mRNA_H-paniculata_contig5668.13204.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5668.13204.1
Unique NamemRNA_H-paniculata_contig5668.13204.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5668.13204.1 vs. uniprot
Match: D7FQ61_ECTSI (Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ61_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 1.500e-70
Identity = 138/257 (53.70%), Postives = 171/257 (66.54%), Query Frame = 1 
Query:    1 AKANATVMDNAFTTSFSAMQAEVTKREEFAAADATARAAKVAAACTNVWNASRQGVPLRRLRELMELKMENSRRGAYTNRSEPFEQLCRRVEGFVVESRHPYTKGARQEQEVCIPDAKFFYVVFDAGSNTAAGAGNVSLLQPDDRDPANFYARGAYCGSINNGNEQAARLPGVDGEPPLRVNGSSVCVTFSASYWRGVATAGEDYGWRLVCFTVPENNGATSDDGGVVRDDNAKRAVVEAERAADRAEAVDAFNVLG 771
            A+A  T ++ AF+++FS++QA  ++++  AA     RA   A+ C+ VW+A+R GVP+R LRE+M  KM  SR     + SEPF+QLCRRVEG VVESRHPY KG RQ+ E  + +A  FYV FDA SN   G G V+L + + RDP  F+ RG Y  +++   E  ARLPGVDGE P+RV GSSV VTFSASYW GVA AGEDYGWRLVCFT  +             DD+AK  V EAERAADRAEAVDA N  G
Sbjct:    3 ARARETAIEAAFSSAFSSLQARRSEQKAAAACAEGERAELRASVCSTVWSAARYGVPVRTLREMMSEKMFQSRN---FDPSEPFDQLCRRVEGVVVESRHPYPKGVRQDIEAYVANADSFYVAFDAASNATIGMGKVALQEFNARDPKLFFPRGPY--NVDTSGE--ARLPGVDGERPMRVQGSSVLVTFSASYWTGVAPAGEDYGWRLVCFTADD-------------DDHAKALVSEAERAADRAEAVDAVNTHG 239
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BLAST of mRNA_H-paniculata_contig5668.13204.1 vs. uniprot
Match: A0A6H5KVI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI9_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.020e-32
Identity = 73/125 (58.40%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:  397 GAGNVSLLQPDDRDPANFYARGAYCGSINNGNEQAARLPGVDGEPPLRVNGSSVCVTFSASYWRGVATAGEDYGWRLVCFTVPENNGATSDDGGVVRDDNAKRAVVEAERAADRAEAVDAFNVLG 771
            G G V+L + + RDP  F+ RG Y G  ++     ARLPGVDGE P+RV GSSV VTFSASYW GVA AGEDYGWRLVCFT  +             DD+AK  V EA+RAADRAEAVDA N LG
Sbjct:    2 GMGKVALQEFNARDPKLFFPRGPYNGDTSS----EARLPGVDGERPMRVQGSSVLVTFSASYWTGVAPAGEDYGWRLVCFTADD-------------DDHAKALVSEAKRAADRAEAVDAVNTLG 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5668.13204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ61_ECTSI1.500e-7053.70Chain A, Crystal Structure Of The Bard1 Ankyrin Re... [more]
A0A6H5KVI9_9PHAE3.020e-3258.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5668contigH-paniculata_contig5668:372..2491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.9
Seed ortholog evalue1e-59
Seed eggNOG ortholog2880.D7FQ61
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size774
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5668.13204.1prot_H-paniculata_contig5668.13204.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5668 372..2470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930606.0865974-CDS-H-paniculata_contig5668:371..6871622930606.0865974-CDS-H-paniculata_contig5668:371..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5668 372..687 -
1691481369.2211256-CDS-H-paniculata_contig5668:371..6871691481369.2211256-CDS-H-paniculata_contig5668:371..687Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5668 372..687 -
1622930606.0990899-CDS-H-paniculata_contig5668:1172..13181622930606.0990899-CDS-H-paniculata_contig5668:1172..1318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5668 1173..1318 -
