mRNA_H-paniculata_contig5682.13226.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5682.13226.1
Unique NamemRNA_H-paniculata_contig5682.13226.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5682.13226.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.980e-30
Identity = 143/310 (46.13%), Postives = 161/310 (51.94%), Query Frame = 1 
Query:  346 DNEELPACLADILDSFFGG--------------------------------SSSGVAAP-RSPSTITGIDVEVGRAAFALLGVRDLDDIKHLSGAGIVAPESPESYCHLSGEVVAAAAAAVLSAAARGTAPADGLGLXXXXXXXXXXXXXXXXXXXXXXXSGDSFPSPGSSPSVVTFNSLGSRIELALT---------EGFGKEDSVAANAANKATRSEFGFAAGTGAASVKPVG--MGXXXXXPPFTPLXXXXXXXXXXXXXXXDDDYGGSSDAHNALKTVRITGTAEEVQLAEYLIRVRTAGRYMVAA 1143
            D+ ELP+CL  ILDSF GG                                +++G A P RSPSTITGI++EVGR+AFA LG R LDDIK LSGAGI APESPE YCHLS E +AA  A V S+AARG AP DG+GL  XXXXXXXXXXXXXXXXXXXXX                                      EGFG ++ V  N    A  +    AA TG  S   +G  M XXXXX                   XX       +   N+LKTV+ITGTAEEVQLAEYLIRVRT G  M AA
Sbjct:  518 DDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGNXGSVGNSNANEKNGNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYCHLSDEALAAMGA-VYSSAARGNAPCDGVGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPFEGFGLKEGVRGNMGGGAATTPGAIAAVTGGVSRLGLGTTMSXXXXXXXXVSPSLASAVGQVSGGLXXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAA 826
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BLAST of mRNA_H-paniculata_contig5682.13226.1 vs. uniprot
Match: D8LKQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ3_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.660e-28
Identity = 142/299 (47.49%), Postives = 158/299 (52.84%), Query Frame = 1 
Query:  346 DNEELPACLADILDSFFGG-------------SSSG----------------VAAP--RSPSTITGIDVEVGRAAFALLGVRDLDDIKHLSGAGIVAPESPESYCHLSGEVVAAAAAAVLSAAARGTAPADGLGLXXXXXXXXXXXXXXXXXXXXXXXSGDSFPSPGSSPSVVTFNSLGSRIELALTEGFGKEDSVAANAANKATRSEFGFAAGTGAAS--VKPVGMGXXXXXPPFTPLXXXXXXXXXXXXXXXDDDYGGSSDAHNALKTVRITGTAEEVQLAEYLIRVRTAGRYMVAA 1143
            D+ ELP+CL  ILDSF GG             S SG                 AAP  RSPSTITGI++EVGR+AFA LG R LDDIK LSGAGI APESPE Y HLS E  AAA  AV S+AARG AP DG+GL    XXXXXXXXXXXXXXXXXXX                             EGF   + V  N ++ A  +    AA TG  S  V      XXXXX   +P              XX      ++   N+LKTV+ITGTAEEVQLAEYLIRV T G  M AA
Sbjct:  123 DDGELPSCLVGILDSFLGGGGKSYVSDGNSIRSGSGGXXXXXXXXXXXXXXXXAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYYHLSDEA-AAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSPF-EGFRLREGVRGNMSDGAATTPGAIAAVTGGVSRLVLDTTNSXXXXXNGVSPSLASAVGHVSGGLAXXXXXXXXTA-GPNSLKTVKITGTAEEVQLAEYLIRVSTTGGNMAAA 418
