mRNA_H-paniculata_contig56826.13227.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56826.13227.1
Unique NamemRNA_H-paniculata_contig56826.13227.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56826.13227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56826contigH-paniculata_contig56826:435..990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size265
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930608.7342303-CDS-H-paniculata_contig56826:434..5141622930608.7342303-CDS-H-paniculata_contig56826:434..514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56826 435..514 -
1691481370.4340496-CDS-H-paniculata_contig56826:434..5141691481370.4340496-CDS-H-paniculata_contig56826:434..514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56826 435..514 -
1622930608.7526228-CDS-H-paniculata_contig56826:806..9901622930608.7526228-CDS-H-paniculata_contig56826:806..990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56826 807..990 -
1691481370.442767-CDS-H-paniculata_contig56826:806..9901691481370.442767-CDS-H-paniculata_contig56826:806..990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56826 807..990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56826.13227.1prot_H-paniculata_contig56826.13227.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56826 435..990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56826.13227.1

>prot_H-paniculata_contig56826.13227.1 ID=prot_H-paniculata_contig56826.13227.1|Name=mRNA_H-paniculata_contig56826.13227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
SGSSSTPSVPSTVDRPRAGIGADADIRRTAMDVGDELQSSPPVTTTPVAA
SGASMAARSPPEPFSEIPPRLRKYCVRHDTLPGWTAR*
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mRNA from alignment at H-paniculata_contig56826:435..990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56826.13227.1 ID=mRNA_H-paniculata_contig56826.13227.1|Name=mRNA_H-paniculata_contig56826.13227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig56826:435..990- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAGCTCGTCGACTCCGAGTGTCCCGTCGACGGTGGACCGGCCCCG
AGCAGGTATTGGTGCCGACGCCGACATTCGCCGGACGGCGATGGATGTCG
GTGACGAGCTTCAGTCCTCTCCGCCGGTTACCACCACGCCGGTCGCCGCG
AGTGGCGCCTCCATGGCCGCTCGATCTCCGCCCGGTGCGTAGGAGAGCGC
CAGGGTTACTCGCGATCGAAGCGTCAACAACGTGCAGCATATCCCACACA
GAGATGTAATGGCCATGTCGGGCCATGTTCATGTCGTGGCTCGAGGCTTT
CGAGCTCCAACGTGCTTGCATGTATATACACGCAGAAACGTCGCAAGCAC
TCATGATATGCCTCAAGTCGTTACGATCAATAGTGCTACCCCCGCTCCCG
CCCCCCCACCTCGCCGCCCCGCCCCCCCTGTGAACCTCCCGTCTTCGACA
ACTGACACGCCGCCGCCTTTTCTCAGAGCCTTTTTCCGAAATCCCGCCAC
GCCTCCGCAAGTACTGCGTGAGGCATGACACCCTCCCGGGATGGACGGCC
AGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig56826:435..990-

>mRNA_H-paniculata_contig56826.13227.1 ID=mRNA_H-paniculata_contig56826.13227.1|Name=mRNA_H-paniculata_contig56826.13227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig56826:435..990- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAGCTCGTCGACTCCGAGTGTCCCGTCGACGGTGGACCGGCCCCG
AGCAGGTATTGGTGCCGACGCCGACATTCGCCGGACGGCGATGGATGTCG
GTGACGAGCTTCAGTCCTCTCCGCCGGTTACCACCACGCCGGTCGCCGCG
AGTGGCGCCTCCATGGCCGCTCGATCTCCGCCCGAGCGGGAGCTCGTCGA
CTCCGAGTGTCCCGTCGACGGTGGACCGGCCCCGAGCAGGTATTGGTGCC
GACGCCGACATTCGCCGGACGGCGATGGATGTCGGTGACGAGCTTCAGTC
CTCTCCGCCGGTTACCACCACGCCGGTCGCCGCGAGTGGCGCCTCCATGG
CCGCTCGATCTCCGCCCGAGCCTTTTTCCGAAATCCCGCCACGCCTCCGC
AAGTACTGCGTGAGGCATGACACCCTCCCGGGATGGACGGCCAGGTAAAG
CCTTTTTCCGAAATCCCGCCACGCCTCCGCAAGTACTGCGTGAGGCATGA
CACCCTCCCGGGATGGACGGCCAGGTAA
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