mRNA_H-paniculata_contig5675.13215.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5675.13215.1
Unique NamemRNA_H-paniculata_contig5675.13215.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5675.13215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5675contigH-paniculata_contig5675:9071..13486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size594
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5675.13215.1prot_H-paniculata_contig5675.13215.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5675 9071..13238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.344812-CDS-H-paniculata_contig5675:9070..91891622930607.344812-CDS-H-paniculata_contig5675:9070..9189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5675 9071..9189 -
1691481369.8897069-CDS-H-paniculata_contig5675:9070..91891691481369.8897069-CDS-H-paniculata_contig5675:9070..9189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5675 9071..9189 -
1622930607.3633583-CDS-H-paniculata_contig5675:9963..100451622930607.3633583-CDS-H-paniculata_contig5675:9963..10045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5675 9964..10045 -
1691481369.8982704-CDS-H-paniculata_contig5675:9963..100451691481369.8982704-CDS-H-paniculata_contig5675:9963..10045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5675 9964..10045 -
1622930607.3816235-CDS-H-paniculata_contig5675:13094..132381622930607.3816235-CDS-H-paniculata_contig5675:13094..13238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5675 13095..13238 -
1691481369.9060647-CDS-H-paniculata_contig5675:13094..132381691481369.9060647-CDS-H-paniculata_contig5675:13094..13238Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5675 13095..13238 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.3976574-UTR-H-paniculata_contig5675:13238..134861622930607.3976574-UTR-H-paniculata_contig5675:13238..13486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5675 13239..13486 -
1691481369.9142325-UTR-H-paniculata_contig5675:13238..134861691481369.9142325-UTR-H-paniculata_contig5675:13238..13486Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5675 13239..13486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5675.13215.1

>prot_H-paniculata_contig5675.13215.1 ID=prot_H-paniculata_contig5675.13215.1|Name=mRNA_H-paniculata_contig5675.13215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MTLSLYSASKSTAAVVVLLGSLLGACCVECQPLAVGYQRVVKLAEESVAT
QTDSKGSDYGILVDNSYSWQWNAEAGWRPRGRRQRRGAGSPNVAFLADTD
RAEDGGGYGSRRLGW
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mRNA from alignment at H-paniculata_contig5675:9071..13486-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5675.13215.1 ID=mRNA_H-paniculata_contig5675.13215.1|Name=mRNA_H-paniculata_contig5675.13215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4416bp|location=Sequence derived from alignment at H-paniculata_contig5675:9071..13486- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTAGAAGAGGAAGGTGTGCTGGCAGAAGGAATTACACCAACGATATC
