTQATKVLYKDLVSVRKNTASGSVEISPCKVYRVTGI------NGHDQRNQDQSNSIANSE-----------------RHLFLNAK----DPESSYHVCLLVVDLGMKRASVLRKEFVPFW 1224
            AR ++ FK   E+     D K +KESL QWGM +  ++TQ +F P FM HEE++F+RQLL F  +   P        S+ESVQWE L CTA SMDFF+CL   GIVS++GN+RGC+ +VFDGVTVSDKLRELLVNP+SEN +  FSP QQ ELLFHVF+ L VGG +CQPD+ LE YT+A K LYKDLVSV+KN ++G +EI+  KVYRVT        NG+D    +  ++I++SE                    F   K    +  S +  CL+VVDL  KRASVLRKEF+PFW
Sbjct:   15 ARVHYDFKMTRESGDPFFDQKEIKESLRQWGMEDTLTLTQVQFCPTFMVHEETTFLRQLLTFIVD--NPTKPRGTKTSVESVQWERLKCTAMSMDFFNCLIDKGIVSKTGNMRGCFPDVFDGVTVSDKLRELLVNPDSENAD-AFSPAQQEELLFHVFRVLAVGGGVCQPDDSLEPYTKAAKALYKDLVSVQKNASTGKLEIAASKVYRVTEASTANNHNGNDASKNNPESAISSSEGSNGAVVGSDXXXXXXGMSSFWKGKCAPSESSSPHSTCLVVVDLAKKRASVLRKEFLPFW 308          
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: A0A6H5JLX0_9PHAE (Cilia- and flagella-associated protein 300 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLX0_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 2.650e-78
Identity = 147/316 (46.52%), Postives = 186/316 (58.86%), Query Frame = 1
Query:  418 ARTYFSFKSVGEAS-CLSKDKGLKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQNKAQR----NASIESVQWETLSCTATSMDFFDCLFQSG------------IVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGGAICQPDERLEAYTQATKVLYKDLVSVRKNTASGSVEISPCKVYRVTGI------NGHDQRNQDQSNSIANSERHLFL------------------------NAKDPESSYHVCLLVVDLGMKRASVLRKEFVPFW 1224
            AR ++ F+   E+       K +KE+L QWG+ +  ++TQ +F P FM HEE++F+RQLL F  +                S+ESVQWE L CTA SMDFF+CL   G            IVS+SGNIRGC+ +VFDGVTVSDKLRELLVNP+SEN +  FSP QQ ELLFHVF+ L VGG +CQPD+ LE YT+A K LYKDLVSV KN ++G +EI+  KVYRVT        N +D R  +   +I++SE                             N+  P S+   CL+VVDL  KRASVL  EF+PFW
Sbjct:   15 ARVHYDFRLTRESGDSFFGQKDIKENLRQWGIEDTLTLTQVQFCPTFMVHEETTFLRQLLTFIVDNPAKPRMEHMMRSTKTSVESVQWERLKCTAMSMDFFNCLIDKGDKEEESKYQGERIVSKSGNIRGCFPDVFDGVTVSDKLRELLVNPDSENAD-AFSPAQQEELLFHVFRVLAVGGGVCQPDDSLEPYTKAAKALYKDLVSVHKNASTGKLEIAASKVYRVTEASTVTNHNDNDARKTNPEGAISSSEGXXXXXXXXXXXXXXXXXXXXXXXXCAPSNSSSPHST---CLVVVDLAKKRASVLWNEFLPFW 326          
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: A0A8K1FJ99_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJ99_PYTOL)

HSP 1 Score: 138 bits (347), Expect = 2.770e-34
Identity = 87/266 (32.71%), Postives = 135/266 (50.75%), Query Frame = 1
Query:  433 SFKSVGEASCLSKDKGLKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQN-KAQRNA-SIESVQWETLSCTATSMDFFDCLFQSGIVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGGAICQPDERLEAYTQATKVLYKDLVSVRKNTASGSVEISPCKVYRVTGINGHDQRNQDQSNSIANSERHLFLNAKDPESSYHVCLLVVDLGMKRASVLRKEFVPFW 1224
            SF+ + +   L +    K+ LLQW +  +  + +   +       E   ++   AF+ +     + K  R   +I  +    L CT TS+ FFD L  +G+V+ SG++R C DEV+DG T  D ++E L+NP+SEN + VFS ++Q E +F +F+AL +GG++CQ D+ +  Y   TK  YK LVSV+KNTA  +       VY V          +D +         LF +     S +H C +V D   +  +V R  F PFW