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5682.13226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8U0_9PHAE4.980e-3046.13KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LKQ3_ECTSI1.660e-2847.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5682contigH-paniculata_contig5682:8090..9499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004400.1
Exons3
Model size1146
Cds size1137
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5682.13226.1prot_H-paniculata_contig5682.13226.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5682 8099..9499 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930608.4948597-UTR-H-paniculata_contig5682:8089..80981622930608.4948597-UTR-H-paniculata_contig5682:8089..8098Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5682 8090..8098 +
1691481370.3964164-UTR-H-paniculata_contig5682:8089..80981691481370.3964164-UTR-H-paniculata_contig5682:8089..8098Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5682 8090..8098 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930608.5121956-CDS-H-paniculata_contig5682:8098..87051622930608.5121956-CDS-H-paniculata_contig5682:8098..8705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5682 8099..8705 +
1691481370.4100795-CDS-H-paniculata_contig5682:8098..87051691481370.4100795-CDS-H-paniculata_contig5682:8098..8705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5682 8099..8705 +
1622930608.5255399-CDS-H-paniculata_contig5682:8771..90101622930608.5255399-CDS-H-paniculata_contig5682:8771..9010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5682 8772..9010 +
1691481370.4182246-CDS-H-paniculata_contig5682:8771..90101691481370.4182246-CDS-H-paniculata_contig5682:8771..9010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5682 8772..9010 +
1622930608.5398226-CDS-H-paniculata_contig5682:9208..94991622930608.5398226-CDS-H-paniculata_contig5682:9208..9499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5682 9209..9499 +
1691481370.426102-CDS-H-paniculata_contig5682:9208..94991691481370.426102-CDS-H-paniculata_contig5682:9208..9499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5682 9209..9499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5682.13226.1

>prot_H-paniculata_contig5682.13226.1 ID=prot_H-paniculata_contig5682.13226.1|Name=mRNA_H-paniculata_contig5682.13226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=379bp
