mRNA_H-paniculata_contig57.13244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig57.13244.1
Unique NamemRNA_H-paniculata_contig57.13244.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig57.13244.1 vs. uniprot
Match: D7FYF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.270e-11
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   79 ARLGAAVDVIVGHLRRLLLLRAWQKMMPTLTQGELALRLLERQRLRME 222
            ARLGAAVD IVGHLRRL+LL+AW K  P LTQGE+A R+LERQRLR+E
Sbjct:   28 ARLGAAVDAIVGHLRRLVLLQAWAKWQPKLTQGEVATRILERQRLRLE 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57.13244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYF0_ECTSI3.270e-1177.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig57contigH-paniculata_contig57:16224..20408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size523
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig57.13244.1prot_H-paniculata_contig57.13244.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig57 16224..20407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.0926297-CDS-H-paniculata_contig57:16223..162581622930611.0926297-CDS-H-paniculata_contig57:16223..16258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57 16224..16258 +
1691481371.604925-CDS-H-paniculata_contig57:16223..162581691481371.604925-CDS-H-paniculata_contig57:16223..16258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57 16224..16258 +
1622930611.1078978-CDS-H-paniculata_contig57:18406..185451622930611.1078978-CDS-H-paniculata_contig57:18406..18545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57 18407..18545 +
1691481371.6194506-CDS-H-paniculata_contig57:18406..185451691481371.6194506-CDS-H-paniculata_contig57:18406..18545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57 18407..18545 +
1622930611.1204786-CDS-H-paniculata_contig57:19316..194201622930611.1204786-CDS-H-paniculata_contig57:19316..19420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57 19317..19420 +
1691481371.630864-CDS-H-paniculata_contig57:19316..194201691481371.630864-CDS-H-paniculata_contig57:19316..19420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57 19317..19420 +
1622930611.1328173-CDS-H-paniculata_contig57:20163..204071622930611.1328173-CDS-H-paniculata_contig57:20163..20407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57 20164..20407 +
1691481371.6416607-CDS-H-paniculata_contig57:20163..204071691481371.6416607-CDS-H-paniculata_contig57:20163..20407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig57 20164..20407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig57.13244.1

>prot_H-paniculata_contig57.13244.1 ID=prot_H-paniculata_contig57.13244.1|Name=mRNA_H-paniculata_contig57.13244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
VTGVGHVDVGAGRPRPPPRPLPTPGPARLGAAVDVIVGHLRRLLLLRAWQ
KMMPTLTQGELALRLLERQRLRMEESSSCSDPTPRDPDDRRQRHTPGDSY
LAEAASVGASLVDDARSRSRLPRPREGLGDEEDGAIGARSRSTSPAVIAA
IGGSGSRLVRSADAGVVGRLGQVM
