mRNA_H-paniculata_contig568.13219.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig568.13219.1
Unique NamemRNA_H-paniculata_contig568.13219.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig568.13219.1 vs. uniprot
Match: D8LIX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIX3_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.280e-38
Identity = 74/106 (69.81%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:  118 IERD-ESTASLVQSTGAAAAAGAPADDGGYGRDWDKLEMHRAVYANDLAQLRYFISERPRGLKQIDHHANTPLLLALKLARTEMAWLMIRAGADLDVPSDGSFQLL 432
            ++RD +S+ S+VQ+TGA        DDGGYG DWDKLEMHRAVYA+D   LR F+  RPRGLKQ DHH NTPLLLALKL RTEMAWLM+RAGA+LD+PSDGSF LL
Sbjct:  715 LKRDSDSSRSVVQNTGAXXXXXXXXDDGGYGSDWDKLEMHRAVYASDKPGLRLFMQARPRGLKQADHHGNTPLLLALKLGRTEMAWLMVRAGAELDLPSDGSFHLL 820
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BLAST of mRNA_H-paniculata_contig568.13219.1 vs. uniprot
Match: A0A6H5L593_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L593_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 7.330e-37
Identity = 76/121 (62.81%), Postives = 88/121 (72.73%), Query Frame = 1 
Query:   76 ATEGGGVKVGKGIV-IERD-ESTASLVQSTGAAAAAGAPADDGGYGRDWDKLEMHRAVYANDLAQLRYFISERPRGLKQIDHHANTPLLLALKLARTEMAWLMIRAGADLDVPSDGSFQLL 432
            A EGG      G V ++RD +S+ S+VQ+TG           GGYG DWDKLEMHRAVYA+D   LR F+  RP+GLKQ DHH NTPLLLALKL RTEMAWLM+RAGA+LD+PSDGSF LL
Sbjct:  942 AEEGGAASAAPGGVGLKRDSDSSRSVVQNTGXXXXXXXXXXXGGYGSDWDKLEMHRAVYASDKPGLRLFMQARPQGLKQADHHGNTPLLLALKLGRTEMAWLMVRAGAELDLPSDGSFHLL 1062
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BLAST of mRNA_H-paniculata_contig568.13219.1 vs. uniprot
Match: A0A6H5KD68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD68_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.530e-5
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  289 PRGLKQIDHHANTPLLLALKLARTEMAWLMIRAGADLDVPSDGSFQLL 432
            P G+ ++DHH NTPLLLAL+L R E A  ++ AGA++D+ S   + L+
Sbjct: 1053 PGGMDEVDHHGNTPLLLALQLGRLECANALLEAGANVDIKSGRRYHLM 1100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig568.13219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIX3_ECTSI1.280e-3869.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L593_9PHAE7.330e-3762.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD68_9PHAE1.530e-547.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig568contigH-paniculata_contig568:6461..7941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue2.6e-34
Seed eggNOG ortholog2880.D8LIX3
KEGG koko:K21437
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006621,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0010941,GO:0012505,GO:0019222,GO:0031323,GO:0032507,GO:0033036,GO:0033365,GO:0034613,GO:0035437,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045185,GO:0048471,GO:0050789,GO:0050794,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0060255,GO:0065007,GO:0065008,GO:0070727,GO:0070972,GO:0072595,GO:2000209
EggNOG free text desc.protein retention in ER lumen
EggNOG OGsKOG0522@1,KOG0522@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size441
Cds size441
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930608.0111556-CDS-H-paniculata_contig568:6460..66731622930608.0111556-CDS-H-paniculata_contig568:6460..6673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 6461..6673 -
1691481370.1457388-CDS-H-paniculata_contig568:6460..66731691481370.1457388-CDS-H-paniculata_contig568:6460..6673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 6461..6673 -
1622930608.0248103-CDS-H-paniculata_contig568:7713..79411622930608.0248103-CDS-H-paniculata_contig568:7713..7941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 7714..7941 -