Sbjct:   19 SFEYIEKGFPLLQSTDAKQKLLQWNLDRSLQIFRFCVNKKITKETEEETIQ---AFFRDPNVQSHLKLPRQLDNIRDLHCRRLRCTITSLSFFDKLVDAGLVASSGSLRRCMDEVYDGATAGDLVKEALINPDSENAD-VFSEEEQNEFIFQIFRALVLGGSMCQSDDNIAPYESMTKQFYKSLVSVKKNTADPTAIDITSHVYVV----------EDDA---------LFASP----SPFHTCFVVFDPKKRWLTVWRHAFEPFW 257          
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: A0A6G0X974_9STRA (Cilia- and flagella-associated protein 300 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X974_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.020e-33
Identity = 98/256 (38.28%), Postives = 139/256 (54.30%), Query Frame = 1
Query:  481 LKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQNKAQ------RNASIESVQWETLSCTATSMDFFDCLFQSG-IVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGGAICQPDERLEAYTQATKVLYKDLVSVRKNTASGSVEI-SPCKVYRVTGINGHDQRNQDQSNSIANSERHLFLNAKDPESSYHVCLLVVDLGMKRASVLRKEFVPFW 1224
            +K   LQW + ++  V + R    F P +E+SF+R   AF+   E+P+ +A+         SIES+ +  L  +  SM FF+ L  +  IVS+SG IR CYD+V++  TVSD LR+++VNP+SE+ +L FS  +Q E +F +FK L +GGA+ QPD+ LE Y   TK +YK LVSVRK   S ++++ SP  VY  T     D  NQ Q           F     P   ++ C L VD            FVPFW
Sbjct:   27 MKLKFLQWNLDQHGRVKRFRVRGKFDPADETSFLR---AFF---ESPEVRAELPFPSSMPPSIESMSFRKLKTSVLSMAFFEKLEDNPQIVSKSGYIRKCYDDVYNDCTVSDCLRDMVVNPDSEHASL-FSSAEQDEAVFQIFKRLVIGGAMSQPDDNLEPYLSMTKQVYKALVSVRKEADSKALQVYSP--VYIFTD---DDSSNQPQ-----------FFPTSSP---FNACFLAVDPKKHAVLCWYAPFVPFW 256          
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: A0A1V9Y765_9STRA (Cilia- and flagella-associated protein 300 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y765_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.380e-32
Identity = 86/255 (33.73%), Postives = 140/255 (54.90%), Query Frame = 1
Query:  481 LKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQNKAQRN------ASIESVQWETLSCTATSMDFFDCLF-QSGIVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGGAICQPDERLEAYTQATKVLYKDLVSVRKNTASGSVEISPCKVYRVTGINGHDQRNQDQSNSIANSERHLFLNAKDPESSYHVCLLVVDLGMKRASVLRKEFVPFW 1224
            +K  L+QW + ++  V + R S  F P++E +F+R         E+P  +A  +      +S++ ++++ L  + TS+ FFD L  +S +VS  G +R C DEV+D  TVS+ LRE++ NPESE  +L F+PD+Q+EL++ +FK L +GGA+CQPD++LE Y + TK +YK L +VRK   +      P +VY    +               N++ +     KD  S ++  ++ VD   +        FVPFW
Sbjct:   21 VKLKLMQWNLDQHSVVKRFRISCRFDPNDEITFLRSFF------ESPVVRAHISLPSTLGSSLDMLEFQRLRTSITSLSFFDKLENESDLVSTGGYLRKCMDEVYDHCTVSECLREMMANPESEYCHL-FTPDEQKELIYQIFKRLVIGGAMCQPDDKLEPYLEITKRIYKALAAVRKLPDAQP----PLEVYSYAYL------------LTCNAKGNFGFFPKD--SPFNSLIVAVDPKKQSVQCWYCPFVPFW 250          
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: A0A485KJB2_9STRA (Cilia- and flagella-associated protein 300 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJB2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.050e-31
Identity = 89/258 (34.50%), Postives = 134/258 (51.94%), Query Frame = 1
Query:  481 LKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQNKAQRNA---------SIESVQWETLSCTATSMDFFDCLFQSG-IVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGGAICQPDERLEAYTQATKVLYKDLVSVRKNTASGSVEISPCKVYRVTGINGHDQRNQDQSNSIANSERHLFLNAKDPESSYHVCLLVVDLGMKRASVLRKEFVPFW 1224
            +K  L+QW + ++  V + R    F P ++++F+R   AF+      ++KA R A         S++++ +  L  +  +M FFD L Q G IVS+ G +R C D+V+D  TV+D LR++LVNP+S++ +L FSP +Q E +F +FK L +GGA+CQPD+ L  Y   TK +YK LVSVRK     + E    KVY    +   D       +        LF       S ++ C + VD            FVPFW
Sbjct:   32 VKLKLMQWNLDQHGGVKRFRVQGRFDPADDAAFLR---AFF------ESKAVRAALPFPATMPGSLDTLPFSRLKTSVVNMSFFDKLEQCGDIVSKGGYLRKCLDDVYDDCTVNDCLRDMLVNPDSDHADL-FSPHEQNEGIFQIFKRLVIGGAMCQPDDMLSEYLAMTKRIYKGLVSVRK-----AHETHDVKVYSPLYLVHDDDDCMSNQSEREGGAVPLFRK----RSRFNACFVAVDPKKHAVICWYAPFVPFW 270          
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: G4YWF9_PHYSP (Cilia- and flagella-associated protein 300 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YWF9_PHYSP)

HSP 1 Score: 130 bits (326), Expect = 3.910e-31
Identity = 92/272 (33.82%), Postives = 145/272 (53.31%), Query Frame = 1
Query:  436 FKSVGEASCLSKDKGLKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQN----KAQRNASIESVQWETLSCTATSMDFFDCLFQSGIVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGG-AICQPDERLEAYTQATKVLYKDLVSVRKNTASGS----VEISPCKVYRVTGINGHDQRNQDQSNSIANSERHLFLNAKDPESSYHVCLLVVDLGMKRASVLRKEFVPFW 1224
            F+ + +A    +D  +++ LLQW +S++  + + R     +P+E       LL  +F+ E+       ++       S+++E L  + TSM FF+ L  +GIVS+ G+IRGC DE FDG T  D L E+L NP+S+N + VFS D++ E +F +F AL VGG A+ Q D R+EAY  AT+ LY+ L+SV+K+ A  +    +EI+  +VYRV+G                     LF   + P S +H C  ++D   +  +V    F   W
Sbjct:   27 FEHLPDALPALRDFEIRQKLLQWNLSDSLQLQRFRVHRR-LPNEADEA---LLTEFFQDESVHRILLVRSPPPLLNSSLRFERLRVSVTSMAFFEKLNAAGIVSRDGSIRGCIDEDFDGCTAGDLLTEMLANPDSDNCD-VFSDDERLEFIFQLFSALVVGGGALRQADSRVEAYEDATRTLYRALISVKKSIADANRKRDIEITS-RVYRVSGDA-------------------LF---QAPSSRFHSCFAIIDARKRWLTVWYCPFRASW 270          
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: A0A067CJ50_SAPPC (Cilia- and flagella-associated protein 300 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ50_SAPPC)

HSP 1 Score: 128 bits (322), Expect = 9.860e-31
Identity = 83/249 (33.33%), Postives = 132/249 (53.01%), Query Frame = 1
Query:  481 LKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQNKAQRNASIESVQWETLSCTATSMDFFDCLF-QSGIVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGGAICQPDERLEAYTQATKVLYKDLVSVRKNTASGSVEISPCKVYRVTGINGHDQRNQDQSNSIANSERHLFLNAKDPESSYHVCLLVVDLGMKRASVLRKEFVPFW 1224
            +K  L+QW + E+  V + R S  F P+++++F+R        ++     A    +++ + +E L+ T TS+ FFD L  + G+VS  G +R C DEV++  TVSD +RE++ N +SE+ +L F+  +QREL+F +FK L +GGA+CQ DE L+ Y   TK +YK L +VRK    G    S   VY  T          D+S   + +   LF       S ++ C + +D   +        +VPFW
Sbjct:   26 VKVKLMQWNLDEHGRVGRFRPSCPFDPNDDAAFLRCFFESPVVRDHLTVPASTPTTLDGLSFERLATTVTSLAFFDKLADEPGLVSSGGYLRKCLDEVYEHCTVSDSVREMMANCDSEHAHL-FTAAEQRELIFQIFKRLVIGGAMCQSDETLQPYLDVTKAIYKALAAVRKGPQGGVHVYS--HVYLFT----------DESTRKSGT---LF----QKPSPFNACFVAIDPKKQAVQCWYVPYVPFW 254          
