mRNA_H-paniculata_contig5667.13203.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5667.13203.1
Unique NamemRNA_H-paniculata_contig5667.13203.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: D8LNX2_ECTSI (Protein phosphatase 2C containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX2_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 3.980e-162
Identity = 227/262 (86.64%), Postives = 243/262 (92.75%), Query Frame = 1
Query:    1 MKEQFSGGAVRLFVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDLRTCPVDCSSSGATLVLTIIRGGKITVANLGDSKCVLARLVNGQLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEIDANDQFLILATDGVWDVTEIGHAVQIVQGYAARSRGNAWDPQGAASLLAHTARKRWEGLSAVVDDITAMVVKL 786
            MKE   G  VRLFVVLDGHGELGHLVSRRC+  LP  V+DS L VARAT RMADDLR+CPVDC+SSGAT VLT IR GKI+VANLGDSKCVLARLVNGQ+CAVPLS DHKPDRPDERQRILA+GGQVGSRHLVVGS+PSGPIRIPMGPARVWYRC+GEIMGLAMSRSLGDDIAH+AGVSSEPEV EH+IDANDQFLILATDGVWDVTEIG AVQIVQGYA+R RGN+WDPQGAASLLAH+ARKRWEGLSAVVDDITA+VV+L
Sbjct:   18 MKEDLGGLGVRLFVVLDGHGELGHLVSRRCSAKLPNLVVDSNLCVARATLRMADDLRSCPVDCASSGATCVLTTIRDGKISVANLGDSKCVLARLVNGQVCAVPLSHDHKPDRPDERQRILAIGGQVGSRHLVVGSNPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVKEHQIDANDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGNSWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRL 279          
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: A0A835YTT3_9STRA (Phosphatase 2C-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT3_9STRA)

HSP 1 Score: 295 bits (754), Expect = 5.370e-96
Identity = 160/279 (57.35%), Postives = 192/279 (68.82%), Query Frame = 1
Query:   19 GGAVRLFVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDLRT-CPVDCSSSGAT-LVLTIIRGGKITVANLGDSKCVLARLVNG-------------------QLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEH--EIDANDQFLILATDGVWDVTEIGHAVQIVQGYAARSRGNAWDPQGAASLLAHTARKRWEGLSAVVDDITAMVVKL 786
            G  +R+F VLDGHGE GHLV+RRC E LP  +  +    ARA   + +DL +   VDC  SGAT +V+TI   G +TVANLGDS+CVL R   G                   Q+CAVPL+ DHKPDRPDER RI A GGQVGSR L+VGS P+GPIRIPMGPARVWY+ +GE MGLAMSRS+GD IAH AGVS++PEV+EH  + DA D FL+LA+DGVWDV +   AV IV   AA + G  WDP+ AA      ARKRW+GLS ++DDITA+VVKL
Sbjct:   77 GDRLRVFAVLDGHGEAGHLVTRRCRERLPQLLRAARGDAARACVALHEDLASGVHVDCQCSGATCVVVTISARGAVTVANLGDSRCVLGRWECGGXXXXXXXXXXXMVGRAQRQVCAVPLTTDHKPDRPDERARIQAAGGQVGSRQLIVGSGPAGPIRIPMGPARVWYQVRGETMGLAMSRSIGDVIAHAAGVSAQPEVVEHCLDRDAGDAFLVLASDGVWDVLDAQAAVHIVAACAAAAGGAEWDPREAAXXXXXAARKRWDGLSPMIDDITALVVKL 355          
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: A0A7S4D964_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D964_HETAK)

HSP 1 Score: 283 bits (724), Expect = 4.420e-92
Identity = 139/252 (55.16%), Postives = 182/252 (72.22%), Query Frame = 1
Query:   34 LFVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDL-RTCPVDCSSSGATLVLTIIRGGKITVANLGDSKCVLARLVNGQLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEIDANDQFLILATDGVWDVTEIGHAVQIVQGYAARSRGNAWDPQGAASLLAHTARKRWEGLSAVVDDITAMVVKL 786
            +F VLDGHG+ GHLVS +C E LP    ++   ++R    M  +L ++  +D   SGAT V+ ++ G ++TV NLGDSK VL R VNG     PL+ DHKPDRPDERQRIL  GG+VG R LVVG+ P+GP+R+PMGP R+WY+ +GE MGLAMSRSLGD I H  GVS++PE+ EH +D  D FL+L +DG+WDVT++  AVQIVQG   ++  + WDP+ AA  LA +AR+RWE +S +VDDITA+VVKL
Sbjct:   59 MFCVLDGHGQQGHLVSTQCRERLPQLYRETGNDLSRTCLAMQAELEKSTAMDVKCSGATCVICVVEGRRLTVGNLGDSKAVLGRRVNGVTLPHPLTNDHKPDRPDERQRILQAGGKVGCRQLVVGNGPNGPVRLPMGPMRIWYQVRGETMGLAMSRSLGDGIVHALGVSADPELTEHLLDGEDLFLLLGSDGIWDVTDLNQAVQIVQGVVNKNP-HGWDPREAAEELAVSARRRWESMSQMVDDITAIVVKL 309          
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: A0A7S2WTT9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT9_9STRA)

