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Homology
BLAST of mRNA_H-paniculata_contig57.13245.1 vs. uniprot
Match: A0A6H5KA79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA79_9PHAE) HSP 1 Score: 214 bits (544), Expect = 4.470e-60 Identity = 137/229 (59.83%), Postives = 162/229 (70.74%), Query Frame = 1
Query: 10 GNGGVERLTIQACFKEEREAFIRDLQVLHRQLEAKDRDRARREREYQEATARARVEARSAQERVGLLRKEAEDALSAKGAAEAMAEAASNSLERQTAAVESLRARLRHTERQHKEQMDVTRRQQSAATEDATTERRRLESAALTARKALTDERREWSADKDTLLAAVREACHRADLASGEAEEAKANALSLEGRLQQTLERESTLNTTVDKEREAAREAERRVARAEGD 696
G G LT+Q CF++ERE+FIRDLQVLHRQL+AKDRD ARR+ E Q A +R R EAR+A+ER LRKE A A+ L+RQ AA E+LRARLRH ER HKEQM+V RQQ AA E ERRRLES+ALTARK+L+D RR+W+A+KDTL+AAVREA RADLA E EAK+ A LE RLQQTLERE+ LN V+ +AR+ ERRVARA D
Sbjct: 253 GGDGTSMLTMQTCFRQERESFIRDLQVLHRQLDAKDRDHARRDAESQAAFSRVRAEARAARERAASLRKETXXXXXXXXXXXARVGVAAEELDRQAAAAETLRARLRHAERLHKEQMEVEHRQQKAAAEXXXAERRRLESSALTARKSLSDARRDWAAEKDTLIAAVREAGQRADLALAEGSEAKSRAALLEERLQQTLEREAALNAEVESLAGSARDGERRVARAVAD 481
BLAST of mRNA_H-paniculata_contig57.13245.1 vs. uniprot
Match: D7FYF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF0_ECTSI) HSP 1 Score: 205 bits (521), Expect = 5.440e-57 Identity = 134/226 (59.29%), Postives = 159/226 (70.35%), Query Frame = 1
Query: 19 GVERLTIQACFKEEREAFIRDLQVLHRQLEAKDRDRARREREYQEATARARVEARSAQERVGLLRKEAEDALSAKGAAEAMAEAASNSLERQTAAVESLRARLRHTERQHKEQMDVTRRQQSAATEDATTERRRLESAALTARKALTDERREWSADKDTLLAAVREACHRADLASGEAEEAKANALSLEGRLQQTLERESTLNTTVDKEREAAREAERRVARAEGD 696
G LT+Q CF++ERE+FIRDLQVLHRQL+AKDRD ARR+ E Q A + AR EAR+A+ER LRKE A+ L+RQTAA E+LRARLRH ER HKEQM+V RQQ AA ERRRLES+ALTARK+L+D RR+W+A+KDTL+AAVREA RADLA E EAK+ A L RLQQTLERE+ LN V+ +AR+ ERRVARA D
Sbjct: 305 GTRMLTMQTCFRQERESFIRDLQVLHRQLDAKDRDHARRDAEGQAAFSGARAEARAARERAASLRKEXXXXXXXXXXXXXXVGVAAEELDRQTAAAETLRARLRHAERLHKEQMEVEHRQQKAAAXXXXXERRRLESSALTARKSLSDARRDWAAEKDTLIAAVREAGQRADLALAEGTEAKSRAALLGERLQQTLEREAALNAEVESLAGSARDGERRVARAVAD 530
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-08_003810.1 |
| Exons | 5 |
| Model size | 696 |
| Cds size | 696 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig57.13245.1 >prot_H-paniculata_contig57.13245.1 ID=prot_H-paniculata_contig57.13245.1|Name=mRNA_H-paniculata_contig57.13245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp
