mRNA_H-paniculata_contig57044.13253.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57044.13253.1
Unique NamemRNA_H-paniculata_contig57044.13253.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: A0A6B7F270_9PHAE (Uncharacterized protein ycf33 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7F270_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.980e-33
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLDFD 192
            MVFWDNLLRYPRFFISSMIGLILVVINPIINQ K FNDKKIIYLFLFISLITLF +LKEML+FD
Sbjct:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQFKKFNDKKIIYLFLFISLITLFCILKEMLNFD 64          
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: A0A8F0JYS8_9PHAE (Uncharacterized protein ycf33 n=8 Tax=Laminariales TaxID=2886 RepID=A0A8F0JYS8_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.050e-25
Identity = 47/64 (73.44%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLDFD 192
            MVFWDNLLRYPRFFISSMIGLIL+++ PIINQLK FNDK+I++ FL   LITLF +LKEML+ +
Sbjct:    1 MVFWDNLLRYPRFFISSMIGLILILLTPIINQLKKFNDKRIVFFFLISILITLFCILKEMLNIE 64          
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: A0A0R6M2R2_UNDPI (Uncharacterized protein ycf33 n=4 Tax=Laminariales TaxID=2886 RepID=A0A0R6M2R2_UNDPI)

HSP 1 Score: 96.3 bits (238), Expect = 6.110e-25
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLD 186
            MVFWDNLLRYPRFFISSM+GLIL+++ PII QLK F DKKIIY FL   LITLF++LKEML 
Sbjct:    1 MVFWDNLLRYPRFFISSMLGLILILLTPIIEQLKKFKDKKIIYFFLISILITLFYILKEMLS 62          
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: A0A1I9LW10_9PHAE (Uncharacterized protein ycf33 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW10_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.020e-23
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLDFD 192
            M+FWDNLLRYPRFFISSM+GLILV+INP+I  LK F+DKKIIY+     LITLF +LKEML+F+
Sbjct:    1 MIFWDNLLRYPRFFISSMLGLILVLINPMIIWLKKFDDKKIIYIXXXXXLITLFCILKEMLNFE 64          
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: A0A8F0F926_9PHAE (Uncharacterized protein ycf33 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A8F0F926_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.020e-23
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLDFD 192
            M+FWDNLLRYPRFFISSM+GLIL+++ PII Q K FNDKKII+ FL   LITLF +LK ML  D
Sbjct:    1 MIFWDNLLRYPRFFISSMLGLILILLTPIIEQFKKFNDKKIIFFFLISILITLFCILKGMLSID 64          
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: A0A344PFF7_9PHAE (Uncharacterized protein ycf33 n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFF7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.910e-23
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLDFD 192
            M+FWDNLLRYPRFF+SSMIGLIL++INPI+  LK F+DKKIIY+F    ++TLF +LK ML+F+
Sbjct:    1 MIFWDNLLRYPRFFLSSMIGLILILINPIVVILKKFDDKKIIYIFFISVVVTLFCILKAMLNFE 64          
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: A0A5A4MNY1_9PHAE (Uncharacterized protein ycf33 n=1 Tax=Hapterophycus canaliculatus TaxID=2567908 RepID=A0A5A4MNY1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.910e-23
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLDFD 192
            MVFWDN+LRYPRFF+SSMIGLILV+INPI+  LK F+DKKIIY+F    L++LF +LK ML+FD
Sbjct:    1 MVFWDNILRYPRFFLSSMIGLILVLINPIVVILKKFDDKKIIYVFFIGVLVSLFCILKAMLNFD 64          
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: A0A0S0GM32_COSCS (Uncharacterized protein ycf33 n=12 Tax=Laminariales TaxID=2886 RepID=A0A0S0GM32_COSCS)

