mRNA_H-paniculata_contig57054.13254.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57054.13254.1
Unique NamemRNA_H-paniculata_contig57054.13254.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.910e-26
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:   16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
            F R QFPLR AYS+TINKSQGQTLS+IGLDL S  F+HGQLYV LSR+QNR++I CLLP T + D +P+TD +V+
Sbjct:  371 FTRKQFPLRTAYSMTINKSQGQTLSKIGLDLRSSPFAHGQLYVALSRSQNRTSIMCLLPDTHIIDGIPYTDNIVY 445          
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.040e-24
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
            F RVQFPLR AY++TINKSQGQTL +IGLDL S  F+HGQLYV L+RAQ RS +  LLP +QV D VP+T+ VV+
Sbjct:  234 FMRVQFPLRSAYAMTINKSQGQTLKKIGLDLRSSPFAHGQLYVALTRAQKRSTVMVLLPHSQVVDGVPYTENVVY 308          
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH)

HSP 1 Score: 91.7 bits (226), Expect = 8.130e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   19 QRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
            +R QFPLR+AY LT NKSQGQTL+R+G+DL S VFSHGQLYV L R +    +K L+P  +V +NVPHT  VV+
Sbjct:  540 RRRQFPLRLAYGLTKNKSQGQTLNRVGVDLRSDVFSHGQLYVALGRVRKSCDLKVLVPQQRVINNVPHTHNVVY 613          
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5KXS1_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS1_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.890e-19
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHT 225
            F R+Q PLRV Y+LTINKSQGQTLS+IGLDL S VF+HGQLYV LSRAQ RS+I CL    ++  ++  T
Sbjct:  212 FSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARLRGSLNRT 281          
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5KLU2_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.930e-19
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1
Query:   16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCL 186
            F R+Q PLRV Y+LTINKSQGQTLS+IGLDL S VF+HGQLYV LSRAQ RS+I CL
Sbjct:  244 FSRLQLPLRVRYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 300          
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 6.210e-19
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHT 225
            F R+Q PLRV Y+LTINKSQGQTLS+IGLDL S VF+HGQLYV LSRAQ RS+I CL    ++  ++  T
Sbjct:  321 FSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARLRGSLNRT 390          
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 7.300e-19
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   16 FQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHT 225
            F R+Q PLRV Y+LTINKSQGQTLS+IGLDL S VF+HGQLYV LSRAQ RS+I CL    ++  ++  T
Sbjct:  698 FSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCLTLPARLRGSLNRT 767          
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: UPI00064DC8B6 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DC8B6)

HSP 1 Score: 82.8 bits (203), Expect = 1.520e-18
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   13 RFQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPS-----TQVNDNVPHTD 228
            +FQR QFPL V++++TINKSQGQTLS +GL L   VFSHGQLYVTLSR ++RS IK L+ S     T V +NV + +
Sbjct:   52 KFQRRQFPLMVSFAMTINKSQGQTLSHVGLYLPRPVFSHGQLYVTLSRVKSRSGIKILINSESGDTTNVKNNVAYKE 128          
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: UPI001ED8867E (uncharacterized protein LOC124173554 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8867E)

HSP 1 Score: 87.4 bits (215), Expect = 2.570e-18
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   22 RVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
            R QFPL+VAY +TINK+QGQTL ++GLDL S VFSHGQLYV L R +  + I+ L+P  ++ D  PHT  +V 
Sbjct: 1462 RRQFPLKVAYGMTINKAQGQTLDKVGLDLRSDVFSHGQLYVALGRVRRAADIRVLVPEDRILDECPHTANIVI 1534          
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Match: UPI001E68D7A0 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E68D7A0)