HSP 1 Score: 270 bits (689), Expect = 3.910e-85
Identity = 141/264 (53.41%), Postives = 178/264 (67.42%), Query Frame = 1
Query:   10 QFSGGAVRLFV--VLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDLRTCPVDCSSSGATLVLTIIRGGKITVANLGDSKCVLARLVNGQLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEIDANDQFLILATDGVWDVTEIGHAVQIVQGYAARSRGNA---WDPQGAASLLAHTARKRWEGLSAVVDDITAMVVKL 786
            + SGG   L    V DGHGE GHLVSR   E L    ++ + + +RA  +M  +L    VD   SGAT V+ ++RG  I V N GDS+ VL R  NG + A+ L+ DHKPDRPDER+R++  GGQVGSR LVVG + +GP+ +P+GP RVWY+ +GE MGLAMSRSLGD IAH  GVSSEPEV EH + + D F+ILA+DG+WDV E   AVQIV  + AR+  +    WD   AA +L  TAR+RWE LS +VDDITA+VV L
Sbjct:  168 EHSGGESDLHAWGVFDGHGEFGHLVSRIIRERLGKIWLECSQNFSRAFWQMQSELDKSSVDARCSGATCVMVVLRGNTIQVGNCGDSRAVLGRRSNGTISALQLTSDHKPDRPDERRRVMQAGGQVGSRQLVVGHNANGPVTLPLGPPRVWYQIRGETMGLAMSRSLGDGIAHSNGVSSEPEVTEHAVSSTDVFVILASDGIWDVIETNQAVQIVGNHFARATASGSTQWDVVDAAMVLTTTARRRWESLSPMVDDITAVVVDL 431          
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: A0A7S1U9X7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9X7_9STRA)

HSP 1 Score: 264 bits (675), Expect = 3.460e-81
Identity = 140/284 (49.30%), Postives = 177/284 (62.32%), Query Frame = 1
Query:   34 LFVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDLRTCPVDCSSSGATLVLTII------RGGKIT--VANLGDSKCVLARLVNGQLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEIDANDQFLILATDGVWDVTEIGHAVQIVQGYAARSRGNA-------------------------WDPQGAASLLAHTARKRWEGLSAVVDDITAMVVKL 786
            LF V DGHGE GHLVSR+C E +P  ++ + L +  A     D  ++C VDCS SGAT V+ II      RGG  T  + N GDS+ V+AR+VN  +  V L++DHKPDRPDER+RI A+GG+VG+R +VVG  P+G I +P+GPAR+WY C+GE MGLAMSRSLGD IAH+ G S EPE+    +   D FL+LATDGVWDV +   AV I       +R  A                         WDP+ AA  +  TAR+RWE LSA+VDDIT +VVKL
Sbjct:  316 LFAVFDGHGEFGHLVSRKCREEMPQRLISNRLDMGAAFDEAQDHFKSCEVDCSCSGATAVVIIIDNATRGRGGSSTLRIGNCGDSRAVVARVVNNTITGVTLTKDHKPDRPDERRRITAMGGKVGTRQVVVGHGPNGAITMPVGPARIWYNCRGETMGLAMSRSLGDLIAHRVGGSHEPEMTMRNLQEEDMFLLLATDGVWDVLDANAAVDIAFEVMMEAREEAGLGPKRVPMGGAAAGFSSEEWRSIPWDPEVAAKRICTTARRRWENLSAMVDDITCVVVKL 599          
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: A0A482S1K4_9ARCH (Protein serine/threonine phosphatase 2C family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1K4_9ARCH)

HSP 1 Score: 258 bits (660), Expect = 9.210e-81
Identity = 128/256 (50.00%), Postives = 176/256 (68.75%), Query Frame = 1
Query:   28 VRLFVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDLRTCPVDCSSSGATLVLTIIRGGKITVANLGDSKCVLARL-VNGQLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEIDANDQFLILATDGVWDVTEIGHAVQIVQGYAARSRGNAWDPQGAASLLAHTARKRWEGLSAVVDDITAMVVKLNQ 792
            +R++ VLDGHGE GH+VS+RC E  P  +  +   V  A + M +DL +  +D   SGAT V+  +   ++TV N GDS+ VL R   +G + A PLS DHKPD+P+ER+RIL  GG +G R ++V     GP+ +P+GP RVWY+ +GE +GLAMSRSLGD I HK GV++EPE+ EH+ID +D+F+ILATDGVWDV +  HAVQ+V G A+RS    W    A++ +   AR RWE LS +VDDIT +VVK+++
Sbjct:  183 LRVYCVLDGHGEHGHIVSKRCRENFPHFLKSTNWQVEAAFNMMQNDLTSSEIDVRCSGATCVIACVSNNRLTVYNCGDSRAVLGRRSASGAIAAYPLSNDHKPDKPEERKRILGCGGHLGCRQVLVNQGNRGPVSMPVGPCRVWYQHRGETLGLAMSRSLGDSIVHKVGVTAEPELTEHQIDDHDEFIILATDGVWDVVDNNHAVQMVFGVASRSVN--WSVLEASNAVCRFARSRWEKLSPMVDDITCVVVKIHR 436          
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: A0A7S3ZZR6_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZR6_9STRA)

