mRNA_H-paniculata_contig57057.13255.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57057.13255.1
Unique NamemRNA_H-paniculata_contig57057.13255.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.010e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AARRAAGAVTHAVDRV+ GKNRNAFCAVRPPGHHAG +G
Sbjct: 1822 AARRAAGAVTHAVDRVLAGKNRNAFCAVRPPGHHAGANG 1860
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: D8LG61_ECTSI (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG61_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 6.070e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AARRAAGAVTHAVDRV+ GKNRNAFCAVRPPGHHAG +G
Sbjct:  198 AARRAAGAVTHAVDRVLAGKNRNAFCAVRPPGHHAGANG 236
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: A0A7S2EL93_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EL93_TRICV)

HSP 1 Score: 64.3 bits (155), Expect = 3.920e-12
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AARRAAGAV HAVD V+ G+NRNAFC VRPPGHHAG +G
Sbjct:   70 AARRAAGAVQHAVDCVLVGRNRNAFCVVRPPGHHAGVNG 108
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: A0A7S1YY16_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YY16_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.760e-12
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AARRAAGAV HAVDRV+ G+NRNAFC VRPPGHHAG +G
Sbjct:   22 AARRAAGAVQHAVDRVLVGRNRNAFCVVRPPGHHAGVNG 60
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: A0A7S4RBR2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBR2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.760e-12
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AARRAAGAV HAVDRV+ G+NRNAFC VRPPGHHAG +G
Sbjct: 1035 AARRAAGAVQHAVDRVLVGRNRNAFCVVRPPGHHAGVNG 1073
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: A0A835YI51_9STRA (Histone deacetylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI51_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.140e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AARRAAGAVT AVD VV+G+ RNAFCAVRPPGHHAGP+G
Sbjct:   26 AARRAAGAVTAAVDAVVSGRYRNAFCAVRPPGHHAGPNG 64
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: A0A7S4K701_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K701_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.540e-12
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AARRAAGAV HAVDRV+ G+NRNAFC VRPPGHHAG +G
Sbjct:   66 AARRAAGAVQHAVDRVLIGRNRNAFCVVRPPGHHAGVNG 104
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: A0A8J9SU04_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SU04_PHATR)

HSP 1 Score: 64.7 bits (156), Expect = 1.010e-11
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AA RAAG+V  AVD+V+ G+NRNAFCAVRPPGHHAGP+G
Sbjct:   14 AAMRAAGSVCQAVDQVIAGENRNAFCAVRPPGHHAGPTG 52
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: A0A482S2X6_9ARCH (Hist_deacetyl domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2X6_9ARCH)

HSP 1 Score: 64.7 bits (156), Expect = 3.370e-11
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AARRAAGAV  AVDRV+ G+NRNAFC VRPPGHHAG SG
Sbjct:  206 AARRAAGAVAFAVDRVLLGRNRNAFCVVRPPGHHAGYSG 244
[Close]
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Match: A0A6S8HTR1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8HTR1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.800e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG 117
            AARRAAGAV HAVD V+ G+NRNAFC VRPPGHHAG +G
Sbjct:  790 AARRAAGAVQHAVDCVLVGRNRNAFCVVRPPGHHAGVNG 828
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57057.13255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG60_ECTSI6.010e-1489.74Histone deactylase of possible bacterial origin wi... [more]
D8LG61_ECTSI6.070e-1489.74Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
A0A7S2EL93_TRICV3.920e-1279.49Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1YY16_9STRA4.760e-1282.05Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RBR2_9STRA4.760e-1282.05Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A835YI51_9STRA6.140e-1284.62Histone deacetylase domain-containing protein n=1 ... [more]
A0A7S4K701_9STRA6.540e-1282.05Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A8J9SU04_PHATR1.010e-1176.92Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A482S2X6_9ARCH3.370e-1182.05Hist_deacetyl domain-containing protein (Fragment)... [more]
A0A6S8HTR1_9STRA5.800e-1179.49Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57057contigH-paniculata_contig57057:256..372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog2880.D8LG60
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930612.3247364-CDS-H-paniculata_contig57057:255..3721622930612.3247364-CDS-H-paniculata_contig57057:255..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57057 256..372 -
1691481372.1915455-CDS-H-paniculata_contig57057:255..3721691481372.1915455-CDS-H-paniculata_contig57057:255..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57057 256..372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57057.13255.1prot_H-paniculata_contig57057.13255.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57057 256..372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57057.13255.1

>prot_H-paniculata_contig57057.13255.1 ID=prot_H-paniculata_contig57057.13255.1|Name=mRNA_H-paniculata_contig57057.13255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
AARRAAGAVTHAVDRVVTGKNRNAFCAVRPPGHHAGPSG
back to top

mRNA from alignment at H-paniculata_contig57057:256..372-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57057.13255.1 ID=mRNA_H-paniculata_contig57057.13255.1|Name=mRNA_H-paniculata_contig57057.13255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig57057:256..372- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGAGAAGAGCTGCGGGAGCTGTGACGCACGCCGTGGACAGGGTGGT
GACGGGAAAAAATCGAAATGCATTTTGTGCCGTGCGCCCTCCTGGTCACC
ACGCGGGGCCGAGCGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig57057:256..372-

>mRNA_H-paniculata_contig57057.13255.1 ID=mRNA_H-paniculata_contig57057.13255.1|Name=mRNA_H-paniculata_contig57057.13255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig57057:256..372- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCGAGAAGAGCTGCGGGAGCTGTGACGCACGCCGTGGACAGGGTGGT
GACGGGAAAAAATCGAAATGCATTTTGTGCCGTGCGCCCTCCTGGTCACC
ACGCGGGGCCGAGCGGAGCGGCGAGAAGAGCTGCGGGAGCTGTGACGCAC
GCCGTGGACAGGGTGGTGACGGGAAAAAATCGAAATGCATTTTGTGCCGT
GCGCCCTCCTGGTCACCACGCGGGGCCGAGCGGA
back to top