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: K3WZF8_GLOUD (Cilia- and flagella-associated protein 300 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZF8_GLOUD)

HSP 1 Score: 127 bits (319), Expect = 5.500e-30
Identity = 88/276 (31.88%), Postives = 129/276 (46.74%), Query Frame = 1
Query:  436 FKSVGEASCLSKDKGLKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQNKAQRNASI-----ESVQWETLSCTATSMDFFDCLFQSGIVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESE--------NTNLVFSPDQQRELLFHVFKALCVGGAICQPDERLEAYTQATKVLYKDLVSVRKNTASGSVEISPCKVYRVTGINGHDQRNQDQSNSIANSERHLFLNAKDPESSYHVCLLVVDLGMKRASVLRKEFVPFW 1224
            F+ + +   + KD  +K  LLQW ++E   + + R      P  E   V Q       Q T       ++S      + +Q   L  TATS+ FFD L  +G+VS SG +R C DEV+DG T SD L+E  V+ E+E        N N       Q+E +F +F+AL +GGA+CQ DE ++ Y +   VLYK LVSV+K+ +   V     +VY V      D R    S  +A                +  C +++D   +  +V R  F PFW
Sbjct:   31 FELIPDGVPVLKDSEVKHKLLQWNLNETLQLQRFRVKAKITPDVEEELVTQFFHNAHVQSTLSLPEALSSSAFKDAPQRIQCRKLRATATSLSFFDRLVPAGLVSGSGALRRCLDEVYDGATASDLLKEAFVSAEAEENLLEGSNNANWFSLEQDQQEFIFQLFRALVIGGAMCQSDESVQPYERMVSVLYKALVSVKKHASDSLVIDVTSRVYAV-----EDTRVLPAS-CVAR---------------FSTCFVILDPRKRWLTVWRHPFQPFW 285          
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Match: A0A1V9Z4A1_9STRA (Cilia- and flagella-associated protein 300 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4A1_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.540e-29
Identity = 91/256 (35.55%), Postives = 134/256 (52.34%), Query Frame = 1
Query:  481 LKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQNKAQ------RNASIESVQWETLSCTATSMDFFDCLF-QSGIVSQSGNIRGCYDEVFDGVTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGGAICQPDERLEAYTQATKVLYKDLVSVRKNTASGSVEISPCKVYRVTGINGHDQRNQDQSNSIANSERHLFLNAKDPESS-YHVCLLVVDLGMKRASVLRKEFVPFW 1224
            +K  L+QW + E+ +V + R S  F   +E++F+R    F+   E+P  +A          S++ + +E L    TSM FFD L  +  +VS  G +R C DEV+D  TVSD +RE+LVNP+S++ + VFS   Q EL+F +FK L  GGA+CQ DE L  Y   TK +YK L +VRK  A   +E+    VY VT  N              ++   LF     P++S ++ C + VD   +        +VPFW
Sbjct:   26 VKLKLMQWNLDEHGAVRRFRLSCKFDVADEAAFLR---CFF---ESPNVRAHVPLPPTAPTSLDRLVFERLRTNVTSMSFFDKLENEPDLVSNGGYLRKCIDEVYDHCTVSDTVREMLVNPDSDHAD-VFSKADQAELIFQIFKRLATGGAMCQSDETLAPYLDTTKRIYKALAAVRK--APHGLEVYSY-VYLVTAPN-------------KSTNAGLF-----PKTSPFNACFVAVDPKKQAVQCWYAPYVPFW 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5707.13256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRP5_ECTSI2.980e-8751.18Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A6H5JLX0_9PHAE2.650e-7846.52Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A8K1FJ99_PYTOL2.770e-3432.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0X974_9STRA1.020e-3338.28Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A1V9Y765_9STRA2.380e-3233.73Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A485KJB2_9STRA1.050e-3134.50Cilia- and flagella-associated protein 300 n=1 Tax... [more]
G4YWF9_PHYSP3.910e-3133.82Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A067CJ50_SAPPC9.860e-3133.33Cilia- and flagella-associated protein 300 n=2 Tax... [more]
