mRNA_H-paniculata_contig568.13221.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig568.13221.1
Unique NamemRNA_H-paniculata_contig568.13221.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig568.13221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig568contigH-paniculata_contig568:16170..21750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size360
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig568.13221.1prot_H-paniculata_contig568.13221.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig568 16170..21750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.9446366-CDS-H-paniculata_contig568:16169..161941622930607.9446366-CDS-H-paniculata_contig568:16169..16194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 16170..16194 -
1691481370.1198-CDS-H-paniculata_contig568:16169..161941691481370.1198-CDS-H-paniculata_contig568:16169..16194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 16170..16194 -
1622930607.9610476-CDS-H-paniculata_contig568:17719..178061622930607.9610476-CDS-H-paniculata_contig568:17719..17806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 17720..17806 -
1691481370.1297195-CDS-H-paniculata_contig568:17719..178061691481370.1297195-CDS-H-paniculata_contig568:17719..17806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 17720..17806 -
1622930607.9724908-CDS-H-paniculata_contig568:21502..217501622930607.9724908-CDS-H-paniculata_contig568:21502..21750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 21503..21750 -
1691481370.1374583-CDS-H-paniculata_contig568:21502..217501691481370.1374583-CDS-H-paniculata_contig568:21502..21750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig568 21503..21750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig568.13221.1

>prot_H-paniculata_contig568.13221.1 ID=prot_H-paniculata_contig568.13221.1|Name=mRNA_H-paniculata_contig568.13221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MSVQFGGLRRSISLATSTTTTATPSTISAPDCQHHCHHSIPIPNEAPGQK
GSGDWLNQPGTIRRGLVKPVHFGIDTGAPSPTRVDDEDMPPHPTKLGERL
PGINQRPLTADSQPRLRVIP
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mRNA from alignment at H-paniculata_contig568:16170..21750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig568.13221.1 ID=mRNA_H-paniculata_contig568.13221.1|Name=mRNA_H-paniculata_contig568.13221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5581bp|location=Sequence derived from alignment at H-paniculata_contig568:16170..21750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGTTCAGTTTGGCGGGCTGCGGCGGTCAATCTCTCTAGCGACTAG