GTGTGATCACGATACCTACTTCCTACCCAGGAGAGCGATTTTCAAGGAGT
AGCTGACCTCGCCTTTCGTGCTTCCAGTTTGCCAGGGTGTGTTGTAATTT
GTTTCCGTGTTTTGGATTGTTTCTTCAATCTGCGGAAGAAAAGAAGCGGG
AGTGAGGGAGGTGTCCATTTTTGTAACAATAGAAGGTTTAGGTATCTGAT
GACTTTATCTCTCTATTCTGCAAGCAAGTCTACTGCCGCTGTGGTCGTTT
TGCTGGGGTCTCTACTTGGAGCATGCTGCGTGGAATGCCAGCCGCTGGCG
GTGGGCTATCAGAGGGTGGTCAAGCTGGCAGAAGAGAGTGTGGTAAGTGT
TCGTTTTTACATTTGTAGGTTGTGGTTCGCAGCAGATGACCCTAATCAGC
ATTGATGATAACCCCAATTGTCTGCACAGGCTTACCCTAGCAAGTATAGA
GCGGAGAACACCAAGGACTAACAGAGCATCGATTTCACGTCCATAACTCC
GTCACTTGTTGGCCAGGAGAGTTATGTGCCGCTATTCTGTGCGTTTGGTG
TAACTGCTCCGTCTGCCTCTGATCTAGTGCTATTTCAAGTTGTTCGTTTA
TCACGCGTCGTTGTCATCATCATTCGTTATTTCTCAGCTCTTTTAACTGC
TTCTCATGTTCGGCGGAATAACGTCCAGCGTTCCCCCCTCGAGGCGTCAT
GAGCGGCTACAACGCCCCCCCTCCCTGCAACCGGTTGGAATCTTTCTTAT
GATCAGGTGGCTTTCCTTCCTTGCACAATATGGGCAGTATGGTACAGCAC
AGCTGTAGTTCGCGTTGACTCCATCGACTATGCTGTACTTATTACGCGTT
CAGCATTACAGACAGTGCAGACAGCAGGTAGTGTAAAAGGTGAAGCACAC
TACAGCACGGGACATGACAATGCATCAAGATGAATTTACCACGGCAGTGA
AGATGCAATGAATGAACGGAAATTAACTACACCATCTCCACCAGAGACAG
ACTATGAATAAGGCACAGTACACTCAAGGGGGATGTACCCTAGATTCGCG
CGAAACTAATGCTGGGAATAATCGTAACCCTAACCGTGTCCCCAACCCAT
GGGCCTGGAGTACGTCTGTAGAAGTCAAGTCAGGCCGTCGGTAGCGTCTA
AAATCGCTCAAACGCTGCGCCGCTCCGCGGCGTGGCATCGACCCTGGAGT
CAGGTTCGTGGAGGGGTAGGGCTTACCCCAGAGTAAAACCAAGTGAAACG
AGACTTTTTACATTTTACAACGATCTGGGTAAACTCTATTGATTCAGTCC
ACGAGCCGTGCATCAACTGTAAATCTGCTATGTTCCCCCTGCCCTGGGTG
CTGTTGAGAAGACACCATATTCCTTTATGCGGGCCCTTAGTGGCTCTTAT
GTCTGGAATGATTTCTTTGTTTTCAATATAGTATTTTTCCCCTAAACGCC
CCACTGCTTGTTCTAGCAAAAACAATCGTAGATATCTTGTGCCACAATCA
TGCAGAGACTGCACAACTGCAGAGGTCAACACCACCTTACAACTGTCTAC
CGCCAGCATTGAAGGTCGTATAAGGAAGTAGTGACTCATTTCCCAGAACA
GCCCAAATTTTGCTACGGTACGCGCCCGATGACAAGGAATTCTTAATCTG
GGTGAAGCACAAGCTCATTTTAAGAATCATGAGTAGTTCTATTTCTCACT
TGATATATAGCAAATTTGACCCCAGTTCTAAGGCTGGATTTCTGTATGGT
CGGCAAAAAATGAGCCTCAGTTTTTGATAGGGCCGGCACTACATGCTTTA
TTTTTTTCATTACACGTGGACCCCATATAAGACCCGCGATGAACAAGGTG
GGTTCTCTCTTGTACCATCATAACCCGCCTTCTTCCGGGCCCGCCACCCC
TATAAGCCGGGTTTTCCACTCAGGGTTGACGCCGAACCCGTCAAGCTCTA
CCGGCCATCAGTGTCGTCAGTACGGCAGATACCTGCATGGGACGTGTGAC
GTCAAAAACGGGAGTGCAAGGCTGAAGATGATGTCATACTCGAGGGCGTG
GGTACATAGGGAGAGTCGGCATTGGTTCGTCCGCTGCAGCCGTACTCAGA
CGTGGCAGAATAGTTTTGGCATTCTAGAGTCAAAGGCTGAGGAAGGTGCC
CTGTATGACGTCCGTTTTACCTTCGCAAGGCCGAGATGGCATGGATCAAA
TAGCAACCACGCCAGCAGAAAGGCACGAGAAATTTCTTGCGGAACTGGCT
GTGAAATCGTTACGCAGTAGTAGCCGGTTTATTGCTTTCTGTATGTAGAC
CGCAATGGTGGGTGTTGTAGTTGCTGTTACCCCCTTGTTTTGGTTCCGTA
CATGCTGTAGCGTACCTCGTAGATTCAAGGTACTCATCGGTAGTGTTCTG
AAAACCTGAGCGCAGCTGTCCATGCGTACCAAGCTCATTGGTTTGGACAG
TACGCGGGGGTGAGTTTCAGAAGCTTGGATTCGAATTTTTCTATTGGTTT
TTCCTCTTTCTCGGATACTATAGCAGACGTTCGACAACAGCTGGGTTGTG
TTCCGTGTGTCAAAGTACATCGATTTTTTCATGCCGTTTTTCTCTTCTCT
GCTTGCGTCACTCACCTTTTTTTCGAACGTTGGTAATAATTGAACTTCTC