K3WZF8_GLOUD5.500e-3031.88Cilia- and flagella-associated protein 300 n=1 Tax... [more]
A0A1V9Z4A1_9STRA3.540e-2935.55Cilia- and flagella-associated protein 300 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5707contigH-paniculata_contig5707:6093..10865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score281.2
Seed ortholog evalue5.7e-73
Seed eggNOG ortholog2880.D8LRP5
Preferred nameC11orf70
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0040012,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060295,GO:0060296,GO:0060632,GO:0065003,GO:0065007,GO:0065008,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120030,GO:0120031,GO:0120036,GO:1902019,GO:2000145
EggNOG free text desc.Domain of unknown function (DUF4498)
EggNOG OGs28MX2@1,2QUFH@2759
Ec32 ortholog descriptionProtein of unknown function DUF4498
Ec32 orthologEc-12_000570.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1323
Cds size897
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930612.3702807-UTR-H-paniculata_contig5707:6092..61881622930612.3702807-UTR-H-paniculata_contig5707:6092..6188Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5707 6093..6188 -
1691481372.2153645-UTR-H-paniculata_contig5707:6092..61881691481372.2153645-UTR-H-paniculata_contig5707:6092..6188Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5707 6093..6188 -
1622930612.4717548-UTR-H-paniculata_contig5707:10535..108651622930612.4717548-UTR-H-paniculata_contig5707:10535..10865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5707 10536..10865 -
1691481372.302722-UTR-H-paniculata_contig5707:10535..108651691481372.302722-UTR-H-paniculata_contig5707:10535..10865Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5707 10536..10865 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930612.386627-CDS-H-paniculata_contig5707:6188..64431622930612.386627-CDS-H-paniculata_contig5707:6188..6443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 6189..6443 -
1691481372.2415738-CDS-H-paniculata_contig5707:6188..64431691481372.2415738-CDS-H-paniculata_contig5707:6188..6443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 6189..6443 -
1622930612.4020648-CDS-H-paniculata_contig5707:7052..73001622930612.4020648-CDS-H-paniculata_contig5707:7052..7300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 7053..7300 -
1691481372.2608502-CDS-H-paniculata_contig5707:7052..73001691481372.2608502-CDS-H-paniculata_contig5707:7052..7300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 7053..7300 -
1622930612.4174657-CDS-H-paniculata_contig5707:8876..89701622930612.4174657-CDS-H-paniculata_contig5707:8876..8970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 8877..8970 -
1691481372.273438-CDS-H-paniculata_contig5707:8876..89701691481372.273438-CDS-H-paniculata_contig5707:8876..8970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 8877..8970 -