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mRNA from alignment at H-paniculata_contig57:16224..20408+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig57.13244.1 ID=mRNA_H-paniculata_contig57.13244.1|Name=mRNA_H-paniculata_contig57.13244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4185bp|location=Sequence derived from alignment at H-paniculata_contig57:16224..20408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACGGGCGTGGGCCATGTGGACGTAGGAGCGGGGTGAGTGTTTATCCC
AAGTTAAATGAATCGGCCCTGTGTTCGGTCGTCGTTTCATGGGTGTGGAC
TCTTCAGTTTTTACAGCAGCATCCTTTTTCTTGTTGATCGATTTTGCCCT
CCGTACACAACAGTCTCTCAATACCGTCTTCACCTATCATCGGCAATGGT
ATCTGCAGCAAGGAACGTTGAAGGTTAATTTCCCCCAGGGTAGTAGAGTC
TCGCAGTAATACCATCTACATTACCAGTAAGTACGACAAAACTGAATCTA
TCGGTCGACCAGAAAGCTGTTTATCGGGTAAGGGAGTCTCTATTAGGCAA
CCCTCCAGCCTTGTACTGTACTAAACTACTCCATTCATGGCACCCACAGG
CAAACACACACACACCCTTGTAGAAGATGCCTTTTACCGCAGTGTCTAAA
CAATCAACGGGCACACAGTACGCCGGGTACACCTAGCGCTATTCGTCCCA
GTATTGTTCATCTTTTAAAAAAGCACAGCAATGAAAGCTGGCGTGCATAT
TTCCACCAACACTACCATCAGACGAATTTTAATGAGCAAGAGCTCCTCGG
GCACAGTGCACACTCAACAATTTGGTCTGCCGACCAGTGAAAGTTCGCCG
CCAACTCTGCCTGCGGGCCAACTATACCGTACTTCGATTCTCAAGCGGTC
TCCGTAATGCCGACTCGATCCAAGCATGCCCTCCCCCCGCCCTCCGTCTG
TCGGGATTGATCGCAACAATGGGAAGTCGATAGTGATCAGGTTCAGCGGC
TGAAACGGGCTCGCAGGCAGCAGCAGACATAACAGCCAAGAAACAGCGCA
GGATGCTTGGCTCTTCACGTTCAATACATTCCTAAAGGTTCTCGACAGGA
CTCAGCGAGAACTTTCTCGGAATTTTCTAACCATTGACCGTGTAGTGTAC
TGCAGCAGCGTTCACAGATAATTTTTTTCTCTTCGTCCGCCGCAGGCGCC
GCGGGAGACCCAGACTTGAGAGAATTGTGTACTTATCTGCTATTTTTCAG
TGTTTCTTTCTGTTTTGTTTCTGTTTTGGACCTTCCGCGTGCAGCGGGAT
TGTGCGGCCCTCTAAGATGTGCGGCAAGCCGCACATGAAGGCTTTCAACA
TCTACGGCGATGCGATCTTTCTAAAAAAAGATGCTGGCCCGCATATATTT
TAGCCCTCCTGTATTTTGAACATTGCAGTGCAGTAATCGACCAAACCCGT
ATCTGTTGCGCCCCGGCTTCGGTGTAAGCGTGCTAGAGTGCAAGCACAGC
GAGACGAGCACCGGTTGCATGTCGTGAACAGCGTTGATAAAGGTGTTTGT
TCTGATGTCCTTTATGTTTAATCTGTCCTGCACAAGTTGCATATCATTTA
GTGTGTCACAACGACTTCTTCTTTGACGCGGTTGCTAACAATCGCGGGCG
GACCTAAAATGTACAGTCGGTATGTACTGCATGCGAGTCCCTCTACGTTC
TCAGCTAGACTAGTGGGGCTCGTTATTAATGTTGGCGTTCTTGTGTGTTT
GAAAATATGTGTAACATTTCTTCAAGTATATAACGACCAAAATAATGATT
AAGGAAATAGTAACATTTGTAAGCATGTTTGTCCCGAGTGGCGAGGGCGC
TACTCCATTTGAGATATTTGCAATACTGCAAGAGCAACGGTACATAGTAA
TGAAATAGAAAAACGCTCAAATAGAGTAATGGTCATCGAGTAAAGCTGTC
ACTGCTATCCCTTCGGACTATATTTCCCAAAAGATGTGCCATAAAGAAAC
GAGAAGTGATCACATGTTTTTAACCGCTGGCCACCAAAAATGAGAAATAG
AGAGTTGGAGCAACCACATGATGACCAGATGAAACCATGAGACTCCGGAG
AAAAGGACTGCACCAAGCAACTCGAGCATCGGAAACAAAACACGCACCAA
ACTAATAAAAAAGCGCCAAGGGAACATATTCCGAGTGAATCGCAAATACT
AGATACACTTATACACTCAGTTCGATGCAGATATTCTCCGGTATGAATAC
GTAATCTCTGGAAAAGGGCGTACCGCCAATGTAGATTCGACAGTAATAAC
TTGGATCCACCTTTTTTCTTCTCTCTCAGACACGCAACGAGCGAAATTAT
GCAGCCTGCGACTGCCGCGACCGCTGTCCGCAGGCGGCCGCGCCCCCCCC
CGAGACCGTTGCCAACCCCTGGCCCCGCTCGACTTGGTGCAGCGGTAGAC
GTTATCGTCGGTCATCTGCGCAGGCTTCTACTCCTGCGGGCTTGGCAAAA
AATGATGCCCACGCTAACTCAGGTGCGGCGAGATAAATTGGTAGAAAGGG
TGCGCGCGCGCGGGGGGCAGGGAAATATATATATATAATTCTATTTGTCT
TGCCATCTGGGGTATTACGTGACAGTTTTGTCGTCTGCATTAACATGCTT
CAATATCTTTTTATATCTAATACTACGTGGTGCTCAATGTTGATCTGGGT
ATGTTCAGGTATGTTTAACGTCCAAGTTTATCTACTTGTATTATGGTTGT
GTGTATTATGTTTCTTTAGATCGAAAAACAAAACGAAAAATCGTGCGTTT