CGTTCAACCAAGGACCTTTGGGGTGTCGCTGTTGTTCCACTGACTGACCA
TGAGAGCGAAATTTGTCGACAGTGCTTCACTGCCTCCAGCTTCACGGATA
TACGGGTTAGCTCCCTTTCTTGGGCGATCCCATCTCCTCCACCGTGAAGC
CAGCTGCTGGCTGCTGGCGCCTCTTGTGCTTGAGCTTGTCCGTTGGCAGT
ACTTCGATTTCGTTAGTTGCCAAGTCGTCCTAGGATACGGGAGGTACCCT
CTCTATCTTACGTCGAGGTTGGCGAATAACTCGTGTAAGGGAGTGACCAT
ATCTTAACCTCTATTTTGAGGTTACAATTATATTATGATGGATCCAAGAA
TGAACTGCAAGTACATATCAAAATTAAAATTATGAAGAAAGAAAGTGATT
TGGTCGAAATATTTTACCCCACGGACAACTACGAGTACTTGGCGTATTCG
CCACGAAAGTTGAAGAGTATTCGCCTGAGTTTCAAAATGAGCTCTGGTAT
TTTTTGTGCCCCGAACCATCGACGACGGCTAATAATACTCGTAAATCGAA
TGGGCACGGGTGGGTACTGTATTCTATGTGGCCGCTCATTCTGAAACTCA
GTCGAATACTTTTTAGTTTCGGTGGCGAATACGCCAATTATTTGTATTCG
TCCGGGAGGTGTGATAGTGATTGTTAAATTGTTACACCGTTGTCTCCCTC
CCCTTCTCCCCACACGCAACGTGTCTGTGTCGAGGACACAGGCGACTCAA
ACAGACAGCAAAGGCTCTGATTATGGTATCTTGGTAGATAACAGCTACAG
CTGGCAGTGGAATGCGGAAGCAGGTGAGTGTACAGCAATCAATGTATAAG
ACAAGCAGGGTTGCTCGCAATTTTGCCAAGATCTGTAGTGCCGAAGTGAT
TTAGGAAAATAGGTAAGAATCGCCTCAAGGATGTAAGGGTCAAGAGCGAC
GGTAGCTGGAAGCATATACCGGAACTATTTACTGGTTGATCCACAGCGGT
ACGGAGGAGATTGTAGTTCTAAGATGGGACATCGCCTGCTCTGGGGATTG
ATATCAACGTTGGGGATGTATAAGTAGTCCGGAGCGTACGGACTTGAGGT
TTTGTTCCGGAGTAAATACACTGGTCATCATCCAGGGCCGGAAGCGGCTA
ATAAAAAGTTGTTCAATTAATGTGACAACGCGCTCCCCAGGATTCAGGAG
TCCCAGGAACTTTGTTGAGATCTGTTGATTTAGACGTGTTGCCTCTGCAT
TCCAGGCTCTTCAAGAGAAATTCGGGTTTGGAAAATGTTGTACATTGTAC
GCCCCTTGCTCAGCGCTCATCTGGCATACTAGTGATACTGGGGCTACCAA
AACCTACATTCCTGCTTTTTCTTGGCTCAATTCCCAAAGCTGCGCTCTAA
AGGGCTCGCTACCACCCTCTCGCCCAAGCAGGCACGATGCCCACGAAGGA
GATTCTTTCATTGAAAGGCACAAGAGTATAGATTCGGAAAGTATTCCGAA
ATGATATCGACGATTTTGCAGTATTCATGAAAGACCTTTCATAGACCGGA
AACATCCTTTTTCATAGTGTTCCTTCTCTTTTTATTTCATCGATCAGGGT
GGCGGCCACGAGGCCGTCGACAACGACGCGGGGCAGGGAGTCCAAACGTC
GCCTTCTTGGCGGATACAGACAGGGCAGAGGATGGCGGTGGATACGGCAG
CCGGCGTTTGGGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5675:9071..13486-

>mRNA_H-paniculata_contig5675.13215.1 ID=mRNA_H-paniculata_contig5675.13215.1|Name=mRNA_H-paniculata_contig5675.13215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig5675:9071..13486- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTTATCTCTCTATTCTGCAAGCAAGTCTACTGCCGCTGTGGTCGT
TTTGCTGGGGTCTCTACTTGGAGCATGCTGCGTGGAATGCCAGCCGCTGG
CGGTGGGCTATCAGAGGGTGGTCAAGCTGGCAGAAGAGAGTGTGATGACT
TTATCTCTCTATTCTGCAAGCAAGTCTACTGCCGCTGTGGTCGTTTTGCT
GGGGTCTCTACTTGGAGCATGCTGCGTGGAATGCCAGCCGCTGGCGGTGG
GCTATCAGAGGGTGGTCAAGCTGGCAGAAGAGAGTGTGGCGACTCAAACA
GACAGCAAAGGCTCTGATTATGGTATCTTGGTAGATAACAGCTACAGCTG
GCAGTGGAATGCGGAAGCAGGCGACTCAAACAGACAGCAAAGGCTCTGAT
TATGGTATCTTGGTAGATAACAGCTACAGCTGGCAGTGGAATGCGGAAGC
AGGGTGGCGGCCACGAGGCCGTCGACAACGACGCGGGGCAGGGAGTCCAA
ACGTCGCCTTCTTGGCGGATACAGACAGGGCAGAGGATGGCGGTGGATAC
GGCAGCCGGCGTTTGGGGTGGGGTGGCGGCCACGAGGCCGTCGACAACGA
CGCGGGGCAGGGAGTCCAAACGTCGCCTTCTTGGCGGATACAGACAGGGC
AGAGGATGGCGGTGGATACGGCAGCCGGCGTTTGGGGTGG
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