1622930612.4331996-CDS-H-paniculata_contig5707:9691..98181622930612.4331996-CDS-H-paniculata_contig5707:9691..9818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 9692..9818 -
1691481372.2828038-CDS-H-paniculata_contig5707:9691..98181691481372.2828038-CDS-H-paniculata_contig5707:9691..9818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 9692..9818 -
1622930612.4510574-CDS-H-paniculata_contig5707:10362..105351622930612.4510574-CDS-H-paniculata_contig5707:10362..10535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 10363..10535 -
1691481372.2924197-CDS-H-paniculata_contig5707:10362..105351691481372.2924197-CDS-H-paniculata_contig5707:10362..10535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5707 10363..10535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5707.13256.1prot_H-paniculata_contig5707.13256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5707 6189..10535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5707.13256.1

>prot_H-paniculata_contig5707.13256.1 ID=prot_H-paniculata_contig5707.13256.1|Name=mRNA_H-paniculata_contig5707.13256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=299bp
MEVELRAGGAGGNVVKDLALTQEGGSEAVARTYFSFKSVGEASCLSKDKG
LKESLLQWGMSENFSVTQARFSPGFMPHEESSFVRQLLAFYFEQETPQNK
AQRNASIESVQWETLSCTATSMDFFDCLFQSGIVSQSGNIRGCYDEVFDG
VTVSDKLRELLVNPESENTNLVFSPDQQRELLFHVFKALCVGGAICQPDE
RLEAYTQATKVLYKDLVSVRKNTASGSVEISPCKVYRVTGINGHDQRNQD
QSNSIANSERHLFLNAKDPESSYHVCLLVVDLGMKRASVLRKEFVPFW*
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mRNA from alignment at H-paniculata_contig5707:6093..10865-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5707.13256.1 ID=mRNA_H-paniculata_contig5707.13256.1|Name=mRNA_H-paniculata_contig5707.13256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4773bp|location=Sequence derived from alignment at H-paniculata_contig5707:6093..10865- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATTTCACCGACGCCGCAAAATTATTGCAAGGCTGTGTTACGAGCTGCA AGAGCGATTGCAGGGTATGTGCATAGCACGTTGATATACATACAAGTGGA TACGGGACGAGTGTTCGACCGCCGCATTTCTCGAGAGAAGCTTCGTGCAG GAGTCCGTCTGGAGGTTGTTGGTGTGTGTAATGCCCTAACACAAACTGGT GGGCTGAGTGTTTTTGTGCTATTCCTCGTGGCCAACCGAAACTGTTCTAC GATTGAGAGCTTGACTCCCCTCAAGCAAAAGATATCTATGATCGTGTTTC TGCTCTTGGTAAATATTCCGCAACAGAGATATGGAAGTCGAACTCCGAGC AGGCGGCGCCGGCGGTAATGTCGTGAAGGATTTAGCACTAACCCAAGAAG GAGGAAGCGAGGCTGTGGCGCGAACCTATTTTTCCTTCAAGTCGGTGGGG GAGGCCTCGTGTTTGAGCAAGGACAAGGGACTCAAGGAAAGCCTACTTCA GTGGTCAGTCCACTACTGACTCTGACTGACTGTACAGAGTAAAGTTTGTA TTTACAGTAGTCCGTATACAGGCCCATCATCCAAGTCACTATTTTCCACC CCAGAGTGTACACCCTCTGTATGCACCACTCGGAAGCGTTGTGAGGGAAG GAGCTTAAGCCCACGGCAAGATAACAAGTACCAAGCCCCGATTTCCGATC CCCGCAAAACATGGGTCCAAGTCACTATTATAGTGCTGTAGAGTTTTATC TATCAATATGTCAGGAGAGAAAGCATAGTATCACCCTCCTTCATCTGAGC ACCGATTTGTGTGTGCGGCTATATTTTAACATGTCGTTCTCCTCCTATGC ACCCCGTCTAAACAGTAGAGCCTTCCTGTCCACATGTCAGGAACAGGGAG AAGAGCTTCTTTTTCTTGTTGAGCCTTGGTTGAGCAGCCATCTTCACCCT CCTTCATCCAACTCACTTTTTTTGTGTGTGGATATATTCGATGTTATCTA CTCCTCCTGCGTATTATATGTCTTCCGGTTCGATTTCGCACAAAAAGGGG TATGTCGGAAAATTTCTCGGTGACACAGGCGCGGTTCAGTCCTGGTTTCA