mRNA_H-paniculata_contig56888.13232.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56888.13232.1
Unique NamemRNA_H-paniculata_contig56888.13232.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig56888.13232.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 5.530e-12
Identity = 49/130 (37.69%), Postives = 64/130 (49.23%), Query Frame = 1 
Query:  265 ARTLATLTVRIPTHVVLLPPRQNESEALREEEREERNWTERLKTWY----------NEGKKAG---------KGRTTKEFRLFFLCGHDNSLAECGLEGKGYRIETPRTWVKKSVPFAKALLVVLNITLK 597
            AR +A L   IP  V +LP R      L E +R    W+  LK W           N  +K           +G  T+E RLFFLCG D SLAECG +G+GY ++    WV+K+ P AK  L + +I LK
Sbjct:  880 AREVAILRWPIPRFVCVLPARDTR---LSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALK 1006
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56888.13232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUH6_ECTSI5.530e-1237.69LRR-GTPase of the ROCO family, incomplete sequence... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56888contigH-paniculata_contig56888:55..1061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D7FU35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size601
Cds size600
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930609.4619958-CDS-H-paniculata_contig56888:54..5881622930609.4619958-CDS-H-paniculata_contig56888:54..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56888 55..588 -
1691481370.8050733-CDS-H-paniculata_contig56888:54..5881691481370.8050733-CDS-H-paniculata_contig56888:54..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56888 55..588 -
1622930609.4738216-CDS-H-paniculata_contig56888:995..10611622930609.4738216-CDS-H-paniculata_contig56888:995..1061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56888 996..1061 -
1691481370.8180249-CDS-H-paniculata_contig56888:995..10611691481370.8180249-CDS-H-paniculata_contig56888:995..1061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56888 996..1061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56888.13232.1prot_H-paniculata_contig56888.13232.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56888 55..1061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56888.13232.1

>prot_H-paniculata_contig56888.13232.1 ID=prot_H-paniculata_contig56888.13232.1|Name=mRNA_H-paniculata_contig56888.13232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
SESQRANLNSCGNDSSSDFQAAVHSDADSEVLEELRKMQSSMPTIEDVKN
VVEESQKTATLEMAARMEEQRKELRRVAPHLSALLRETARTLATLTVRIP
THVVLLPPRQNESEALREEEREERNWTERLKTWYNEGKKAGKGRTTKEFR
LFFLCGHDNSLAECGLEGKGYRIETPRTWVKKSVPFAKALLVVLNITLKS
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mRNA from alignment at H-paniculata_contig56888:55..1061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56888.13232.1 ID=mRNA_H-paniculata_contig56888.13232.1|Name=mRNA_H-paniculata_contig56888.13232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1007bp|location=Sequence derived from alignment at H-paniculata_contig56888:55..1061- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGAGTCTCAGAGAGCCAACCTCAACAGCTGCGGGAATGACAGCAGCTC