GKGGNGGVERLTIQACFKEEREAFIRDLQVLHRQLEAKDRDRARREREYQ EATARARVEARSAQERVGLLRKEAEDALSAKGAAEAMAEAASNSLERQTA AVESLRARLRHTERQHKEQMDVTRRQQSAATEDATTERRRLESAALTARK ALTDERREWSADKDTLLAAVREACHRADLASGEAEEAKANALSLEGRLQQ TLERESTLNTTVDKEREAAREAERRVARAEGD back to topmRNA from alignment at H-paniculata_contig57:20459..26620+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig57.13245.1 ID=mRNA_H-paniculata_contig57.13245.1|Name=mRNA_H-paniculata_contig57.13245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6162bp|location=Sequence derived from alignment at H-paniculata_contig57:20459..26620+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGGAAAGGTGGCAACGGCGGCGTGGAACGGCTCACGATCCAGGCGTGCTT
TAAGGAGGAACGGGAAGCATTCATCCGCGATCTGCAGGTGATAGTTGGAA
TAGCATTAGTCGTGCTAGTGATGGTGGTGGTGGTGGTGGTGGTGGTGGTG
ATGATGATGACAACGATAGTAAGTGTGATCGCAGTATGTTTGATAATCTG
GGATGTTCCAAATTGGACGGCACTCAGAGTCGAAACAATTCGGATTCCGC
CCAATTCTATATTTTCTCGCTGGAAGTGACCTATTTGTAGATGACAAGTG
CGCACAATGGGTAATAGGTCATTTGGAACAAGCCCGATAATCTGAGGTGT
CTAAAATCTGGTGGCACCCGGAATTGGAGCAATTCGGATTCCGTCCAATT
CCAGCTTCTGTTTATCGCATGTTGCTTTCTATTGGATGATGACTGCTGGT
GGCTGCTAGGGCGCGGTCACGAGCGATAGCGATTTTTTCATCTGGTTCTC
ACTGTTCGATATGGTGACATTTTTGGATCCTTTATTACAAGCGATGGATT
GTACTGTATACCCGAGGTTACGTGTTATGATCGCGACGCTGTTCCTTCAG
GCATGTGGAATTTGGACGCAATGGACCACAATATGGAAAAGTCAAACTCG
TGGTCAAAGCATTGCAAACGTGTTTCGAGACAACGGCAGCAGAATAGGCA
CGGTGGGACTTGGATACAGTAATCAATACTTTCCCAAAAATAACCAGCAT
AGTCGAAGTGACGTTTTGGATCAAAAATATAAACACTTGCAATTAGTGTT
GATTTTTATTTCGAATGAGTGAATACCCTCGAATCCCAAAATTTCGACCC
CCGGCAAGGACCAAAGCTGAAGACAGGATCAGCTGCAGCGTGTAGCATTA
TTTGCATGCACGGCCAAAAAGCATAAACTAATAAAAATATCCATGCTACT
CCTTTTCTTTCGCCGAAACCAGAAACAAACACATCATGCTCTTGCTTCTC
AGTTTCTTATTAGCGAGCTGGTATTCCAACAGCATAGCCATAGTCCACGA
TAAAAAAGTGGAGAGAAAGTAGGTATAAATATTCCGAGAAAACGACCGGC
AGTGTAGGCAGTCACGCGGTAGATAGATCGGTCAAGCCAGCTACTGAGAT
CATGGAGATATATTGTTGTTGTTGGTTGTTGTTGGTTGTTGTGAGGATGA
TGTCATTGCAGGCAGCAGTGGTCAAAAGGGAAAAAACACGTGTTCAGAAA
ACCAAAAGCAAAGTCGTCGATGTGCTGTAGTACGTAAATGTATATACTAG
TAATGATCGCGTGATGCTCGTGTACCTGAACATTTAGCTTTTTTCCCTGT
TCACCCCTGTTTGGTTTAGCGGAGGCACGATGCGAAAAACAACCGATCTC
AGTCTCAGAATAGGTTGGCCCAACTCGTAACCTCTTATTATGGAGCTCTA