TGCCTCATGAAGAGAGCAGCTTCGTTCGACAGCTTCTGGCCTTCTACTTT GAGCAAGAAACACCGCAAAACAAGGTAGGCGCGGAGAATAGAGACGGTGT AAAGGAATACCTGCACCACCTATATATTACACACCCTCTCTATCTACTGC ATCCAACCGCTGTTGGAGGAAAAGGAATAACTTGTAGTCGCCCCCTTATA TAGGATTGTATTGACATATCGTAGAACAGACGCTATGGTATCCGGAATAG ACGCCGTGATATCTGGAAATGGCACCGTGTTGCGTGTATTTTTTTATATA TATATTGATAAAATACGACGAAGATGGTCTAGTTGACGTCTGACAAATCA GAACGGCTAAATAATTAAACCTTAACCATTGTCTACCCGATCAGTAGTAC AAAACAAGTCTGGCTTTACCAGCGTTAAGTGGATGGCGTTCGTTTTGTTT TTTTCTTGCACCTCCGGCAAACTACCTTGCAGAAGTATGGCACTCGGTAG TCGGACCATGCTGTACCTGCTATATGCTAGGGAGAGTTCACTATTTAAGA TATAGTAATGGCAGTCAGAATATATATATATATATAAAGAAACCAAAATA ACACCATTCGGTTAATGCCTGATAAGTAAGACCATTAGAATTGCCAGTTA ACCTTCAAGTATATATATATGTTTTTTCCTTAGCATTCCGGAACTGTCCG ACCCACTGGTTTTGAGGCTTGAAGCTGCCGCTCCCACTCCGCTCAAAAGT ACCACGTTATGGACACTCTGGTCGCTAACTCGTCGCTTCTGATAGGCGCA AAGAAATGCCAGCATCGAGAGCGTGCAGTGGGAAACATTGAGCTGCACCG CCACCTCGATGGACTTCTTCGATTGCCTCTTCCAATCAGGTCGGTCAGGC AGGCTCGCGTCCATCCAACGTGACCCTGATTACCCTGAGCGAGCAAACCT GCCGTATTCTACTATTTAGAGCTGAACGCACATACTATATGCGGACGGGG GGGGAAGTTAGAGGCGCTACTCCCCCATACTGTAAGAAATATCGCACAAC ATGAACGGTAACATTCAGAACACTACGTGCATTTGTACTATTAGTTCCAC AGTCCCTGGATCGGGAAAAGAAAACAGGCGCAAAAAGAGAAGTAGGGTCT GCCTGAGGGCATTGCATTCATACCATACGAGAAACATTTATTAGCGCTCT TACTCCGGCGGATATGTGTCAAGTCCTGTTGGGAACTAGATGTTCGCGGC TGATCCCTCATCTGTCCGCTGATGAGAAATTCATTCCTGCCGATAAACAA ACAAAGAGGGAGGGGTGACGAGGAAACGATACCGTAGCATCGATTTGGAA AATACCTGTCGAAGCTACTTCTCGGGCAAATATCGAGGAAGATTGCTGGT CGTTCGCTGTGATTCATATACTATTACGCATCGCGTACTCTGGGATAGAT CACTTGTTGTACCTGATCGTATTGTTGGACAGGATATTCCAGACAAGCTT GCATAATCACCATTCGAGCTAAACCAAGCGGGTACGTGGAGCCTCCGAGA TTTTTTGTGCAGTTTCAGTGATTCACATGAAAAAGATTGGAGACAGTCAC TCACCGTACATCAGTAGACGTATGCGGACTTGCAACCTTTGCGAGAGAAA CTGCATCGTCTGAACCTCGCAAACACGAATGGGGTTTCAAAGTTAAGTTA CAACAATGCAAGTTTAGAACAATCGAGGTTATTGCACCTTCATGGCATGT AAAATACAAACGCCGGGACCGTACCGGACACGCGTGCGGACAGCCATAGG GTAAAACCTACCCCTCGGTCACTAACCTACTGCATCCACAGTAGCAACCC TTCTCTTCGGCAACATTGACTGGTCTAACAAAACGAAAGCGGGCCAGGAT CCAGATTCAAGAATCGTACCTCCTGCCAATGCCTTTTGGTCGAGTGTTTC CGAAAATTGCTGCGTCTTTTGTAAAACAAACGTGAAGATTAACACTGTGT TTTGAACAAAATTGTACACTACAAGGGGACCACACAGTCAGCCCATCGAT ATTTTTGAGCTGTCAGGTCAAATTCGGTGCTCGTGTGAAGTGCATATTTT CAGAAGCACTTCCCCCCGGAATCAAGTTTTCACATTCGTTTGCTGCCCTG ACCCGTCGGGCATCCTCGCATCAGTATGCATACTTCAGGGCTATCTTTGT TTTACATTCGCCATCTGTTTGGTATTGCTTCAGTAGAGTATCAGGTACTT GTCGGGTTCATAACTTCATGACTACTTGAATTCAATGTGCGGTATGCGGT GATCCCCCCTCCCCTCAGTTTCAATCCCCCACATACAACCATATTTTGCT TTCCCCTACCCCTTCGTCCTATTTTACGGGAGTTGTTATACTCCACTATT TTTCTTTGCTCTTGAAGAACCACTAAAATAGTAAAAAATACGTATACAAT TACGATAATCCGCAGGGATCGTAAGCCAGTCAGGCAACATCCGGGGCTGC TACGATGAGGTGTTTGACGGCGTAACCGTCTCAGACAAACTTCGAGAGCT TCTCGTCAACCCGGAGTCGGAAAACACCAACTTGGTTTTCTCGCCAGACC AGCAGCGCGAGTTGTTGTTCCATGTGTTCAAGGCTCTGTGCGTCGGTGGA GCCATTTGCCAACCGGATGAGCGGCTGGAGGCCTATACACAAGCGACCAA AGTCCTGTACAAGGTGAAAGATTATACATCTAAGCAATTCCAATTAAGGT TTGCCAGTCGGAGCAAAGAGAATAGCTCTCTTTTTTGGTAACTCGTGAAG TTGCCGAGCATGTAGCGCGCACGAGGAGGGGGGGAAGCTTTCGTAGCGGG ATAATTCAGTTATGAAAGCCTGGGAAAGTTGTACAACGAGGTTGGAGTTT AGGCAAAAACCTAAAATCCAAGGTAGGTTTAGCTGTTGATGTAAATGTAG