prot_H-paniculata_contig5700.13250.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5700.13250.1
Unique Nameprot_H-paniculata_contig5700.13250.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length598
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5700.13250.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 559..579
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 374..574
coord: 278..476
coord: 224..408
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 298..324
e-value: 7.8E-4
score: 19.5
coord: 481..510
e-value: 0.0023
score: 18.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 331..380
e-value: 7.1E-9
score: 35.7
coord: 515..562
e-value: 2.0E-8
score: 34.3
coord: 224..270
e-value: 6.3E-9
score: 35.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 481..510
e-value: 4.3E-4
score: 18.3
coord: 371..398
e-value: 6.3E-5
score: 20.9
coord: 227..260
e-value: 1.6E-6
score: 25.9
coord: 410..436
e-value: 0.0013
score: 16.8
coord: 299..326
e-value: 0.001
score: 17.1
coord: 334..363
e-value: 2.5E-5
score: 22.1
coord: 447..476
e-value: 1.4E-4
score: 19.8
coord: 519..551
e-value: 6.9E-7
score: 27.1
coord: 262..295
e-value: 2.9E-6
score: 25.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 393..457
e-value: 6.0E-7
score: 29.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 332..366
score: 10.249
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 295..329
score: 9.712
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 369..403
score: 9.613
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 551..586
score: 8.528
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 224..258
score: 10.918
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 516..550
score: 11.06
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 406..440
score: 9.229
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 259..293
score: 10.008
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 479..513
score: 9.186
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 444..478
score: 10.084
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 166..290
e-value: 1.9E-19
score: 71.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 292..436
e-value: 1.9E-38
score: 134.5
coord: 437..590
e-value: 1.4E-36
score: 128.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5700contigH-paniculata_contig5700:10632..12425 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5700.13250.1mRNA_H-paniculata_contig5700.13250.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5700 8571..12548 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5700.13250.1 ID=prot_H-paniculata_contig5700.13250.1|Name=mRNA_H-paniculata_contig5700.13250.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=598bp
MAFLHAAGAVSKSSQYSRRFFCVRKAGNAAHLYQAGISSAEHLSAEEETE
PARARRINRQGLEGHSMATARRSGRYWGSWGRASSKYDIRQDKRRESWSD
ELQSQTGAKHEAPRHNRNRPSGEQLQGEQIRSQYRFNQSWHDETQDRRPE
VYEGRRERRATEHGGGSQRAQHKRLREDSASHVRRVQRPLLRQLNKAGAR
GDWKFAELLLTDALSRPNGREVVDVRVYAAAMDAAAKKGEWEKALKVLNR
MRAESVQPNEIAYNQVIRACGNGGEWKRALGILREMQKSRWIKPTAVNYN
TAITACANSGQWEPAVRLLREMQDADTPISPSVVSFTATMTACGKGGQWE
KAISLLREMQQKGGSISPDTFSYSAAISACGLAGNVKEAVDLLREMEAST
SSVAPNVLNYNAAITACANGGQWEQAVQILTQMKKARREDVVPNAISYAG
AIAACGKAGRPEQALTLLRVMQKEGVASHRVAYHAAITACQECGQWRDAV
DLLREMRKEGGLVTPDAASYTAAIAACGKGGQWAQALALFKMMKRASIYP
DNECYSAVIEACRDSNQLEEAERLRAEKESSMGMTPADDYVISDNVL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf