mRNA_H-paniculata_contig56761.13216.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56761.13216.1
Unique NamemRNA_H-paniculata_contig56761.13216.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig56761.13216.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.820e-12
Identity = 47/127 (37.01%), Postives = 65/127 (51.18%), Query Frame = -2 
Query:  126 IPTHVVLLPPRRNESEALKEEERKEQNWTKRWKTWY------KEGKKAGK-------------GRITKELRLFFLCGHDNSLAECGLEGKGYRIETLRTWVKKSVPLVKALLVVLNITLKNFTGLSI 449
            IP  V +LP R      L E +R  + W+   K W       K+ K   +             G +T+ELRLFFLCG D SLAECG +G+GY ++    WV+K+ P  K  L + +I LK  TGL++
Sbjct:  890 IPRFVCVLPAR---DTRLSESDRSFEKWSTALKEWCASKSPAKDAKNPNRKTSILGLNKPQLRGLVTRELRLFFLCGQDKSLAECGPDGQGYEVKEFLDWVRKAAPAAKIGLALASIALKVCTGLAV 1013
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56761.13216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUH6_ECTSI1.820e-1237.01LRR-GTPase of the ROCO family, incomplete sequence... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56761contigH-paniculata_contig56761:250..707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size460
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.565137-CDS-H-paniculata_contig56761:249..7051622930607.565137-CDS-H-paniculata_contig56761:249..705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56761 250..705 +
1691481369.9958236-CDS-H-paniculata_contig56761:249..7051691481369.9958236-CDS-H-paniculata_contig56761:249..705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56761 250..705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56761.13216.1prot_H-paniculata_contig56761.13216.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56761 250..705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56761.13216.1

>prot_H-paniculata_contig56761.13216.1 ID=prot_H-paniculata_contig56761.13216.1|Name=mRNA_H-paniculata_contig56761.13216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
TSSTRSSAAEQASSVNVSAAPSIIDETTLHNDCSSSLAISTGMLNPVKFF
SVIFRTTSRALTSGTLFFTHVRRVSIRYPFPSSPHSARLLSCPQRKNSLS
SFVILPFPAFLPSLYHVFHLFVQFCSFLSSSFSASDSFRRGGKSTTWVGM
RT
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mRNA from alignment at H-paniculata_contig56761:250..707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56761.13216.1 ID=mRNA_H-paniculata_contig56761.13216.1|Name=mRNA_H-paniculata_contig56761.13216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig56761:250..707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTCATCGACGCGCTCTTCCGCAGCGGAGCAAGCTTCGTCTGTCAATGT
TTCTGCCGCACCCTCCATTATCGATGAGACGACTTTGCACAACGATTGTT
CATCTTCACTTGCGATCTCAACGGGAATGCTCAACCCTGTGAAGTTCTTC
AGCGTGATATTTAGGACGACCAGTAGGGCCTTGACGAGCGGGACACTCTT
TTTCACCCACGTTCGCAGAGTCTCTATCCGGTACCCCTTTCCTTCAAGCC
CACATTCTGCAAGGCTGTTGTCGTGTCCACAGAGAAAGAACAGTCTAAGC
TCCTTCGTTATCCTGCCTTTCCCGGCCTTCTTGCCCTCCTTATACCATGT
CTTCCACCTCTTCGTCCAGTTTTGTTCCTTTCTTTCCTCCTCTTTCAGCG
CTTCAGACTCGTTTCGCCGCGGAGGCAAGAGCACCACATGGGTTGGAATG
CGAACCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig56761:250..707+

>mRNA_H-paniculata_contig56761.13216.1 ID=mRNA_H-paniculata_contig56761.13216.1|Name=mRNA_H-paniculata_contig56761.13216.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig56761:250..707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTCATCGACGCGCTCTTCCGCAGCGGAGCAAGCTTCGTCTGTCAATGT
TTCTGCCGCACCCTCCATTATCGATGAGACGACTTTGCACAACGATTGTT
CATCTTCACTTGCGATCTCAACGGGAATGCTCAACCCTGTGAAGTTCTTC
AGCGTGATATTTAGGACGACCAGTAGGGCCTTGACGAGCGGGACACTCTT
TTTCACCCACGTTCGCAGAGTCTCTATCCGGTACCCCTTTCCTTCAAGCC
CACATTCTGCAAGGCTGTTGTCGTGTCCACAGAGAAAGAACAGTCTAAGC
TCCTTCGTTATCCTGCCTTTCCCGGCCTTCTTGCCCTCCTTATACCATGT
CTTCCACCTCTTCGTCCAGTTTTGTTCCTTTCTTTCCTCCTCTTTCAGCG
CTTCAGACTCGTTTCGCCGCGGAGGCAAGAGCACCACATGGGTTGGAATG
CGAACCACTTCATCGACGCGCTCTTCCGCAGCGGAGCAAGCTTCGTCTGT
CAATGTTTCTGCCGCACCCTCCATTATCGATGAGACGACTTTGCACAACG
ATTGTTCATCTTCACTTGCGATCTCAACGGGAATGCTCAACCCTGTGAAG
TTCTTCAGCGTGATATTTAGGACGACCAGTAGGGCCTTGACGAGCGGGAC
ACTCTTTTTCACCCACGTTCGCAGAGTCTCTATCCGGTACCCCTTTCCTT
CAAGCCCACATTCTGCAAGGCTGTTGTCGTGTCCACAGAGAAAGAACAGT
CTAAGCTCCTTCGTTATCCTGCCTTTCCCGGCCTTCTTGCCCTCCTTATA
CCATGTCTTCCACCTCTTCGTCCAGTTTTGTTCCTTTCTTTCCTCCTCTT
TCAGCGCTTCAGACTCGTTTCGCCGCGGAGGCAAGAGCACCACATGGGTT
GGAATGCGAACC
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