MSRSGSGSGRLSASSSPDLASSSASGSPGSGSLGSAEGLVGSAAADAPAI
ITQLSLGTSAASSTGGGGAVPSIIEATRTPNGATGSSGSGSGSGSGGDGG
GAHGVLEGSSYIDNEELPACLADILDSFFGGSSSGVAAPRSPSTITGIDV
EVGRAAFALLGVRDLDDIKHLSGAGIVAPESPESYCHLSGEVVAAAAAAV
LSAAARGTAPADGLGLAAAESNAVASAAAAAAAATTTTTSGDSFPSPGSS
PSVVTFNSLGSRIELALTEGFGKEDSVAANAANKATRSEFGFAAGTGAAS
VKPVGMGTGNGSPPFTPLPGYGVGMGVGGGGGGDDDYGGSSDAHNALKTV
RITGTAEEVQLAEYLIRVRTAGRYMVAA*
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mRNA from alignment at H-paniculata_contig5682:8090..9499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5682.13226.1 ID=mRNA_H-paniculata_contig5682.13226.1|Name=mRNA_H-paniculata_contig5682.13226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1410bp|location=Sequence derived from alignment at H-paniculata_contig5682:8090..9499+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGCGGAATGAGCCGGAGCGGAAGTGGTAGTGGAAGGCTGAGCGCATC
CAGCAGCCCGGACCTTGCATCGTCGTCTGCCAGCGGCTCCCCGGGCAGCG
GCAGTCTAGGCTCTGCCGAGGGGCTCGTCGGAAGCGCAGCGGCTGACGCC
CCGGCTATAATAACCCAGCTCTCTCTAGGTACCAGTGCTGCTTCGTCTAC
CGGTGGAGGCGGCGCCGTGCCATCCATTATCGAGGCCACCAGAACTCCAA
ACGGTGCGACAGGCAGCAGCGGCAGTGGCAGTGGCAGCGGCAGCGGCGGC
GATGGCGGTGGGGCGCATGGTGTTCTCGAGGGTAGCAGTTATATCGACAA
TGAGGAACTTCCGGCATGCCTGGCTGACATATTAGACTCGTTTTTTGGCG
GAAGCTCCAGCGGCGTCGCCGCACCCCGCAGCCCTTCTACCATAACCGGT
ATCGACGTGGAGGTAGGACGCGCGGCGTTCGCCTTGCTGGGCGTTCGGGA
CCTCGACGACATTAAACACCTCTCCGGCGCCGGCATCGTCGCCCCGGAGT
CCCCGGAGAGTTACTGCCACCTGTCTGGCGAGGTCGTCGCGGCGGCGGCG
GCGGCCGTGCTCTCGGGTCCCCATGGTACTAACAATAACAATAACAGTGT
TAACGGAGCGGCAGCAGTCGCTGCTGGACGAGCCGCTGCTCGAGGAACAG
CCCCAGCCGACGGACTGGGTCTCGCCGCCGCGGAGAGCAACGCCGTTGCC
AGCGCTGCAGCAGCCGCCGCCGCCGCCACCACCACCACCACTTCAGGAGA
TTCTTTCCCTAGTCCTGGGTCTTCGCCATCCGTCGTGACTTTCAACTCGC
TGGGCAGCAGGATAGAGCTCGCTCTGACAGAGGGGTTCGGCAAGGAAGAT
AGCGTGGCGGCCAACGCCGCTGTGCAGATGATGACGGCTGGCTCGACCGT
TGCGAATCGTTCTTCCTCTCGTTCTTCCTCTTCTCCTTCATCTTTTTCTC
CTCCTATGCGGACGGCCGGACGCGATGGAGGCGGCGCCGGGTGCGGGGTA
TTCGGAATGCTAGGCAGCGCGAACCCACGGTCATTCCGACACGACACTAC
GTCCATGGCTCCGACTGAGAACAAAGCGACCAGAAGCGAGTTTGGCTTCG
CGGCCGGCACCGGTGCTGCTTCGGTCAAGCCCGTTGGCATGGGCACGGGC
AACGGTTCCCCTCCATTTACTCCTCTCCCCGGATACGGTGTGGGTATGGG
TGTTGGTGGCGGCGGTGGTGGCGACGACGACTACGGAGGTAGTTCGGATG
CGCACAATGCCCTCAAGACTGTGAGGATCACGGGTACCGCGGAGGAGGTG
CAGCTGGCCGAGTACCTGATCCGCGTGCGCACCGCTGGAAGGTACATGGT
GGCTGCTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5682:8090..9499+

