mRNA_H-paniculata_contig57054.13254.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE) HSP 1 Score: 109 bits (272), Expect = 3.910e-26 Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query: 16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
F R QFPLR AYS+TINKSQGQTLS+IGLDL S F+HGQLYV LSR+QNR++I CLLP T + D +P+TD +V+
Sbjct: 371 FTRKQFPLRTAYSMTINKSQGQTLSKIGLDLRSSPFAHGQLYVALSRSQNRTSIMCLLPDTHIIDGIPYTDNIVY 445
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE) HSP 1 Score: 102 bits (254), Expect = 4.040e-24 Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
F RVQFPLR AY++TINKSQGQTL +IGLDL S F+HGQLYV L+RAQ RS + LLP +QV D VP+T+ VV+
Sbjct: 234 FMRVQFPLRSAYAMTINKSQGQTLKKIGLDLRSSPFAHGQLYVALTRAQKRSTVMVLLPHSQVVDGVPYTENVVY 308
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH) HSP 1 Score: 91.7 bits (226), Expect = 8.130e-20 Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 19 QRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
+R QFPLR+AY LT NKSQGQTL+R+G+DL S VFSHGQLYV L R + +K L+P +V +NVPHT VV+
Sbjct: 540 RRRQFPLRLAYGLTKNKSQGQTLNRVGVDLRSDVFSHGQLYVALGRVRKSCDLKVLVPQQRVINNVPHTHNVVY 613
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5KXS1_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS1_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.890e-19 Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHT 225
F R+Q PLRV Y+LTINKSQGQTLS+IGLDL S VF+HGQLYV LSRAQ RS+I CL ++ ++ T
Sbjct: 212 FSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARLRGSLNRT 281
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5KLU2_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU2_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 3.930e-19 Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1
Query: 16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCL 186
F R+Q PLRV Y+LTINKSQGQTLS+IGLDL S VF+HGQLYV LSRAQ RS+I CL
Sbjct: 244 FSRLQLPLRVRYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 300
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 6.210e-19 Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHT 225
F R+Q PLRV Y+LTINKSQGQTLS+IGLDL S VF+HGQLYV LSRAQ RS+I CL ++ ++ T
Sbjct: 321 FSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARLRGSLNRT 390
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 7.300e-19 Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHT 225
F R+Q PLRV Y+LTINKSQGQTLS+IGLDL S VF+HGQLYV LSRAQ RS+I CL ++ ++ T
Sbjct: 698 FSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARLRGSLNRT 767
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: UPI00064DC8B6 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DC8B6) HSP 1 Score: 82.8 bits (203), Expect = 1.520e-18 Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 13 RFQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPS-----TQVNDNVPHTD 228
+FQR QFPL V++++TINKSQGQTLS +GL L VFSHGQLYVTLSR ++RS IK L+ S T V +NV + +
Sbjct: 52 KFQRRQFPLMVSFAMTINKSQGQTLSHVGLYLPRPVFSHGQLYVTLSRVKSRSGIKILINSESGDTTNVKNNVAYKE 128
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: UPI001ED8867E (uncharacterized protein LOC124173554 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8867E) HSP 1 Score: 87.4 bits (215), Expect = 2.570e-18 Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 22 RVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
R QFPL+VAY +TINK+QGQTL ++GLDL S VFSHGQLYV L R + + I+ L+P ++ D PHT +V
Sbjct: 1462 RRQFPLKVAYGMTINKAQGQTLDKVGLDLRSDVFSHGQLYVALGRVRRAADIRVLVPEDRILDECPHTANIVI 1534
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: UPI001E68D7A0 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E68D7A0) HSP 1 Score: 83.6 bits (205), Expect = 3.860e-17 Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query: 22 RVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
R QFPL+V Y++TI+KSQGQT+ R+G+DL S VFSHGQLYV LSRAQ+R IK L+ +V + P + VV+
Sbjct: 311 RRQFPLQVCYAMTIHKSQGQTICRVGVDLRSDVFSHGQLYVALSRAQHRQNIKILISEERVINGNPLANNVVY 383 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig57054.13254.1 >prot_H-paniculata_contig57054.13254.1 ID=prot_H-paniculata_contig57054.13254.1|Name=mRNA_H-paniculata_contig57054.13254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp MRCTRFQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLback to top mRNA from alignment at H-paniculata_contig57054:429..668+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig57054.13254.1 ID=mRNA_H-paniculata_contig57054.13254.1|Name=mRNA_H-paniculata_contig57054.13254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig57054:429..668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig57054:429..668+ >mRNA_H-paniculata_contig57054.13254.1 ID=mRNA_H-paniculata_contig57054.13254.1|Name=mRNA_H-paniculata_contig57054.13254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig57054:429..668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |