mRNA_H-paniculata_contig56783.13218.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56783.13218.1
Unique NamemRNA_H-paniculata_contig56783.13218.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: D8LK98_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK98_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.390e-22
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = 1
Query:    1 LDRQGRGGMSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSM 162
            L+R GRGGMSAVHLAAFHGY+D+L +LLEAG+DPNAV DDGETPLHTAC GGS+
Sbjct:  986 LNRTGRGGMSAVHLAAFHGYADSLRLLLEAGSDPNAVSDDGETPLHTACNGGSI 1039          
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: A0A3Q2E6M1_CYPVA (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=6 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2E6M1_CYPVA)

HSP 1 Score: 59.3 bits (142), Expect = 1.550e-8
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    4 DRQGRGGMSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSMNCVTLLLNYG 192
            D      +S +HLAA HG+S ALE+LL +  D +    DG TPL  AC+ G   CV+LLL++G
Sbjct:  587 DSDCEASLSPLHLAANHGHSGALEVLLASLLDVDVRTPDGRTPLSLACSRGHQECVSLLLHHG 649          
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: A0A4Q4Y4A9_9PEZI (Uncharacterized protein n=1 Tax=Monosporascus sp. 5C6A TaxID=2211642 RepID=A0A4Q4Y4A9_9PEZI)

HSP 1 Score: 59.3 bits (142), Expect = 1.560e-8
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   22 GMSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSMNCVTLLLNY 189
            G SA+H+AA+ G+ +AL++LLEAG DP+   +   TPLH AC  G ++ V +LL++
Sbjct:  109 GQSALHIAAYKGFDNALKVLLEAGVDPSIKDNWSRTPLHEACWTGKVDTVKILLDH 164          
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: A0A251SCX5_HELAN (Putative ankyrin repeat-containing domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251SCX5_HELAN)

HSP 1 Score: 58.9 bits (141), Expect = 2.030e-8
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   22 GMSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSMNCVTLLLNYG 192
            G S  H+ A+HG+ D +  LL AGADPNA+ D+GE+ LH A T     C  ++L +G
Sbjct:  116 GPSVAHVCAYHGHPDCMRELLLAGADPNAIDDEGESVLHRAVTKKYTECALVILEHG 172          
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: UPI001CFB12B7 (ankyrin repeat and SOCS box protein 18 isoform X2 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFB12B7)

HSP 1 Score: 58.9 bits (141), Expect = 2.050e-8
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   19 GGMSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSMNCVTLLLNYGEL 198
            GG +A+H A  + ++D +E+LL+ GA+PN + +DG  PLH   T  S  C  LLL YG +
Sbjct:  115 GGKAALHHACENAHTDCVELLLDHGANPNLLTEDGLAPLHLCTTHKSFRCAKLLLKYGAV 174          
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: UPI001CF947F5 (ankyrin repeat and SOCS box protein 18 isoform X1 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF947F5)

HSP 1 Score: 58.9 bits (141), Expect = 2.060e-8
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   19 GGMSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSMNCVTLLLNYGEL 198
            GG +A+H A  + ++D +E+LL+ GA+PN + +DG  PLH   T  S  C  LLL YG +
Sbjct:  151 GGKAALHHACENAHTDCVELLLDHGANPNLLTEDGLAPLHLCTTHKSFRCAKLLLKYGAV 210          
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: A0A8J4V1Z6_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V1Z6_9MYCE)

HSP 1 Score: 58.9 bits (141), Expect = 2.120e-8
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   22 GMSAVHLAAFHGYSDALE--ILLEAGADPNAVCDDGETPLHTACTGGS--------MNCVTLLLNYG 192
            GM+A+H+AAFHGY +AL   IL   GA+ NA C DG TPL  A  G S        ++C++LLL+ G
Sbjct:  543 GMTALHVAAFHGYPEALNTLILSNGGAEVNAKCKDGSTPLLKATMGASGSESKENSLSCISLLLDKG 609          
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: A0A0K9RT99_SPIOL (RING-type E3 ubiquitin transferase n=2 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9RT99_SPIOL)

HSP 1 Score: 58.9 bits (141), Expect = 2.140e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   22 GMSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSMNCVTLLLNYG 192
            G S  H+ A+HG  D +  LL AGADPNAV D+GE+ LH A T    +C  ++L +G
Sbjct:  576 GPSVAHVCAYHGQPDCMRELLIAGADPNAVDDEGESVLHRAITKKYTDCALIILEHG 632          
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: A0A371FYN4_MUCPR (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371FYN4_MUCPR)

HSP 1 Score: 58.9 bits (141), Expect = 2.140e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   22 GMSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSMNCVTLLLNYG 192
            G S  H+ A+HG  D ++ LL AGADPNAV D+GE+ LH A    S +C  ++L  G
Sbjct:  568 GPSVAHVCAYHGQPDCMQELLLAGADPNAVDDEGESVLHRAVANKSTDCALVILESG 624          
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Match: A0A7J8STE2_GOSDV (Protein kinase domain-containing protein n=1 Tax=Gossypium davidsonii TaxID=34287 RepID=A0A7J8STE2_GOSDV)

HSP 1 Score: 58.5 bits (140), Expect = 2.820e-8
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   22 GMSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSMNCVTLLLNYG 192
            G S  H+ A+HG  D +  LL AGADPNAV D+GE+ LH A      +C  ++L YG
Sbjct:  404 GPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCALVILEYG 460          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56783.13218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK98_ECTSI2.390e-2281.48Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
A0A3Q2E6M1_CYPVA1.550e-846.03Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A4Q4Y4A9_9PEZI1.560e-846.43Uncharacterized protein n=1 Tax=Monosporascus sp. ... [more]
A0A251SCX5_HELAN2.030e-845.61Putative ankyrin repeat-containing domain-containi... [more]
UPI001CFB12B72.050e-843.33ankyrin repeat and SOCS box protein 18 isoform X2 ... [more]
UPI001CF947F52.060e-843.33ankyrin repeat and SOCS box protein 18 isoform X1 ... [more]
A0A8J4V1Z6_9MYCE2.120e-847.76Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A0K9RT99_SPIOL2.140e-847.37RING-type E3 ubiquitin transferase n=2 Tax=Chenopo... [more]
A0A371FYN4_MUCPR2.140e-847.37RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A7J8STE2_GOSDV2.820e-847.37Protein kinase domain-containing protein n=1 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56783contigH-paniculata_contig56783:326..547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D8LK98
KEGG koko:K21411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons1
Model size222
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.7012918-CDS-H-paniculata_contig56783:325..5231622930607.7012918-CDS-H-paniculata_contig56783:325..523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56783 326..523 -
1691481370.0190592-CDS-H-paniculata_contig56783:325..5231691481370.0190592-CDS-H-paniculata_contig56783:325..523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56783 326..523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.7222118-UTR-H-paniculata_contig56783:523..5471622930607.7222118-UTR-H-paniculata_contig56783:523..547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56783 524..547 -
1691481370.0321274-UTR-H-paniculata_contig56783:523..5471691481370.0321274-UTR-H-paniculata_contig56783:523..547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56783 524..547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56783.13218.1prot_H-paniculata_contig56783.13218.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56783 326..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56783.13218.1

>prot_H-paniculata_contig56783.13218.1 ID=prot_H-paniculata_contig56783.13218.1|Name=mRNA_H-paniculata_contig56783.13218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MSAVHLAAFHGYSDALEILLEAGADPNAVCDDGETPLHTACTGGSMNCVT
LLLNYGELSFLSKLF*
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mRNA from alignment at H-paniculata_contig56783:326..547-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56783.13218.1 ID=mRNA_H-paniculata_contig56783.13218.1|Name=mRNA_H-paniculata_contig56783.13218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig56783:326..547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGATAGGCAGGGGCGCGGGGGCATGTCGGCCGTGCACCTTGCTGCTTT CCACGGGTACTCGGATGCTCTGGAGATCTTGCTTGAGGCTGGGGCCGATC CGAACGCCGTTTGCGATGATGGAGAGACCCCGTTACACACGGCTTGCACG GGCGGTAGTATGAATTGTGTCACCCTTCTGTTGAACTACGGTGAGCTTTC TTTTTTATCTAAACTTTTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig56783:326..547-

>mRNA_H-paniculata_contig56783.13218.1 ID=mRNA_H-paniculata_contig56783.13218.1|Name=mRNA_H-paniculata_contig56783.13218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig56783:326..547- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGCCGTGCACCTTGCTGCTTTCCACGGGTACTCGGATGCTCTGGA
GATCTTGCTTGAGGCTGGGGCCGATCCGAACGCCGTTTGCGATGATGGAG
AGACCCCGTTACACACGGCTTGCACGGGCGGTAGTATGAATTGTGTCACC
CTTCTGTTGAACTACGGTGAGCTTTCTTTTTTATCTAAACTTTTTTAAAT
GTCGGCCGTGCACCTTGCTGCTTTCCACGGGTACTCGGATGCTCTGGAGA
TCTTGCTTGAGGCTGGGGCCGATCCGAACGCCGTTTGCGATGATGGAGAG
ACCCCGTTACACACGGCTTGCACGGGCGGTAGTATGAATTGTGTCACCCT
TCTGTTGAACTACGGTGAGCTTTCTTTTTTATCTAAACTTTTTTAA
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