GAGACAGGTCAGCAGTGCCTGAGAAAACGCACTACGTACCCGTATAGCAT
TAACTTTGCACTTCTACTTTCTCCAACATGCCCCCCCCCCAGTTGTTTCT
CACTTCACTGATGAATCTATCTATGTAACTATGAATGCAGGTTAGATAAC
CTCAGCGTGACATGCACGACACACGCTGAAGTAAACGCAGTACAAGTTCA
CATATGGCCCGGCGGGTTCACAGTTTTTTCAGAGTTCTTGTCTGGGCACC
AGTGTGTTTGCTGTCAACCCCCCTCTCCCCCCCGCTGTATCCGGGATACC
CAAGAAACCCACGTCACACCAAGTTGGGCGCAGCAGTGCAAGAGTAACGG
CAAGCAGCCGGTGTTGCATACATGACCCATTTCAAACAGAGCCAGGGCCG
GTGCAAAGCCCGCATGATGATAATAATGTTGCTCCTCAGTGGTGATGCCA
AGGTCACTAGTCCCTGACTATAGCAGGCGTTTTCCTACGTATGTACCCTC
TACCCCGCCTAGTTCCTTTTGTTCCCACCCCACCTCCTCCCGATCATTGT
TACTGACCTCCCTTTTGGGTCTGAAAATCTCGGATGAGTATTTTCAGCCG
TAGCAGTGGCCAAAATTCCCATCAACTCCCCTCCCCCCCCCGCCCCCCCC
GGTACCCCCCTTTCTTCCTGCTCCTCAACGTCCTCTTGTATGTAAACCCA
AAGGTTCTCCATCGGCAGCTGGAGGCCAAAGACCGAGATCGCGCGCGACG
AGAGCGGGAGTACCAGGAGGCCACGGCCCGAGCGCGGGTCGAGGCCCGGT
CTGCCCAGGAGCGAGTGGGTCTACTAAGGAAAGAGGCCGAGGACGCGCTG
AGCGCTAAAGGAGCGGCGGAGGCTATGGCGGAAGCGGCGTCCAACAGCTT
GGAAAGGCAGACCGCGGCCGTAGAGGTGTGAAATAGTGTGCTTTTGTTTG
TCCATCTGCTTGTGTTGTATGTTTTTGTTTCTGATGGCGTGCGTGTTTGC
GAAATTATGTGCGGCATAATAGAGTTGCACAATTATCGAGGGACGAAGGG
TGTAGTTATGTACTAGAAAAAAACGCGTATGATAGTCCCTCGACCATTGA
CCTCGCATCCCTACAATGCCAGGATGGAGCACGCCGGGTTTTCGTCGACC
AGGCTGCGCTTTCACAAGGGTGGTACTAGCCACTGCTGTAGTCATCATCC
ATCCTCGCGTTGCTACGCCAACCGGATCATCGGGGTAATCAAATGTTGCA
CATGCGGCAGGCATGACTATTCCTAAATCACCACACCGGACTTGAGCCTT
GCGCGCACGTATAAACAACGTCGGGCCACTACACAGTCAACGGTGGGGGG
GGGTGCGGGGGAGTTGAAACGGTCTAATTGTTAGGCGCGTTCCGCGGATG
CAACCCGCTGAATAGGATATAAGATCTAACTTGGTGAAAATTGGTGTTTG
ATAATTATCATGGGAGAAGTTCACCGACTTGATTTTTATCAAGAGAAAAA
ACGCTGTGATCGTTCAACAATTCAGCATACTTCTGCCGACATGTGCCATT
GCGACACCTATGGTAACAGGCCTAGCCAATTTCACGGTGATATATGCTGA
GTGACGAGGGTTACGTGTCGAGTTTCGTGGCGCATAGAGTATCTGCATTT
GTATTTACCTAGCATACGGGGGGCGGGGTGCCTGTTGCCGATCGTCGTTT
CACGCTGTTTGGTGTGTAGAAGAGCGCGGCGTTGATATATATAGCTGATG
GAAGACCCAAATCTCCACGTGGGATTATGTACTCCCTTCCTCCATTAAGG
TATAATGGTCATAGTTTGGTGTCCACTTTTTTGGTTTATTTTAGAGGGTG
GCAAGGGAGGTGGGTCATTATCCACACACATTCAGCGATTAACGAGTCGG
GGCTAGGCGACTGCTGCGAACGTGGTAGCCCTTGACAACCCCAAAGCTCC
GACCCGAGGCAGGCGCTAAAAGGCTTTAGTCGGGGTCGGCTGCAACATAG
TACACCAGTATGCATAGAGCTACACAAGCAGCACTGGAGAAAGAAGGACC
TTCGTTTTTCTATCAGGGTTAAGGGTCGGTGGTACATATTGGTGGCCCTA
GGTCCGATTCTTTGGTTGTTAAATGTGTGGGTCGTTCGTGGAATAGTTTC