TACAACGACTACTGCAACACCATCAACGATATCGGCACCAGATTGCCAGC
ATCACTGCCACCATAGTATTCCAATTCCTAATGAAGCACCGGGTCAGAAG
GGCTCAGGAGACTGGCTAAATCAGCCGGGGACCATCAGACGGGGGCTTGT
CAAACCCGTCCACTTTGGAATTGACACCGGTGCACCCTCTCCAACCCGGT
GAGCTGTCGCGGTCGTGGTGCTATCTGCAATATAACCTAAATACAGACCA
TGTTGTGCTTCGTCCGATATGATGGGTTTGCTAGCGTTCTTTTGTGTTCT
CTCTTTATACTGGACCTCCAGCACAGCAAGCAGAGAGAGAGACAGAGACA
GACACAGGCCAGTTCAAACAAAGTCAACCTGATGTTGCAGACGTGGAACG
TTTGGAGTCATACAGTTGCGTACTTGTGCATACAAATTTTACTAAAAGAA
GGACATTACTTGACCGGACAAAGAACAGAGGTTGAGGGTCCCAAAGAAGC
AAACTGAATCAATTACGATAGGTCTGTGGTCTGCCTGCAGTCGACATTTT
TGATTGGCACAGCAGTTGCCCCGCTATGTTGTCCTACGCTGTCTACTTGT
TACAGCCTTGCTTTATGACATGATTTGATACGTATTTGCACGATAAAATC
TATCCAAGAAGGGCAAACGTTACCAGAGGCAGTCACGACGCGCCGATACC
AAGCTGACTACAAATAAAGTGTACCGCTGGAAATACATGGCTTTTTTCCA
GGAGAGACGTTAGGGGTCTGCTGCAGTGAATTGCAGGATCGCGAAAGACA
CAGCAGTTAACTTAACGACCGTACACATGTATTTATTTGCACATGAAAAT
ATAGGTGAAAGGTTCGGGTTGTATATCTGTATTTGCATCATAGGTGAAAG
ATTTGGATTTCACACAGGAGTTGCACCGCTATGTTTACTTTGTGTGGAAG
GTGCACTTGGCAGGGATGGGTGTCCACCAGACAAGAACAGTAGTATCTAC
TATGTATGTTGCACGCCACAAATCTTTCGATAAGGTGAACAGCACACCAG
AAACGATAAATGCACCAGAGTTGGATTCACACCTATGGCACCAGATTCCA
ATATACCAGTTCTTCACGTTGCCCGCTAGTGGCACTATCTCCGGCCGAAC
GACTGTCTCTAGGTCAGATCCAACTCTGAGACAACGCACTCTTTATCCCT
TCTGCTGGGGTCAGGGTGAGGGTTGGAGTTGGGTTGAGTTGGGTTGGTTT
ACGTTTAGACTTGGTAGCCAAAAGCATTGGTACACTGAGGCTTAGGCAAG
GAAGTAAAGACAGGCCCGCGGCCGGGTTGTCTCGAGAGCAAAAAAAGAAC
ACTCGCCAAATCGATGACGACTAAGTTATCTATCTTGGGGCAAGAATTGA
TTTTGGTGTCTTGACATAGAAACCGAATTTGGTACCGGAGACCTCGAGGT
TTGGAGTAACTGTTGTTGCAAATGGTTGAGGTCAGCAAACTTGAGAAATA
ATGGGAGAATGACACACGACACAATCATTGTCCTGCGCTCCTCTTATCAC
ACCTTGCAATTCACCGCCTTTGGGCTGCCCTGCTTTTGGCCGCTTGGTCG
ATACGAAGGGGATTTGTCGTGCCTTGATCGCCGGGTCTTCCAATCACAGG
CATGGTTGTTTTTCACTTTCTGTGTCCAACGACCAAATCCCGTATCTGGA
TTGGAAGCTGTTGTCTATTTCTCTCGACAGATTTTTGTAGGATCGATTTT
TTTGCCATCCTGAAAGTGTGACCAACTGCGACATACTACCACACCAGTTC
TCCAACCAACAAGAGGCCCCCCATCCATTTTATTATTCTTCCTCTAGAAA
TTTGATGGCAATCGTTTTTTCTCTGCCAGATAAGACACGACCGGACAGAA
GGTAAGAATTTTTTTTTGTCAGTGTGGGGGTAACGAAGGAGAGAACAAAA
CCTTTAAGAGATCCCCAAGGATATACGCTATTTACCTTGCTGCGGTACCA
ATTGCCCCCATCTGTTGCCCGATGTTCCTCCAGCTATGTATCCCTTTCGT