TTCGATACAAACGAACGAGTGGCGTCCTGATTTTTGCGAGCAGATATCAG
AGAACATGTTGTGCTGTCTGAGAGTTGAAGCCATGCGTGTGGTAACATAG
ACATGTTCTTGCTCACTGCTAAAATGTAACAAGCAGGCAGGGCAGTATTA
CCACCTCGAACGGGCTCAAAGGTGGCGAACATAATTTTTACCTCTTACAC
AGTCGAATGTCGCCGTCTAGCTTCTGCTGAGATTTCGTCGTCCCCCCTAC
CCTCGCTCCTCGAGTACGTTTATTTATAGCCCAGTCGCACAGACCAGCGG
TGAAAGGATAGAAGCCCACCTTATTCATTCTCTACTGCTAATCAGTCTAT
CTCGGCGTGATGAAAGCTCTGTGCCGCTTCTCTGCTGTATAGTGGAATTG
TGATCGTATGCGTTAAATTTCCATCCATCGTCATTACCGATATCGGATGG
TTGGACCATACACCGGCTGCCTTGCGTCGCCGTGGAACAACAGGGAGAGT
TAGCGTTGCGGCTACTGGAGCGTCAGCGATTGCGTATGGAAGAGTCATCC
TCCTGCTCGGATCCGACTCCTCGAGATCCGGACGACCGACGACAGCGGTA
AGTAACGGTCCGGCTTTTTTTTGCTGTTTTTTTTTGTTGAGAGCTTGCAT
GGGGAAAGAAGAGCTGTGTATATTTGTGTGTGTACTATAATGCGTATGTG
AGTAAGTGTTCGTATTATGGGCTGTTCTGCTTTTTCGAGTTCAGTCTGGC
GGATAGTTCTGTATGTGGCGGTTGTGCTTGGTGATGGTGGTGGTGGTGGT
GGCGGCGGTGGTATAAGGTTTTGGTTTCATTTTATTTTTACAAACACAAG
CTGAACGTTTGTGCTGGCGGTCAGGAATCCTAAACGTCGACGACAATGAC
ACCACCAATACCAACAACAACATTGGATCGTGACAATAACAACGAACAAG
CTCAATCGAACGGAGTCGTTTTCAGTTCCAAGTACCCCCCAAACCATTCT
TGTCTCTCCAGACAGACCCAATCCCCTTCGCTGGGAATTGCCTACCCTCG
GACCCCATCACACATACGCCCTCATTACAGTAACGAACAACTGCCCTCGT
CCTATCAAATGCCCCAGCTAATCAGCTATCACCTCCACTTAGTGCTTCTA
ATTTCGCTCTAAACTGTGCGGGGCAGCTTTGATTTCAGGTGAGCTGCATA
TTAACTTTAGTCAGCATTAGAGTATCAAGACAAGTACTGTGCTGCACTGA
CTATATACCGTTACAAGTACATAAAAAGCGGGTCGATTTGTTTACGAAGT
TCGTGTGACCCCCCCCCCCCCCCCCCTCTCTGGCACACAGGCACACACCC
GGGGACAGCTACCTAGCAGAGGCGGCGTCGGTGGGCGCTTCACTTGTCGA
CGACGCGCGAAGTCGCTCTAGACTGCCTCGTCCACGCGAGGGATTGGGTG
ATGAGGAAGACGGTGCCATTGGGGCAAGATCTCGTTCCACTTCGCCTGCC
GTAATAGCTGCCATAGGAGGCAGTGGCAGCCGTCTCGTTCGATCTGCGGA
TGCGGGCGTTGTTGGCAGGTTGGGACAGGTGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig57:16224..20408+

>mRNA_H-paniculata_contig57.13244.1 ID=mRNA_H-paniculata_contig57.13244.1|Name=mRNA_H-paniculata_contig57.13244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig57:16224..20408+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACGGGCGTGGGCCATGTGGACGTAGGAGCGGGGTGACGGGCGTGGGC
CATGTGGACGTAGGAGCGGGGCGGCCGCGCCCCCCCCCGAGACCGTTGCC
AACCCCTGGCCCCGCTCGACTTGGTGCAGCGGTAGACGTTATCGTCGGTC
ATCTGCGCAGGCTTCTACTCCTGCGGGCTTGGCAAAAAATGATGCCCACG
CTAACTCAGGCGGCCGCGCCCCCCCCCGAGACCGTTGCCAACCCCTGGCC
CCGCTCGACTTGGTGCAGCGGTAGACGTTATCGTCGGTCATCTGCGCAGG
CTTCTACTCCTGCGGGCTTGGCAAAAAATGATGCCCACGCTAACTCAGGG
AGAGTTAGCGTTGCGGCTACTGGAGCGTCAGCGATTGCGTATGGAAGAGT
CATCCTCCTGCTCGGATCCGACTCCTCGAGATCCGGACGACCGACGACAG
CGGGAGAGTTAGCGTTGCGGCTACTGGAGCGTCAGCGATTGCGTATGGAA
GAGTCATCCTCCTGCTCGGATCCGACTCCTCGAGATCCGGACGACCGACG
ACAGCGGCACACACCCGGGGACAGCTACCTAGCAGAGGCGGCGTCGGTGG
GCGCTTCACTTGTCGACGACGCGCGAAGTCGCTCTAGACTGCCTCGTCCA
CGCGAGGGATTGGGTGATGAGGAAGACGGTGCCATTGGGGCAAGATCTCG
TTCCACTTCGCCTGCCGTAATAGCTGCCATAGGAGGCAGTGGCAGCCGTC
TCGTTCGATCTGCGGATGCGGGCGTTGTTGGCAGGTTGGGACAGGTGATG
GCACACACCCGGGGACAGCTACCTAGCAGAGGCGGCGTCGGTGGGCGCTT
CACTTGTCGACGACGCGCGAAGTCGCTCTAGACTGCCTCGTCCACGCGAG
GGATTGGGTGATGAGGAAGACGGTGCCATTGGGGCAAGATCTCGTTCCAC
TTCGCCTGCCGTAATAGCTGCCATAGGAGGCAGTGGCAGCCGTCTCGTTC
GATCTGCGGATGCGGGCGTTGTTGGCAGGTTGGGACAGGTGATG
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