TCTCAGTGACTTTATAAATTGGTGGATTGTCATTTTTCTTGACCTGGATA TTAGCATAGTGAGCGCTTAATGAATTAGGGTTGTTATTCACTTAGTTCGG GTAGGGGCGAAAGACCGGGAGGGTTTAACCGATCGGGTTGCCAACAGCGG CGCAGATCGTAGTCCAAACCCGAGTTATTATTGTTTAAACCCGTCGCGTC CGAACTGATTATCCCGGCACAGTCCAATTGTGCAGTAATTATTCCTCTGG TTCAGTACTGTGTGAGGCGAGACATCCCACGTACCATGCATAAGGTAGAC AGCACAGTCAGAGCTTTGCCTGACAAGACAACAACCACGTTCGCTCGATT CCACCGTACTTTATCTCCGCAGGATCTTGTCTCCGTGCGCAAGAACACCG CCTCAGGCAGCGTGGAGATATCTCCATGCAAAGTGTACAGGGTAACCGGG ATTAACGGACACGATCAGCGTAATCAGGACCAAAGCAACAGTATCGCTAA TTCTGAACGTCACTTGTTCCTGAACGCGAAGGATCCAGAGTCTTCGTACC ATGTATGCTTATTGGTGGTGGACCTTGGCATGAAACGGGCCTCCGTGCTG CGGAAGGAGTTCGTTCCATTTTGGTAGCCGACTCTTGTTGCCCTAGTTGC TGCATAGTGCGATCGTTTTCTGTTTTCATTCTCCTGCCAACAGCTGCGGG TGGTGTAAGGGAATCAATCAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5707:6093..10865-

>mRNA_H-paniculata_contig5707.13256.1 ID=mRNA_H-paniculata_contig5707.13256.1|Name=mRNA_H-paniculata_contig5707.13256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1794bp|location=Sequence derived from alignment at H-paniculata_contig5707:6093..10865- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGTCGAACTCCGAGCAGGCGGCGCCGGCGGTAATGTCGTGAAGGA
TTTAGCACTAACCCAAGAAGGAGGAAGCGAGGCTGTGGCGCGAACCTATT
TTTCCTTCAAGTCGGTGGGGGAGGCCTCGTGTTTGAGCAAGGACAAGGGA
CTCAAGGAAAGCCTACTTCAGTGATGGAAGTCGAACTCCGAGCAGGCGGC
GCCGGCGGTAATGTCGTGAAGGATTTAGCACTAACCCAAGAAGGAGGAAG
CGAGGCTGTGGCGCGAACCTATTTTTCCTTCAAGTCGGTGGGGGAGGCCT
CGTGTTTGAGCAAGGACAAGGGACTCAAGGAAAGCCTACTTCAGTGGGGT
ATGTCGGAAAATTTCTCGGTGACACAGGCGCGGTTCAGTCCTGGTTTCAT
GCCTCATGAAGAGAGCAGCTTCGTTCGACAGCTTCTGGCCTTCTACTTTG
AGCAAGAAACACCGCAAAACAAGGGGTATGTCGGAAAATTTCTCGGTGAC
ACAGGCGCGGTTCAGTCCTGGTTTCATGCCTCATGAAGAGAGCAGCTTCG
TTCGACAGCTTCTGGCCTTCTACTTTGAGCAAGAAACACCGCAAAACAAG
GCGCAAAGAAATGCCAGCATCGAGAGCGTGCAGTGGGAAACATTGAGCTG
CACCGCCACCTCGATGGACTTCTTCGATTGCCTCTTCCAATCAGGCGCAA
AGAAATGCCAGCATCGAGAGCGTGCAGTGGGAAACATTGAGCTGCACCGC
CACCTCGATGGACTTCTTCGATTGCCTCTTCCAATCAGGGATCGTAAGCC
AGTCAGGCAACATCCGGGGCTGCTACGATGAGGTGTTTGACGGCGTAACC
GTCTCAGACAAACTTCGAGAGCTTCTCGTCAACCCGGAGTCGGAAAACAC
CAACTTGGTTTTCTCGCCAGACCAGCAGCGCGAGTTGTTGTTCCATGTGT
TCAAGGCTCTGTGCGTCGGTGGAGCCATTTGCCAACCGGATGAGCGGCTG
GAGGCCTATACACAAGCGACCAAAGTCCTGTACAAGGGATCGTAAGCCAG
TCAGGCAACATCCGGGGCTGCTACGATGAGGTGTTTGACGGCGTAACCGT
CTCAGACAAACTTCGAGAGCTTCTCGTCAACCCGGAGTCGGAAAACACCA
ACTTGGTTTTCTCGCCAGACCAGCAGCGCGAGTTGTTGTTCCATGTGTTC
AAGGCTCTGTGCGTCGGTGGAGCCATTTGCCAACCGGATGAGCGGCTGGA
GGCCTATACACAAGCGACCAAAGTCCTGTACAAGGATCTTGTCTCCGTGC
GCAAGAACACCGCCTCAGGCAGCGTGGAGATATCTCCATGCAAAGTGTAC
AGGGTAACCGGGATTAACGGACACGATCAGCGTAATCAGGACCAAAGCAA
CAGTATCGCTAATTCTGAACGTCACTTGTTCCTGAACGCGAAGGATCCAG
AGTCTTCGTACCATGTATGCTTATTGGTGGTGGACCTTGGCATGAAACGG
GCCTCCGTGCTGCGGAAGGAGTTCGTTCCATTTTGGTAGGATCTTGTCTC
CGTGCGCAAGAACACCGCCTCAGGCAGCGTGGAGATATCTCCATGCAAAG
TGTACAGGGTAACCGGGATTAACGGACACGATCAGCGTAATCAGGACCAA
AGCAACAGTATCGCTAATTCTGAACGTCACTTGTTCCTGAACGCGAAGGA
TCCAGAGTCTTCGTACCATGTATGCTTATTGGTGGTGGACCTTGGCATGA
AACGGGCCTCCGTGCTGCGGAAGGAGTTCGTTCCATTTTGGTAG
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