TTTCCCTTGAGTTTCGTGTTCATCGGTTGGGTCTCGGCACTGTTTAATAC
AGAAAATTCTATCTACAGGTGACTGCAGCACACCTCGAGGTGTATCTTAA
CCCAGGCTATTCTTTGTCTGCCTCGCTTGGTGGGCCTTTTGTTGTCGTTT
ATTCATTCTGAACACTGTATCTGCAGCGTTCGTCGATGTGATCTAGCCCG
ATGGAAATCCGAGAAGGCACCCACGCTCGTGCGCAAATGCACGCATGTGT
GTGATCAAGCCTCCAGCTAGTAGTGCTGTGTGCAGCACAGCTTGTTAACC
TGTCGCTTTGCCGAGTACGCCTTGCATGCATTATGAAACGTTGATGACAT
CACGTGCTGGAAAGCCTTCTGCTACCGGGCAGACAGGTGTAACTATATAG
AGTGATACTGCCTGTCCTGTTTGCTTTCTGTACTCGAGATATTTTGTTGA
GATGATGATTCAACAGCTTCTACATGATCCATCAACTAAATAAAACATAC
CTGATGCGAAATGCGTGTGCAACAAGAGTTATGGTATTAGTCGCGCGCCC
ACGGACCTACGCCCGAACGGGTAGGGTAGCTCGTGAACTGAGCATGACTG
GAAATCTAGTCAGAGGTCTTTTAGTGGGTACAACCTTCACACTGCCTACT
TGGTTCGGCCAAACAGGGGTGAGGCCTACTCCGCAGAGGAATAAATAACT
CTGTTCTGTTTAAGGAAAGGTAGAAGTACTTGGGTAGAAATACTTAAGTT
TGGAAACATCGGATAAAGGCTTTTGCCTTAGCCTTCCGGGGGTTAAAAAA
AGGAAAGAAATAGTCGTGCGCTGTATTGCAAGCTAGCTTCACAGGGTTGT
GATCAGCCCATCAATTAAATATGTTTTTACACGGGACATTGGTTGCATCT
GTCCAGATGGCAAGCGTTGTGTTTCAGATAGAAGTTAGCATGCAGGTTGA
AACCTTGCTGGATACTCGTTCCATCCATATGTCAGAGTTTCCATCATGAT
TTCTGTATTTCGAATATTTTTTGTTTTTGTAAATCAGGACGTGACCATGT
TGCGGGTTAACGGCCGTTCTAAAGGTTGGTATTCCCCTCTCCGTTTTTTC
CTCTTTCCCCTTTAATTAATTTTCTTCTCGTTTGTTTTTCCAAGTTTTCA
AAATGACGAAGTGGCATTTTCGCCTACAAATTTCCTTGAAGCTGTTTTTT
TGCAAGTTTTCTTGATTATTTCTCCAAAATCTCAGCTTTTTACCTGAAGA
AAACGAAAGAAAGAAAAGAAAAACAGAGAACACAGGAAAAAGGAAGGGGG
AAAATCCCCATCTTTAGCACGGCCCGAGGTGGTCTTACAAGTGACACCGG
TCTCTCATCTACTCCCGACCTGGAGCCCCCACTTGAAAACTTGAAGAGAA
ACAAAGGACCCCTAGGGTATGACATGATAACAGAGAATTAGGAGCTGTGG
TTGTTCAAATCGGCAGTGGTGTACAGACAGTGCATACAGCACGGACGGCG
AGTTGTTGACCACGGTTTTGCGCACAATCTCTTCAGCGCTCCACTTTCGT
CTTGTACTCTTTTTTTTATTCCAAAAAAAGCTCCGTTAGCTCCCGTAAGA
TTGAAATTCAGCTGCGGGTAGGTTTACGTTTTTCAAGCCGACAACTAAGC
ATAATTTCGTCGCCATTTTTTTTATTTTTTTATTTAGTGTTGTGATGATT
CGCTTACATACAACTTTGCATCATCCGCGACCTCGCTGCGTGGGTGTTTA
CTGTTGCTGTTGGCGTTATTGTTGTTGCTGCCGCCGCCGTCGGTGCTCTG
CATGCTGGTTTGATCCACTTTCATGTTTTTTCGAAAAAACACAGAGTTGA
CGACGAGGACATGCCTCCGCATCCTACCAAGTTGGGGGAGAGGTTGCCCG
GTATCAACCAACGACCTTTGACAGCCGACAGGTGATCACGGTTTTTGTTT
ATTTCACGTGTACGGCACAAAATTTAGACGATTAAAAGCAATACTGAACA
CCTTTTGGTGCGCGTTCTTCTTTTGTAATATATATGTTATGCCGTAGAGT
GCTCTGAGACCGCCCTCGAGGGAGCGGGGGGGAGGTTTCGAGTCCGTTTT
TTTTATCGACGGCGAGATTCCCATGTACATTCATAAAAGCACGTCGATCA
ATCTTAAGGTGGTGTGTCAAAACACCGTTCGCGTCGTTTAGTTCTCAGAG
TACTTACTCTACGGTATATTACAAGTTGGCCTGGCAACTGTATTCAGCGT
CTCCTGGAATTTTCGAGAGTACCACACTTATTCATGTAGTAAGTATGCCT