AGATTTTCAAGCGGCGGTGAGGAAGTTTCGTACCCAGGTTCTTTGTTTGC
GTATTCGATGTGCTTCTTCGAGTGCGACTGCGAAAGCGCACGGCGAAACC
ATTTGCTGTGGTTATTAGTACCCTGCCAGTGATGAACAAAGGTATGCATG
TCGCCTTGGTGGCGAGGAGACTGTCAAACTCTCTTTTACTAGCAATTCAA
ACAAGCGTGGCACGTTTACCCAATGAAGGCGGGACTTGAACTTTCATGCT
CACTGCCACAATGTTGAACATTTTACCAGACTGAACACGCTTGGTGTGCC
CGTTCAGCACGGTTCAAGTAACTCTTGAAAAAACAAGTCTCTGGTTTCGT
TGCTTGACTGGGTCGTTCGCCCCTCAAGTCATCTTGTCTGACGTCAGCAC
TCTCTTGCTCCTGATTATGACAGGTCCACAGTGATGCAGATAGTGAGGTG
TTGGAGGAGCTGAGAAAAATGCAATCTTCTATGCCCACCATCGAAGATGT
CAAGAACGTTGTCGAGGAGTCGCAAAAGACCGCTACGTTGGAGATGGCGG
CAAGGATGGAAGAGCAGAGGAAGGAGTTGAGACGTGTGGCACCGCATCTG
TCTGCCCTCCTGCGAGAGACGGCGAGGACACTAGCCACCCTGACGGTTCG
CATTCCAACCCATGTGGTGCTCTTGCCTCCGCGGCAAAACGAGTCTGAAG
CGCTGAGAGAGGAAGAAAGAGAGGAACGAAACTGGACGGAGAGATTGAAG
ACGTGGTATAATGAGGGCAAGAAGGCCGGGAAAGGCAGGACAACGAAGGA
GTTTAGACTGTTCTTTCTCTGTGGACACGACAATAGCCTTGCAGAATGTG
GGCTTGAAGGAAAGGGGTACCGGATAGAGACTCCGCGAACGTGGGTGAAA
AAGAGTGTCCCGTTCGCCAAGGCCCTACTGGTCGTCCTAAATATCACGCT
GAAGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig56888:55..1061-

>mRNA_H-paniculata_contig56888.13232.1 ID=mRNA_H-paniculata_contig56888.13232.1|Name=mRNA_H-paniculata_contig56888.13232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig56888:55..1061- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGAGTCTCAGAGAGCCAACCTCAACAGCTGCGGGAATGACAGCAGCTC
AGATTTTCAAGCGGCGTCTGAGTCTCAGAGAGCCAACCTCAACAGCTGCG
GGAATGACAGCAGCTCAGATTTTCAAGCGGCGGTCCACAGTGATGCAGAT
AGTGAGGTGTTGGAGGAGCTGAGAAAAATGCAATCTTCTATGCCCACCAT
CGAAGATGTCAAGAACGTTGTCGAGGAGTCGCAAAAGACCGCTACGTTGG
AGATGGCGGCAAGGATGGAAGAGCAGAGGAAGGAGTTGAGACGTGTGGCA
CCGCATCTGTCTGCCCTCCTGCGAGAGACGGCGAGGACACTAGCCACCCT
GACGGTTCGCATTCCAACCCATGTGGTGCTCTTGCCTCCGCGGCAAAACG
AGTCTGAAGCGCTGAGAGAGGAAGAAAGAGAGGAACGAAACTGGACGGAG
AGATTGAAGACGTGGTATAATGAGGGCAAGAAGGCCGGGAAAGGCAGGAC
AACGAAGGAGTTTAGACTGTTCTTTCTCTGTGGACACGACAATAGCCTTG
CAGAATGTGGGCTTGAAGGAAAGGGGTACCGGATAGAGACTCCGCGAACG
TGGGTGAAAAAGAGTGTCCCGTTCGCCAAGGCCCTACTGGTCGTCCTAAA
TATCACGCTGAAGAGCGTCCACAGTGATGCAGATAGTGAGGTGTTGGAGG
AGCTGAGAAAAATGCAATCTTCTATGCCCACCATCGAAGATGTCAAGAAC
GTTGTCGAGGAGTCGCAAAAGACCGCTACGTTGGAGATGGCGGCAAGGAT
GGAAGAGCAGAGGAAGGAGTTGAGACGTGTGGCACCGCATCTGTCTGCCC
TCCTGCGAGAGACGGCGAGGACACTAGCCACCCTGACGGTTCGCATTCCA
ACCCATGTGGTGCTCTTGCCTCCGCGGCAAAACGAGTCTGAAGCGCTGAG
AGAGGAAGAAAGAGAGGAACGAAACTGGACGGAGAGATTGAAGACGTGGT
ATAATGAGGGCAAGAAGGCCGGGAAAGGCAGGACAACGAAGGAGTTTAGA
CTGTTCTTTCTCTGTGGACACGACAATAGCCTTGCAGAATGTGGGCTTGA
AGGAAAGGGGTACCGGATAGAGACTCCGCGAACGTGGGTGAAAAAGAGTG
TCCCGTTCGCCAAGGCCCTACTGGTCGTCCTAAATATCACGCTGAAGAGC
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