1691481370.155116-CDS-H-paniculata_contig568:7713..79411691481370.155116-CDS-H-paniculata_contig568:7713..7941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 7714..7941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig568.13219.1prot_H-paniculata_contig568.13219.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig568 6461..7941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig568.13219.1

>prot_H-paniculata_contig568.13219.1 ID=prot_H-paniculata_contig568.13219.1|Name=mRNA_H-paniculata_contig568.13219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MPTKGTREFGRERSGEARSRRGEGSATEGGGVKVGKGIVIERDESTASLV
QSTGAAAAAGAPADDGGYGRDWDKLEMHRAVYANDLAQLRYFISERPRGL
KQIDHHANTPLLLALKLARTEMAWLMIRAGADLDVPSDGSFQLLVS*
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mRNA from alignment at H-paniculata_contig568:6461..7941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig568.13219.1 ID=mRNA_H-paniculata_contig568.13219.1|Name=mRNA_H-paniculata_contig568.13219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1481bp|location=Sequence derived from alignment at H-paniculata_contig568:6461..7941- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGACGAAGGGTACCCGGGAGTTTGGACGGGAGCGGTCGGGGGAAGC
AAGGAGCCGGAGGGGAGAGGGATCTGCGACAGAGGGCGGCGGAGTTAAGG
TTGGGAAAGGCATAGTGATCGAGAGGGACGAGTCGACTGCGAGCCTGGTG
CAGAGCACAGGAGCGGCCGCTGCTGCCGGGGCGCCGGCGGACGACGGCGG
ATACGGTCGGGACTGGGACAAGCTTGAGGTGCGTCTGGTGTGTGTGTTTG
TTTTTCGACTCTTGCGACGACTGTGAATCTGTTAGTCTGTTGACGGGAAG
GGTGCGGATGGGAGGGGGGGGAGAGGGGCAGGAGGGGAGAAGTCTTAATA
ACGAGGCAACCCACTGTGCACACTTGGTAGCTCTATAAAAGTCATAAGAG
TAACTCTACTATACCTATGTTGAGGTCATACAGCTGACTTCAATTTAAAT
CTCAGCTCTGTACACTTCGTAATAAAACAAGGTCAAATGACGGCAGGGGG
GGGGGTGGGGGGTTTCTGATGCTGTTGATAAAACCATATATATTGACTTT
CATACAGTAGCTCCATTGGAGTGTACCCATTTTGAAGTTATTTAACTGCC
TTTAAAACTCAGTTATGTACAACTATCAGCAAAATTAGATGAGTAACGGG
CGCTGATGCTGGAAGCTAGTATCATGCAAAGGCTGACGATGGTTGTGACC
TTGTCGGAGGTTTCGATTATGAAAAAAACATGACGAATGGTTGCTGTGAG
CTGCAGCATGCTCCAAGGCAGGCCATAGCTACGCCAATAGGGCGTGAATC
CTCGAGAGGAAGCACTAGAATAAATAATGGAAGCTGTTCTGAGAGGAACG
GCATCATCGTGGTCATGTCCATGCTGATTCTAAAGGGCACAGTCTGTACG
TACGTCTCAGAGGTTGTTTGTTCTGTCAACATTAAGCTGTTTTATTTCTA
TTTGCCTTCCTTAGTTCCGAGGAGCAGGTGCGTGCAATACTCTGCTTCAT
GTATCCAGTTTACTGTACTATAAATATCCCCCCCCCCCGCCGCCGCCGCC
GCCGCCGGGTAGTTTTGAGTCATAGCAAGTTGGTCGTTTCGGCACAGTGG
TTGGGAGCGGGGACAAATGTATCGGTTAATGCCAGCTTTACTGTACTGTC
TGTAGAGGAGGAGACCTCACCTCGTCGTCCCGAGGACGTGTGATCAATGA
TCCAACAACTATGGTATCCAAAGCATGGGTATGCCTCCCCCACCTCGCCA
TGTACCCGCGTCCTGCAGATGCACCGCGCCGTGTACGCTAACGACCTTGC
TCAGCTCCGCTACTTCATATCGGAGAGGCCCCGGGGCTTGAAGCAGATAG
ACCACCATGCGAACACCCCGCTGCTTTTGGCTCTCAAGCTCGCGCGCACC
GAGATGGCGTGGCTCATGATTCGAGCTGGGGCCGACTTGGATGTGCCGAG
CGATGGGAGCTTCCAGCTCCTCGTAAGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig568:6461..7941-

>mRNA_H-paniculata_contig568.13219.1 ID=mRNA_H-paniculata_contig568.13219.1|Name=mRNA_H-paniculata_contig568.13219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig568:6461..7941- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGACGAAGGGTACCCGGGAGTTTGGACGGGAGCGGTCGGGGGAAGC
AAGGAGCCGGAGGGGAGAGGGATCTGCGACAGAGGGCGGCGGAGTTAAGG
TTGGGAAAGGCATAGTGATCGAGAGGGACGAGTCGACTGCGAGCCTGGTG
CAGAGCACAGGAGCGGCCGCTGCTGCCGGGGCGCCGGCGGACGACGGCGG
ATACGGTCGGGACTGGGACAAGCTTGAGATGCCGACGAAGGGTACCCGGG
AGTTTGGACGGGAGCGGTCGGGGGAAGCAAGGAGCCGGAGGGGAGAGGGA
TCTGCGACAGAGGGCGGCGGAGTTAAGGTTGGGAAAGGCATAGTGATCGA
GAGGGACGAGTCGACTGCGAGCCTGGTGCAGAGCACAGGAGCGGCCGCTG
CTGCCGGGGCGCCGGCGGACGACGGCGGATACGGTCGGGACTGGGACAAG
CTTGAGATGCACCGCGCCGTGTACGCTAACGACCTTGCTCAGCTCCGCTA
CTTCATATCGGAGAGGCCCCGGGGCTTGAAGCAGATAGACCACCATGCGA
ACACCCCGCTGCTTTTGGCTCTCAAGCTCGCGCGCACCGAGATGGCGTGG
CTCATGATTCGAGCTGGGGCCGACTTGGATGTGCCGAGCGATGGGAGCTT
CCAGCTCCTCGTAAGTTGAATGCACCGCGCCGTGTACGCTAACGACCTTG
CTCAGCTCCGCTACTTCATATCGGAGAGGCCCCGGGGCTTGAAGCAGATA
GACCACCATGCGAACACCCCGCTGCTTTTGGCTCTCAAGCTCGCGCGCAC
CGAGATGGCGTGGCTCATGATTCGAGCTGGGGCCGACTTGGATGTGCCGA
GCGATGGGAGCTTCCAGCTCCTCGTAAGTTGA
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