ATGGGAGGGATACATATTCGAAAGAATACCTGTGTTCCGCTGCCAAGTAT
TGCCCCATTGCACCCCTCGGACGAGTACAACGGTTCTTAGACCAAAGCTT
GAAGAGTAGTGGTGTGGGTTTCAGGATAAGCGGGCACATGAAGGAAGTAA
CGTGTTATCACCCCCTATGTACTAGTTTTTAAAATATATCGCTGCAGTCG
TAGATGGTCTAGGGCACTGTAAAATAATACATGCTCTTGTGCTGAACCTT
CAGTAAGTCCTTTTTAGTTTGCACCTGAATCAACCATCTGTGGTATTCGC
AGTCGTCCGGGGGGGGGTAACGTTGGTGAACGGCTGGGACTACTCTCCCC
CATTGCGTTATGATATGCAGGGCAAGGACGGAGGCATGCATGAAAAAAAA
ATCCGCTCGTGTCTTTTATATCGCTTCCACGCTATCCGTCATTATTTAGC
AGTTGGATTCGATTTGCTCTACGTGGGATGGGAAATTACGTTTATATGAA
TAAATGAAAACCCACAAACGTTCCTTTTCCATACCACTCAAAATGTGGAG
AAAAAATCCGGATTTTTGGACGGGCCTTTAAAGGCAGACTTGTTTTTGGG
CGCAATGTTTTTTTTTTTCATGAGATATAATTGCCCAATTCCTTCTCTTT
TGATCTAATCGTTGTGGCCGTGCTCAGTTTTCCAGCCTTGTGGAATACAA
GCTCGATAAAGTCAGTAGAAGCATATGCATGGGAAGTCCAGGTGTATACA
GCAGATGAACGCTGTCATATACAGCGTTGCTGTATCAATTTTTAGCAATA
AGTGAGTGATGAAATTATACGAATCGTGCCCCATGGGTAAATAAAAAAAA
AACGAATGTATTATTCAACACAGATGACGGCTGTCTGCTACAGTGTTGCT
GTGTCATGTTTTCATCAATACGTGGGTAATGAGATGGTATGAGTCATACT
CCATGCTTACTTTAGTCGTTTCGTGGAATATATCACTCGAGAGTAACACT
TTGAGTCGGTTATTCCTCCAATTTTAAGTTCATTCCTATTGGTCTAACAG
CTACGACACGCAAAACTTGAGAACGTCTCCACCGACACCTCCCCCCCCTC
TACACTCCCACGGGGCTTCCGCGCGACTCTCGGAAATTCCGGTCCATCGC
CAACAGCCAACCAAGGCTGCGCGTCATCCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig568:16170..21750-

>mRNA_H-paniculata_contig568.13221.1 ID=mRNA_H-paniculata_contig568.13221.1|Name=mRNA_H-paniculata_contig568.13221.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig568:16170..21750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGTTCAGTTTGGCGGGCTGCGGCGGTCAATCTCTCTAGCGACTAG
TACAACGACTACTGCAACACCATCAACGATATCGGCACCAGATTGCCAGC
ATCACTGCCACCATAGTATTCCAATTCCTAATGAAGCACCGGGTCAGAAG
GGCTCAGGAGACTGGCTAAATCAGCCGGGGACCATCAGACGGGGGCTTGT
CAAACCCGTCCACTTTGGAATTGACACCGGTGCACCCTCTCCAACCCGAT
GTCCGTTCAGTTTGGCGGGCTGCGGCGGTCAATCTCTCTAGCGACTAGTA
CAACGACTACTGCAACACCATCAACGATATCGGCACCAGATTGCCAGCAT
CACTGCCACCATAGTATTCCAATTCCTAATGAAGCACCGGGTCAGAAGGG
CTCAGGAGACTGGCTAAATCAGCCGGGGACCATCAGACGGGGGCTTGTCA
AACCCGTCCACTTTGGAATTGACACCGGTGCACCCTCTCCAACCCGAGTT
GACGACGAGGACATGCCTCCGCATCCTACCAAGTTGGGGGAGAGGTTGCC
CGGTATCAACCAACGACCTTTGACAGCCGACAGAGTTGACGACGAGGACA
TGCCTCCGCATCCTACCAAGTTGGGGGAGAGGTTGCCCGGTATCAACCAA
CGACCTTTGACAGCCGACAGCCAACCAAGGCTGCGCGTCATCCCGCCAAC
CAAGGCTGCGCGTCATCCCG
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