mRNA_H-paniculata_contig56765.13217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56765.13217.1
Unique NamemRNA_H-paniculata_contig56765.13217.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A0J7KRG1_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRG1_LASNI)

HSP 1 Score: 84.0 bits (206), Expect = 4.810e-17
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIRE 246
            ++W SR+Q++VT S+TEAEY+AA  A KE V LR LL  +G+ C   T L+   +S I ++K    H RTKHI VR+H IR+
Sbjct: 1488 VTWSSRRQKIVTLSTTEAEYIAASSAAKEAVWLRNLLDEVGYRCDSPTVLYVDNQSAIKIAKNPEFHERTKHIDVRYHHIRK 1569          
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A2R6PCF8_9APHY (Uncharacterized protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6PCF8_9APHY)

HSP 1 Score: 82.0 bits (201), Expect = 2.280e-16
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIR 243
            +SW S+KQ+LVT S+TEAEYVAA  A KE + +R+LLG +     G TTL+   +S I L+K    H RTKHI +R+H IR
Sbjct: 1357 VSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRQLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIR 1437          
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 81.3 bits (199), Expect = 3.800e-16
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIR 243
            +SW S+KQ+LVT S+TEAEYVAA  A KE + +R LLG +     G TTL+   +S I L+K    H RTKHI +R+H IR
Sbjct:  340 VSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIR 420          
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A5N5G5U8_9ROSA (Uncharacterized protein n=4 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G5U8_9ROSA)

HSP 1 Score: 75.1 bits (183), Expect = 2.330e-15
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIRE 246
            +SW S+KQQ+VT S+TEAE+VAA     + + LR +LG++G+  + ST ++    S I LS+    H R+KHI VR+H +R+
Sbjct:    6 VSWSSKKQQIVTLSTTEAEFVAAASCSCQAIWLRRMLGVLGYQQQDSTLIYCDNVSAIKLSRNPVMHGRSKHIDVRYHFLRD 87          
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A0J7KE66_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KE66_LASNI)

HSP 1 Score: 79.0 bits (193), Expect = 2.690e-15
Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIRE 246
            ++W S++Q LVT S+TE+EYVAA  A +E + LR LL  +G+ C  +T ++   +S I L +    H RTKHI +R+H IRE
Sbjct:  531 VTWSSQRQNLVTLSTTESEYVAAASAAREAIWLRNLLKEVGYPCANATVIYIDNQSAIKLVRNPEYHKRTKHIDIRFHYIRE 612          
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A4S4KEU9_9APHY (Integrase catalytic domain-containing protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KEU9_9APHY)

HSP 1 Score: 78.6 bits (192), Expect = 3.770e-15
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIR 243
            +SW S+KQ+LVT S+TEAEYVAA  A KE + +R L+G +       TTL+   ++ I LSK    H RTKHI +R+H IR
Sbjct: 1339 VSWSSKKQELVTLSTTEAEYVAATHAAKEAIWIRRLIGEVFRPLDEPTTLYSDSQTAIALSKDGHYHARTKHINIRYHFIR 1419          
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A4S4K4Q2_9APHY (Uncharacterized protein n=2 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K4Q2_9APHY)

HSP 1 Score: 78.2 bits (191), Expect = 5.150e-15
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIR 243
            +SW S+KQ+LVT S+TEAEYVAA  A KE + +R L+G +       TTLF   ++ I L+K    H RTKHI +R+H IR
Sbjct: 1357 VSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLIGEVYRPLEEPTTLFSDSQTAIALTKDGQYHARTKHIDIRYHFIR 1437          
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A232EDW9_9HYME (Uncharacterized protein n=1 Tax=Trichomalopsis sarcophagae TaxID=543379 RepID=A0A232EDW9_9HYME)

HSP 1 Score: 76.6 bits (187), Expect = 9.650e-15
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIRE 246
            + W S++Q+LVT S+TEAEYVAA  A +E V LR+LL  IG  C   T LF   +  I L+K    H R+KHI V++H +RE
Sbjct:    6 VVWSSKRQKLVTLSTTEAEYVAASTAARELVWLRQLLSEIGRPCEIPTDLFVDNQGAIRLAKNVEFHKRSKHINVKYHFLRE 87          
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A8H6X7M0_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6X7M0_9AGAR)