HSP 1 Score: 91.3 bits (225), Expect = 5.880e-23
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLDFD 192
            MVFWDNLLRYPRFFISSM+GL+L+++ PI+ QLK FNDKKII+ F+   LITLF +LK ML  +
Sbjct:    1 MVFWDNLLRYPRFFISSMLGLVLILLTPILEQLKKFNDKKIIFFFVISILITLFCILKGMLSME 64          
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: D1J6Z8_ECTSI (Uncharacterized protein ycf33 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J6Z8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.190e-22
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLDFD 192
            MVFWDNLLRYPRFF+SSMIGLILV+INP+I  LK F+DKK+IY+     LI LF +LKEML+ +
Sbjct:    1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIAVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 64          
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Match: A0A8F0JZX0_9PHAE (Uncharacterized protein ycf33 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZX0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.920e-21
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISLITLFWVLKEMLDFD 192
            M+FWDNLLRYP+FFISSMIGLIL+++NPIINQ+K FN+K I++L L      LF++LKEML  D
Sbjct:    1 MIFWDNLLRYPKFFISSMIGLILILLNPIINQMKKFNNK-IVFLILIXXXXVLFYILKEMLTID 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57044.13253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B7F270_9PHAE4.980e-3392.19Uncharacterized protein ycf33 n=1 Tax=Cladosiphon ... [more]
A0A8F0JYS8_9PHAE1.050e-2573.44Uncharacterized protein ycf33 n=8 Tax=Laminariales... [more]
A0A0R6M2R2_UNDPI6.110e-2575.81Uncharacterized protein ycf33 n=4 Tax=Laminariales... [more]
A0A1I9LW10_9PHAE1.020e-2371.88Uncharacterized protein ycf33 n=1 Tax=Pleurocladia... [more]
A0A8F0F926_9PHAE1.020e-2370.31Uncharacterized protein ycf33 n=2 Tax=Laminariacea... [more]
A0A344PFF7_9PHAE2.910e-2367.19Uncharacterized protein ycf33 n=3 Tax=Scytosiphona... [more]
A0A5A4MNY1_9PHAE2.910e-2370.31Uncharacterized protein ycf33 n=1 Tax=Hapterophycu... [more]
A0A0S0GM32_COSCS5.880e-2367.19Uncharacterized protein ycf33 n=12 Tax=Laminariale... [more]
D1J6Z8_ECTSI1.190e-2268.75Uncharacterized protein ycf33 n=2 Tax=Ectocarpus s... [more]
A0A8F0JZX0_9PHAE1.920e-2165.63Uncharacterized protein ycf33 n=1 Tax=Desmarestia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57044contigH-paniculata_contig57044:658..852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size195
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930612.2005315-CDS-H-paniculata_contig57044:657..8521622930612.2005315-CDS-H-paniculata_contig57044:657..852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57044 658..852 +
1691481372.1553917-CDS-H-paniculata_contig57044:657..8521691481372.1553917-CDS-H-paniculata_contig57044:657..852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57044 658..852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57044.13253.1prot_H-paniculata_contig57044.13253.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57044 658..852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57044.13253.1

>prot_H-paniculata_contig57044.13253.1 ID=prot_H-paniculata_contig57044.13253.1|Name=mRNA_H-paniculata_contig57044.13253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MVFWDNLLRYPRFFISSMIGLILVVINPIINQLKNFNDKKIIYLFLFISL
ITLFWVLKEMLDFD*
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mRNA from alignment at H-paniculata_contig57044:658..852+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57044.13253.1 ID=mRNA_H-paniculata_contig57044.13253.1|Name=mRNA_H-paniculata_contig57044.13253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig57044:658..852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTCTGGGATAATTTACTCCGTTACCCGAGATTTTTTATATCTTC AATGATTGGTTTAATTTTAGTAGTTATAAACCCCATTATTAATCAGTTAA AAAATTTTAATGACAAAAAAATAATATATCTATTTTTATTTATTTCTTTG ATTACTCTATTTTGGGTTTTAAAAGAAATGCTTGATTTTGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig57044:658..852+

>mRNA_H-paniculata_contig57044.13253.1 ID=mRNA_H-paniculata_contig57044.13253.1|Name=mRNA_H-paniculata_contig57044.13253.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig57044:658..852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTCTGGGATAATTTACTCCGTTACCCGAGATTTTTTATATCTTC
AATGATTGGTTTAATTTTAGTAGTTATAAACCCCATTATTAATCAGTTAA
AAAATTTTAATGACAAAAAAATAATATATCTATTTTTATTTATTTCTTTG
ATTACTCTATTTTGGGTTTTAAAAGAAATGCTTGATTTTGATTAAATGGT
TTTCTGGGATAATTTACTCCGTTACCCGAGATTTTTTATATCTTCAATGA
TTGGTTTAATTTTAGTAGTTATAAACCCCATTATTAATCAGTTAAAAAAT
TTTAATGACAAAAAAATAATATATCTATTTTTATTTATTTCTTTGATTAC
TCTATTTTGGGTTTTAAAAGAAATGCTTGATTTTGATTAA
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