1691481369.2319446-CDS-H-paniculata_contig5668:1172..13181691481369.2319446-CDS-H-paniculata_contig5668:1172..1318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5668 1173..1318 -
1622930606.1138086-CDS-H-paniculata_contig5668:1854..19391622930606.1138086-CDS-H-paniculata_contig5668:1854..1939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5668 1855..1939 -
1691481369.248546-CDS-H-paniculata_contig5668:1854..19391691481369.248546-CDS-H-paniculata_contig5668:1854..1939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5668 1855..1939 -
1622930606.1297574-CDS-H-paniculata_contig5668:2264..24701622930606.1297574-CDS-H-paniculata_contig5668:2264..2470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5668 2265..2470 -
1691481369.2692595-CDS-H-paniculata_contig5668:2264..24701691481369.2692595-CDS-H-paniculata_contig5668:2264..2470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5668 2265..2470 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930606.1453242-UTR-H-paniculata_contig5668:2470..24911622930606.1453242-UTR-H-paniculata_contig5668:2470..2491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5668 2471..2491 -
1691481369.2798452-UTR-H-paniculata_contig5668:2470..24911691481369.2798452-UTR-H-paniculata_contig5668:2470..2491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5668 2471..2491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5668.13204.1

>prot_H-paniculata_contig5668.13204.1 ID=prot_H-paniculata_contig5668.13204.1|Name=mRNA_H-paniculata_contig5668.13204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=251bp
MDNAFTTSFSAMQAEVTKREEFAAADATARAAKVAAACTNVWNASRQGVP
LRRLRELMELKMENSRRGAYTNRSEPFEQLCRRVEGFVVESRHPYTKGAR
QEQEVCIPDAKFFYVVFDAGSNTAAGAGNVSLLQPDDRDPANFYARGAYC
GSINNGNEQAARLPGVDGEPPLRVNGSSVCVTFSASYWRGVATAGEDYGW
RLVCFTVPENNGATSDDGGVVRDDNAKRAVVEAERAADRAEAVDAFNVLG
*
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mRNA from alignment at H-paniculata_contig5668:372..2491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5668.13204.1 ID=mRNA_H-paniculata_contig5668.13204.1|Name=mRNA_H-paniculata_contig5668.13204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2120bp|location=Sequence derived from alignment at H-paniculata_contig5668:372..2491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAAGGCAAACGCTACAGTGATGGATAACGCATTCACAACTTCATTTTC
AGCCATGCAAGCCGAGGTGACCAAGCGGGAAGAGTTCGCCGCAGCTGATG
CAACAGCAAGGGCTGCAAAGGTGGCAGCAGCATGCACAAATGTGTGGAAT
GCCTCTCGGCAAGGCGTGCCGCTGCGACGGTTACGAGAGCTAATGGAGCT
AAAAATGGAAAACAGTAGGCGAGGGGCGTGACCGAACGGCGAGGTTATAG
CCAGTCAGGACTCGGTACTGTCATGAATCGGTCATCGACTATAGATACAT
TGGGTGTATCAATTTTGCGTTAGCGGGCGTTTCTAAAATTGACACGCATA
CTTGGTGCATGTGCAAAGGTAAACCTCACCGCGTGTACAGCTCTAGGTTC
ATATCTACTACCGACGTTGTTGAGCCTCGAATGATTGCGTTCAAAGGTAC
GTTGCCGGATTTTGCGATATGGATTGATCGCACACCCAATGGCACCCCTG
TCTTCCCAAGCCATCATCGCTCACATGCGCTCATTACCATCGTGCACGAC
AGGTACACCAATCGATCGGAGCCATTTGAGCAGCTCTGCCGCCGAGTGGA
GGGCTTTGTAGTAGAGAGTAGGCACCCTTACACGAAGGTGACCAGCGAAG
AAATTCATGAATTCGTCTTAACGGAGCGGGAGAGGCAAGGGGAGCGCGCG
TAGATGGGGAAAGTTGTGACTTCGTTGTTCATGCTCAGTAAACCACTCTG
TATATTGTTTTTGTACTTACTGATCGATCGAAATTTAGACGATATCATAG
ATGAATCGCAAATTGAAGAGGGCAGTTACCCTTTCTACTTGAACGGCCAA