CATTACTTATTACCCCCAGAAAGGACAAAAACTTTGAGATTCGTGCATGG
GTTTCCCGACGGAAGGTCGTTTGTCTTCCCCTGCTGCTGTGTGTCGTGCG
GCCCCAATTCGTTGCTCCCTTGGTTGACCATCGTCGCTTTTTTTTCTTTG
GTCTGCGCCAATGTAATGTTTTGCTGTCAGAGCCTGCGGGCTCGTTTGCG
CCACACCGAGCGCCAGCACAAGGAACAGATGGACGTAACGCGAAGGCAGC
AAAGCGCGGCGACAGAAGGTATGTTCACCACCATCTTGTTACCTCCCTAT
TTATTGCCCAATAGGGTGCCTCCTCGGTAGAGTCGGGGTATGATATGACG
TGCCCCTGGTGTAGGATTGATATAAACCAAATTGAATAGAATTAGATTAC
CTTAAATCAAATTAGAATCGAGTGTGATAAAATCGTGCCTTGCGATAGTA
GGGCACGGTTCTGTACAACTACACTATTTGCACATCTTGTTTTGCACACG
TTGACAGGGCAACTCCGAGGAGTAGGTAGAGTGGCTATGCTCTCGTTCTC
GGTTTTGGGGTTGAAATATATCGAATCAACATTGAATCAGAATGGGAATT
GATCTATCTCAGTTTAGTTCAATGTAAATGGATCAAGATCAAGATCAAGA
TCAAGATCAAGATCAAAATCAAGATCAAAATCAAGATCAAAAGCACAATC
AAAAGTAAGATCAAAAGCAAGATCAGAATCAAGACCAAAACCAAATGACA
GATGCCACTACGGAGCGCCGCCGCCTGGAATCGGCGGCCCTCACTGCCAG
AAAGGCTTTGACGGACGAGCGACGGGAGTGGTCCGCCGACAAGGATACCC
TTTTGGCCGCGGTGCGGGAGGCGTGCCACAGAGCGGATCTTGCCAGCGGA
GAGGCGGAAGAAGCTAAGGTCAGCAGTTTTCTAGTAGCCAACAATTCTCA
GTTTGCAGCTAGCAAGCCCGGGCGGGAGTTGGAAGGTGGGGCGGGGCGCG
GGGAGGTATCTCCTGGGATGAATACCTCTGCCGCACCCATTAGTTAAAAG
CATCATAACACATGCGTCGCTGAGATTATGTAGCTTTCATTCCTCACGCA
TGACACCCGGAAAGTGCTATCTGCCTCTCCCGTATCCACCCCTTCAGCGC
CGAGGCGTTCAGCAGAGGTCATGATACTTGGGGACCGGAGTGTGTGTGAT
AAAATGGCCTTCATGTGAACGCATGACCAAAACAAAATCCACCGCAAGCT
TCATTCATAAGTCAATCGACGCACCACAGATACTATAGAACGTTAACGCT
CGTATTTATAACTCCATCATCGTCCCCATGTTGATGTTACCCAGCTGACT
AAGCTCAAACTTATATTGTGTACGCTTACCAGCAAAATTAGACCAATAAG
TGGTGAGCGATGACCTTTACGTCGGAAAAGTAGTATGCTTTTATGTGTAA
TTCCGTGTGCTGGTTCGGTGTGTCACGGTTCGAGCGTTTTTTGTTGTCGT
GTGTGTGGGCTGGGAGCTTAAAGGCATTTGTGCGTATACACTGGTAGCCA
ATGGCAGCGGTCCATGCGATTGTGTTGTAGGGTGTCAAATCCAAGCGTAT
GATATTGCTTGGTACTGCTGGCTTGTTGTTGGGTTGGTCAGATTTCGGGG
GAGCAGAGCGAAAATGGGGAAGATGCTGACCTTATCGGTAGGGCGGGTGG
GCGAGCGGGCGGGCCAGAGACCGCGTGAGGGGGAGACATTGGGGGTGCGA
CGCTTTGAGGACGACCTCTACATTTTTAATCCCGTGTTTTGACCCCATTT
TTCGTTAGCACCAAAATGCACTTTTGGGTACAGATGGAAACTAAAGAGAA
AAACGGCAAATCAATTTCCCCCCGTTATATTCATGTACGTAGAAATCGTT
CGTTGAAAAAGTAGAAATCATTCCGAGAAACGAATATCTTGAACTTTGTA
TGGTGTTGTTAACAAAACATAACAGTCACTCATACAACACCCCCCTCCCC
CCCCTACTTTTTTCAGTTCGTGGATAAGTAACCCAGTAACTTGCTCACCC
CCCGTTTTTTCTGTGCATGTACTCGTTTGGTGTGGCGTAAGTGATTAATT
GGGTTGTGGTGGGTGCGTTTGTGCTACAAACACACAGGTTGTCTAGGATC