HSP 1 Score: 77.0 bits (188), Expect = 1.260e-14
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIRE 246
            ISW S+KQ +VT SSTE+EYVA   A KE + LR+LL  +     G TTLF   +  I LS+ S  H RTKHI +R+H IR+
Sbjct:  414 ISWSSKKQPIVTLSSTESEYVALTHASKELIWLRKLLSELRLLPAGPTTLFCDNQGTIVLSRDSTYHARTKHIDIRFHFIRQ 495          
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Match: A0A8H7CY76_9AGAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H7CY76_9AGAR)

HSP 1 Score: 76.6 bits (187), Expect = 1.280e-14
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTLFEGKESDINLSKRSGTHCRTKHIGVRWHRIRE 246
            ISW S+KQ +VT SSTE+EYVA   A KE + LR+LL  +     G TTLF   +  I LS+ S  H RTKHI +R+H IR+
Sbjct:  240 ISWSSKKQPIVTLSSTESEYVALTHASKELIWLRKLLSELRLLPTGPTTLFCDNQGAIVLSRDSTYHARTKHIDIRFHFIRQ 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56765.13217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0J7KRG1_LASNI4.810e-1748.78Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A2R6PCF8_9APHY2.280e-1651.85Uncharacterized protein n=1 Tax=Hermanssonia centr... [more]
A0A4S4K468_9APHY3.800e-1651.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N5G5U8_9ROSA2.330e-1543.90Uncharacterized protein n=4 Tax=Pyrus ussuriensis ... [more]
A0A0J7KE66_LASNI2.690e-1545.12Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A4S4KEU9_9APHY3.770e-1549.38Integrase catalytic domain-containing protein n=2 ... [more]
A0A4S4K4Q2_9APHY5.150e-1549.38Uncharacterized protein n=2 Tax=Hermanssonia centr... [more]
A0A232EDW9_9HYME9.650e-1548.78Uncharacterized protein n=1 Tax=Trichomalopsis sar... [more]
A0A8H6X7M0_9AGAR1.260e-1451.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H7CY76_9AGAR1.280e-1451.22Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56765contigH-paniculata_contig56765:386..634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score84.7
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog7425.NV18849-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.6469414-CDS-H-paniculata_contig56765:385..6341622930607.6469414-CDS-H-paniculata_contig56765:385..634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56765 386..634 +
1691481370.0065765-CDS-H-paniculata_contig56765:385..6341691481370.0065765-CDS-H-paniculata_contig56765:385..634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56765 386..634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56765.13217.1prot_H-paniculata_contig56765.13217.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56765 386..634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56765.13217.1

>prot_H-paniculata_contig56765.13217.1 ID=prot_H-paniculata_contig56765.13217.1|Name=mRNA_H-paniculata_contig56765.13217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
ISWCSRKQQLVTWSSTEAEYVAAGEAGKETVHLRELLGLIGFGCRGSTTL
FEGKESDINLSKRSGTHCRTKHIGVRWHRIRE*
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mRNA from alignment at H-paniculata_contig56765:386..634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56765.13217.1 ID=mRNA_H-paniculata_contig56765.13217.1|Name=mRNA_H-paniculata_contig56765.13217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at H-paniculata_contig56765:386..634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGA GGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTACATCTTA GGGAGTTACTAGGATTGATAGGTTTCGGATGCAGGGGGAGCACGACATTG TTTGAGGGCAAAGAGTCCGATATCAATCTCAGTAAGAGATCTGGCACACA CTGCAGGACAAAGCACATCGGAGTGCGCTGGCACAGAATTCGAGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig56765:386..634+

>mRNA_H-paniculata_contig56765.13217.1 ID=mRNA_H-paniculata_contig56765.13217.1|Name=mRNA_H-paniculata_contig56765.13217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig56765:386..634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGA
GGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTACATCTTA
GGGAGTTACTAGGATTGATAGGTTTCGGATGCAGGGGGAGCACGACATTG
TTTGAGGGCAAAGAGTCCGATATCAATCTCAGTAAGAGATCTGGCACACA
CTGCAGGACAAAGCACATCGGAGTGCGCTGGCACAGAATTCGAGAGTGAA
TAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAG
GCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTACATCTTAG
GGAGTTACTAGGATTGATAGGTTTCGGATGCAGGGGGAGCACGACATTGT
TTGAGGGCAAAGAGTCCGATATCAATCTCAGTAAGAGATCTGGCACACAC
TGCAGGACAAAGCACATCGGAGTGCGCTGGCACAGAATTCGAGAGTGA
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