GGTAGTTCAGAGGCATAGTATTATTCTTTCTATCTGCGTGTATATAGTAG
CAACACGTCTTTGCTGTCTATGGGGCGATCGAACTGCGTGCGCTTCCTTA
CTAGCAATATGAGCCGACAGAATATAGCTACTCTGCACATGGTGAACCTT
GACGTGCGACGGCGCCACAAAAATTTGCGAGCATCACGGCGAAGAACCCG
ATGTTTTTTACACCGTTTCTCTGTACCTGATCCTTCAACTGTTGCATCGA
GCTGTGGGTAGACTTCCATGTTGGTCGACCTTGCCCCATTTTCCATGCGG
TACTGTGCCATCTTGCGTGGCAGGGCGCTAGGCAAGAGCAGGAAGTATGT
ATACCTGACGCGAAGTTCTTTTACGTCGTTTTCGACGCGGGATCCAACAC
GGCAGCGGGGGCGGGTAATGTTTCGCTGCTACAGCCAGACGATAGAGATC
CGGCCAATTTCTATGCCAGGTACATGGTAATAAAAACAAGCCCCGAAACG
GCACCATTTTTTGTGCTTGCGGTTGCAGGACGGGATTTCCGAACGCGACA
ATTATTGCAGTGAGTATATTCCCTGAAGAAGTAGAGATGAGGTACGCTAA
TACGCAAGTCTTTCTTTGGCCAAGGTTTAACACGTTATCATTATTCAAAC
TCGCCCGAAACATGAGTATCTTATATACTCGAGAGCATGCAATCTATAGG
AATTAGAGGAGGGAATTTCATCGAGCTTGGAAAAGATGGAGTTATGTTTC
TGGCTGATCTATTTCTTTCCCCTCCACGGCATTTATATCTAACATCACCG
TGTTTTGTTCAAATATTTTGCCGGCGGAATTTTGTGGAAAGGCTACTCTG
ATTGTGTGTGAGAGAGTATCCGCCCCCCCCCCCCCCCTTCCTTCCCCCCG
GCCCCGACGACCCCCACCCTTTTTGTTCATCAACCTAAACACATTCGTAC
GCAGGGGTGCCTACTGTGGCAGCATCAACAATGGTAACGAACAAGCAGCT
CGGCTGCCCGGCGTAGATGGAGAGCCGCCGTTGCGTGTGAACGGTTCATC
TGTATGTGTGACATTCTCCGCCTCTTACTGGCGAGGGGTAGCAACTGCTG
GGGAGGACTACGGGTGGCGACTTGTTTGTTTCACTGTCCCTGAAAATAAC
GGTGCTACCAGCGATGATGGAGGTGTAGTGCGTGACGACAATGCAAAACG
TGCAGTTGTTGAGGCGGAGCGAGCGGCCGATCGCGCGGAGGCCGTAGACG
CCTTCAACGTCTTGGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5668:372..2491-

>mRNA_H-paniculata_contig5668.13204.1 ID=mRNA_H-paniculata_contig5668.13204.1|Name=mRNA_H-paniculata_contig5668.13204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig5668:372..2491- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATAACGCATTCACAACTTCATTTTCAGCCATGCAAGCCGAGGTGAC
CAAGCGGGAAGAGTTCGCCGCAGCTGATGCAACAGCAAGGGCTGCAAAGG
TGGCAGCAGCATGCACAAATGTGTGGAATGCCTCTCGGCAAGGCGTGCCG
CTGCGACGGTTACGAGAGCTAATGGAGCTAAAAATGGAAAACAGTAGGCG
AGGGGCATGGATAACGCATTCACAACTTCATTTTCAGCCATGCAAGCCGA
GGTGACCAAGCGGGAAGAGTTCGCCGCAGCTGATGCAACAGCAAGGGCTG
CAAAGGTGGCAGCAGCATGCACAAATGTGTGGAATGCCTCTCGGCAAGGC
GTGCCGCTGCGACGGTTACGAGAGCTAATGGAGCTAAAAATGGAAAACAG
TAGGCGAGGGGCGTACACCAATCGATCGGAGCCATTTGAGCAGCTCTGCC
GCCGAGTGGAGGGCTTTGTAGTAGAGAGTAGGCACCCTTACACGAAGGTA
CACCAATCGATCGGAGCCATTTGAGCAGCTCTGCCGCCGAGTGGAGGGCT
TTGTAGTAGAGAGTAGGCACCCTTACACGAAGGGCGCTAGGCAAGAGCAG
GAAGTATGTATACCTGACGCGAAGTTCTTTTACGTCGTTTTCGACGCGGG
ATCCAACACGGCAGCGGGGGCGGGTAATGTTTCGCTGCTACAGCCAGACG
ATAGAGATCCGGCCAATTTCTATGCCAGGGCGCTAGGCAAGAGCAGGAAG
TATGTATACCTGACGCGAAGTTCTTTTACGTCGTTTTCGACGCGGGATCC
AACACGGCAGCGGGGGCGGGTAATGTTTCGCTGCTACAGCCAGACGATAG
AGATCCGGCCAATTTCTATGCCAGGGGTGCCTACTGTGGCAGCATCAACA
ATGGTAACGAACAAGCAGCTCGGCTGCCCGGCGTAGATGGAGAGCCGCCG
TTGCGTGTGAACGGTTCATCTGTATGTGTGACATTCTCCGCCTCTTACTG
GCGAGGGGTAGCAACTGCTGGGGAGGACTACGGGTGGCGACTTGTTTGTT
TCACTGTCCCTGAAAATAACGGTGCTACCAGCGATGATGGAGGTGTAGTG
CGTGACGACAATGCAAAACGTGCAGTTGTTGAGGCGGAGCGAGCGGCCGA
TCGCGCGGAGGCCGTAGACGCCTTCAACGTCTTGGGGTAAGGGTGCCTAC
TGTGGCAGCATCAACAATGGTAACGAACAAGCAGCTCGGCTGCCCGGCGT
AGATGGAGAGCCGCCGTTGCGTGTGAACGGTTCATCTGTATGTGTGACAT
TCTCCGCCTCTTACTGGCGAGGGGTAGCAACTGCTGGGGAGGACTACGGG
TGGCGACTTGTTTGTTTCACTGTCCCTGAAAATAACGGTGCTACCAGCGA
TGATGGAGGTGTAGTGCGTGACGACAATGCAAAACGTGCAGTTGTTGAGG
CGGAGCGAGCGGCCGATCGCGCGGAGGCCGTAGACGCCTTCAACGTCTTG
GGGTAA
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