HSP 1 Score: 83.6 bits (205), Expect = 3.860e-17
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   22 RVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTLSRAQNRSAIKCLLPSTQVNDNVPHTDKVVF 240
            R QFPL+V Y++TI+KSQGQT+ R+G+DL S VFSHGQLYV LSRAQ+R  IK L+   +V +  P  + VV+
Sbjct:  311 RRQFPLQVCYAMTIHKSQGQTICRVGVDLRSDVFSHGQLYVALSRAQHRQNIKILISEERVINGNPLANNVVY 383          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57054.13254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9C5_9PHAE3.910e-2668.00ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0V2_9PHAE4.040e-2466.67ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A2G3AQD7_CAPCH8.130e-2060.81ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]
A0A6H5KXS1_9PHAE1.890e-1964.29ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A6H5KLU2_9PHAE3.930e-1977.19ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A6H5JNR7_9PHAE6.210e-1964.29ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE7.300e-1964.29ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI00064DC8B61.520e-1858.44ATP-dependent DNA helicase PIF1-like n=1 Tax=Eryth... [more]
UPI001ED8867E2.570e-1856.16uncharacterized protein LOC124173554 n=1 Tax=Ischn... [more]
UPI001E68D7A03.860e-1757.53ATP-dependent DNA helicase PIF1-like n=1 Tax=Manio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57054contigH-paniculata_contig57054:429..668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score81.3
Seed ortholog evalue2.3e-13
Seed eggNOG ortholog4096.XP_009765277.1
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs37I5H@33090,3GC0A@35493,COG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.D
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930612.2610323-CDS-H-paniculata_contig57054:428..6681622930612.2610323-CDS-H-paniculata_contig57054:428..668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57054 429..668 +
1691481372.1687458-CDS-H-paniculata_contig57054:428..6681691481372.1687458-CDS-H-paniculata_contig57054:428..668Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57054 429..668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57054.13254.1prot_H-paniculata_contig57054.13254.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57054 429..668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57054.13254.1

>prot_H-paniculata_contig57054.13254.1 ID=prot_H-paniculata_contig57054.13254.1|Name=mRNA_H-paniculata_contig57054.13254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MRCTRFQRVQFPLRVAYSLTINKSQGQTLSRIGLDLCSFVFSHGQLYVTL
SRAQNRSAIKCLLPSTQVNDNVPHTDKVVF
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mRNA from alignment at H-paniculata_contig57054:429..668+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57054.13254.1 ID=mRNA_H-paniculata_contig57054.13254.1|Name=mRNA_H-paniculata_contig57054.13254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig57054:429..668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTGTACTCGATTTCAACGAGTTCAATTCCCTCTCCGGGTTGCATA CTCTCTAACCATTAACAAGTCTCAGGGACAAACACTTTCACGAATAGGCC TGGACCTGTGTAGCTTCGTCTTCTCACACGGTCAACTCTACGTGACGCTC AGTCGCGCTCAAAATCGTTCTGCCATCAAATGCCTGTTGCCTTCGACTCA AGTCAACGACAATGTGCCCCATACAGACAAGGTCGTATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig57054:429..668+

>mRNA_H-paniculata_contig57054.13254.1 ID=mRNA_H-paniculata_contig57054.13254.1|Name=mRNA_H-paniculata_contig57054.13254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig57054:429..668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTTGTACTCGATTTCAACGAGTTCAATTCCCTCTCCGGGTTGCATA
CTCTCTAACCATTAACAAGTCTCAGGGACAAACACTTTCACGAATAGGCC
TGGACCTGTGTAGCTTCGTCTTCTCACACGGTCAACTCTACGTGACGCTC
AGTCGCGCTCAAAATCGTTCTGCCATCAAATGCCTGTTGCCTTCGACTCA
AGTCAACGACAATGTGCCCCATACAGACAAGGTCGTATTTATGCGTTGTA
CTCGATTTCAACGAGTTCAATTCCCTCTCCGGGTTGCATACTCTCTAACC
ATTAACAAGTCTCAGGGACAAACACTTTCACGAATAGGCCTGGACCTGTG
TAGCTTCGTCTTCTCACACGGTCAACTCTACGTGACGCTCAGTCGCGCTC
AAAATCGTTCTGCCATCAAATGCCTGTTGCCTTCGACTCAAGTCAACGAC
AATGTGCCCCATACAGACAAGGTCGTATTT
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