>mRNA_H-paniculata_contig5682.13226.1 ID=mRNA_H-paniculata_contig5682.13226.1|Name=mRNA_H-paniculata_contig5682.13226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2274bp|location=Sequence derived from alignment at H-paniculata_contig5682:8090..9499+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCCGGAGCGGAAGTGGTAGTGGAAGGCTGAGCGCATCCAGCAGCCC
GGACCTTGCATCGTCGTCTGCCAGCGGCTCCCCGGGCAGCGGCAGTCTAG
GCTCTGCCGAGGGGCTCGTCGGAAGCGCAGCGGCTGACGCCCCGGCTATA
ATAACCCAGCTCTCTCTAGGTACCAGTGCTGCTTCGTCTACCGGTGGAGG
CGGCGCCGTGCCATCCATTATCGAGGCCACCAGAACTCCAAACGGTGCGA
CAGGCAGCAGCGGCAGTGGCAGTGGCAGCGGCAGCGGCGGCGATGGCGGT
GGGGCGCATGGTGTTCTCGAGGGTAGCAGTTATATCGACAATGAGGAACT
TCCGGCATGCCTGGCTGACATATTAGACTCGTTTTTTGGCGGAAGCTCCA
GCGGCGTCGCCGCACCCCGCAGCCCTTCTACCATAACCGGTATCGACGTG
GAGGTAGGACGCGCGGCGTTCGCCTTGCTGGGCGTTCGGGACCTCGACGA
CATTAAACACCTCTCCGGCGCCGGCATCGTCGCCCCGGAGTCCCCGGAGA
GTTACTGCCACCTGTCTGGCGAGGTCGTCGCGGCGGCGGCGGCGGCCGTG
CTCTCGGATGAGCCGGAGCGGAAGTGGTAGTGGAAGGCTGAGCGCATCCA
GCAGCCCGGACCTTGCATCGTCGTCTGCCAGCGGCTCCCCGGGCAGCGGC
AGTCTAGGCTCTGCCGAGGGGCTCGTCGGAAGCGCAGCGGCTGACGCCCC
GGCTATAATAACCCAGCTCTCTCTAGGTACCAGTGCTGCTTCGTCTACCG
GTGGAGGCGGCGCCGTGCCATCCATTATCGAGGCCACCAGAACTCCAAAC
GGTGCGACAGGCAGCAGCGGCAGTGGCAGTGGCAGCGGCAGCGGCGGCGA
TGGCGGTGGGGCGCATGGTGTTCTCGAGGGTAGCAGTTATATCGACAATG
AGGAACTTCCGGCATGCCTGGCTGACATATTAGACTCGTTTTTTGGCGGA
AGCTCCAGCGGCGTCGCCGCACCCCGCAGCCCTTCTACCATAACCGGTAT
CGACGTGGAGGTAGGACGCGCGGCGTTCGCCTTGCTGGGCGTTCGGGACC
TCGACGACATTAAACACCTCTCCGGCGCCGGCATCGTCGCCCCGGAGTCC
CCGGAGAGTTACTGCCACCTGTCTGGCGAGGTCGTCGCGGCGGCGGCGGC
GGCCGTGCTCTCGGCCGCTGCTCGAGGAACAGCCCCAGCCGACGGACTGG
GTCTCGCCGCCGCGGAGAGCAACGCCGTTGCCAGCGCTGCAGCAGCCGCC
GCCGCCGCCACCACCACCACCACTTCAGGAGATTCTTTCCCTAGTCCTGG
GTCTTCGCCATCCGTCGTGACTTTCAACTCGCTGGGCAGCAGGATAGAGC
TCGCTCTGACAGAGGGGTTCGGCAAGGAAGATAGCGTGGCGGCCAACGCC
GCTCCGCTGCTCGAGGAACAGCCCCAGCCGACGGACTGGGTCTCGCCGCC
GCGGAGAGCAACGCCGTTGCCAGCGCTGCAGCAGCCGCCGCCGCCGCCAC
CACCACCACCACTTCAGGAGATTCTTTCCCTAGTCCTGGGTCTTCGCCAT
CCGTCGTGACTTTCAACTCGCTGGGCAGCAGGATAGAGCTCGCTCTGACA
GAGGGGTTCGGCAAGGAAGATAGCGTGGCGGCCAACGCCGCTAACAAAGC
GACCAGAAGCGAGTTTGGCTTCGCGGCCGGCACCGGTGCTGCTTCGGTCA
AGCCCGTTGGCATGGGCACGGGCAACGGTTCCCCTCCATTTACTCCTCTC
CCCGGATACGGTGTGGGTATGGGTGTTGGTGGCGGCGGTGGTGGCGACGA
CGACTACGGAGGTAGTTCGGATGCGCACAATGCCCTCAAGACTGTGAGGA
TCACGGGTACCGCGGAGGAGGTGCAGCTGGCCGAGTACCTGATCCGCGTG
CGCACCGCTGGAAGGTACATGGTGGCTGCTTAGAACAAAGCGACCAGAAG
CGAGTTTGGCTTCGCGGCCGGCACCGGTGCTGCTTCGGTCAAGCCCGTTG
GCATGGGCACGGGCAACGGTTCCCCTCCATTTACTCCTCTCCCCGGATAC
GGTGTGGGTATGGGTGTTGGTGGCGGCGGTGGTGGCGACGACGACTACGG
AGGTAGTTCGGATGCGCACAATGCCCTCAAGACTGTGAGGATCACGGGTA
CCGCGGAGGAGGTGCAGCTGGCCGAGTACCTGATCCGCGTGCGCACCGCT
GGAAGGTACATGGTGGCTGCTTAG
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