ACGTACAAAACAAATGTAAAGGACACACACAGTACTGATCAAAATGTTCT
CGCCATGGACTTTCCAGTCCGGCAGTCACAACTCTCGAAGCCCTCTGGCT
CGAAGGAGGTTTTACCCAGTATGCGGTAGTGGCTAATAGTTGACAAAGAG
TAACGTTAATCGTTGGAATATACCCTAATAACCCGCGTAGCGCATCCTTC
ACATTAGTATAATATTGGCCGCCTCTGACCTATGCCACTGGCCTACGCTA
CAATACACACACACACAAAATACGAAATAGGCCAACGCCCTTTCCTTGGA
GGGACGACTGCAGCAGACCCTAGAGCGAGAGTCGACCTTGAACACGACGG
TAGACAAGGAGCGGGAGGCGGCTCGGGAAGCGGAAAGGAGGGTGGCAAGG
GCTGAAGGGGAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig57:20459..26620+ >mRNA_H-paniculata_contig57.13245.1 ID=mRNA_H-paniculata_contig57.13245.1|Name=mRNA_H-paniculata_contig57.13245.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig57:20459..26620+ (Halopteris paniculata Hal_grac_a_UBK monoicous) GGGAAAGGTGGCAACGGCGGCGTGGAACGGCTCACGATCCAGGCGTGCTT TAAGGAGGAACGGGAAGCATTCATCCGCGATCTGCAGGGGAAAGGTGGCA ACGGCGGCGTGGAACGGCTCACGATCCAGGCGTGCTTTAAGGAGGAACGG GAAGCATTCATCCGCGATCTGCAGGTTCTCCATCGGCAGCTGGAGGCCAA AGACCGAGATCGCGCGCGACGAGAGCGGGAGTACCAGGAGGCCACGGCCC GAGCGCGGGTCGAGGCCCGGTCTGCCCAGGAGCGAGTGGGTCTACTAAGG AAAGAGGCCGAGGACGCGCTGAGCGCTAAAGGAGCGGCGGAGGCTATGGC GGAAGCGGCGTCCAACAGCTTGGAAAGGCAGACCGCGGCCGTAGAGGTTC TCCATCGGCAGCTGGAGGCCAAAGACCGAGATCGCGCGCGACGAGAGCGG GAGTACCAGGAGGCCACGGCCCGAGCGCGGGTCGAGGCCCGGTCTGCCCA GGAGCGAGTGGGTCTACTAAGGAAAGAGGCCGAGGACGCGCTGAGCGCTA AAGGAGCGGCGGAGGCTATGGCGGAAGCGGCGTCCAACAGCTTGGAAAGG CAGACCGCGGCCGTAGAGAGCCTGCGGGCTCGTTTGCGCCACACCGAGCG CCAGCACAAGGAACAGATGGACGTAACGCGAAGGCAGCAAAGCGCGGCGA CAGAAGAGCCTGCGGGCTCGTTTGCGCCACACCGAGCGCCAGCACAAGGA ACAGATGGACGTAACGCGAAGGCAGCAAAGCGCGGCGACAGAAGATGCCA CTACGGAGCGCCGCCGCCTGGAATCGGCGGCCCTCACTGCCAGAAAGGCT TTGACGGACGAGCGACGGGAGTGGTCCGCCGACAAGGATACCCTTTTGGC CGCGGTGCGGGAGGCGTGCCACAGAGCGGATCTTGCCAGCGGAGAGGCGG AAGAAGCTAAGATGCCACTACGGAGCGCCGCCGCCTGGAATCGGCGGCCC TCACTGCCAGAAAGGCTTTGACGGACGAGCGACGGGAGTGGTCCGCCGAC AAGGATACCCTTTTGGCCGCGGTGCGGGAGGCGTGCCACAGAGCGGATCT TGCCAGCGGAGAGGCGGAAGAAGCTAAGGCCAACGCCCTTTCCTTGGAGG GACGACTGCAGCAGACCCTAGAGCGAGAGTCGACCTTGAACACGACGGTA GACAAGGAGCGGGAGGCGGCTCGGGAAGCGGAAAGGAGGGTGGCAAGGGC TGAAGGGGACGCCAACGCCCTTTCCTTGGAGGGACGACTGCAGCAGACCC TAGAGCGAGAGTCGACCTTGAACACGACGGTAGACAAGGAGCGGGAGGCG GCTCGGGAAGCGGAAAGGAGGGTGGCAAGGGCTGAAGGGGAC back to top
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