HSP 1 Score: 256 bits (655), Expect = 5.190e-80
Identity = 133/258 (51.55%), Postives = 171/258 (66.28%), Query Frame = 1
Query:   31 RLFVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDLRTCPVDCSSSGATLVLTIIRGGKITVANLGDSKCVLARLVNGQLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYR---CQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEIDANDQFLILATDGVWDVTEIGHAVQIVQGYAARSRGNAWDPQGAASLLAHTARKRWEGLSAVVDDITAMVVKLNQS 795
            R + VLDGHGE+GHLVS+RC++ L    + S L ++ A   M +DL  C +D   SGAT V   +    + VAN+GDS+ VL  L    +CA PL+ DHKPDR DE+ RI+A GGQV  R LVVG S +GPI +P+GP RVWYR     G+ MGLAMSRS GD IAH  GVS EPE+ ++ +D  D+FLI ATDGVWDV +   AV+IV  +    R N WDP  AA  L  +AR RW+ LS ++DDITA+VV L+++
Sbjct:  158 RCYGVLDGHGEIGHLVSKRCSQQLCEHFVKSQLDMSLAFRLMQEDLSQCELDIKCSGATCVFVHLHDSYLRVANIGDSRGVLGHLDGANICATPLTSDHKPDRHDEQIRIVACGGQVSCRQLVVGHSSNGPITLPLGPPRVWYRRNSSHGDTMGLAMSRSFGDAIAHGLGVSCEPEITQYNLDLADKFLICATDGVWDVIDNAQAVKIV--HTLYERSNDWDPLEAAHTLCISARNRWQSLSPMIDDITALVVDLHRA 413          
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: A0A7S2CMF9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMF9_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.910e-71
Identity = 123/256 (48.05%), Postives = 167/256 (65.23%), Query Frame = 1
Query:   37 FVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDLRTCPVDCSSSGATLVLTIIRGGKITVANLGDSKCVLARLVNG--QLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEIDANDQFLILATDGVWDVTEIGHAVQIVQGY---AARSRGNAWDPQGAASLLAHTARKRWEGLSAVVDDITAMVVKLN 789
            ++V DGHG+ GHLVS+   E +    +D+   +      M   L    VD  SSG+T V+ ++    + VAN GDS+ VL ++VN   QL  + L++DHKPDRPDER R+   GGQVG R +++    S  +R+P+GPARVWY  +GE  GLAMSRSLGD I H  GVS EPEV +  +D  ++F+I+ATDG+WDV    H VQIV  +   AARS  + W+PQ AA +L  TAR+RWEG+S +VDDITA+V+ L+
Sbjct:  202 WIVFDGHGDRGHLVSKFGREKMGKTWIDNKFRLRETFLSMQQQLNKSSVDVRSSGSTCVMVVLDNDCLKVANCGDSRAVLGKVVNSSSQLATIVLTDDHKPDRPDERMRVEKAGGQVGCRQMLMNRGSS--VRVPLGPARVWYTNRGETTGLAMSRSLGDAIVHTFGVSEEPEVTQRTLDKTERFIIVATDGIWDVLHSSHVVQIVDKHFNEAARSN-SPWNPQDAAMVLCLTARRRWEGMSTMVDDITAVVIDLS 454          
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: A0A7S2XVV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV9_9STRA)

HSP 1 Score: 214 bits (546), Expect = 2.070e-65
Identity = 110/191 (57.59%), Postives = 135/191 (70.68%), Query Frame = 1
Query:    1 MKEQFSG-GAVRLFVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDLRTCP-VDCSSSGATLVLTIIRGGKITVANLGDSKCVLARLVNGQLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEI 567
            ++E+  G G    + VLDGHG+ GHLVS    E L     +    V+RA  RM +DL T P +D   SGAT V+ I+RG  + V NLGDS+CVLAR VNG L  V LS DHKPDRPDERQRILA GG+VG R LVVG+ PSGP+R+PMGP R+WY+ +GE MGLAMSRSLGD I H  GVS++PE+ EH++
Sbjct:  103 LEERCGGSGDEGFYCVLDGHGQQGHLVSGYIRENLVRHYSECGQDVSRACLRMQEDLDTTPTLDTKCSGATCVIAILRGRSLLVGNLGDSRCVLARRVNGVLSPVALSNDHKPDRPDERQRILAAGGKVGCRQLVVGNGPSGPVRLPMGPMRIWYQVRGETMGLAMSRSLGDSIVHTQGVSADPELKEHQV 293          
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Match: A0A7S2NWU1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWU1_9STRA)

HSP 1 Score: 187 bits (476), Expect = 5.950e-54
Identity = 103/262 (39.31%), Postives = 152/262 (58.02%), Query Frame = 1
Query:   22 GAVRLFVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATHRMADDLRTCPVDCSSSGATLVLTIIRGGK-ITVANLGDSKCV-LARLVNGQLCAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEIDANDQFLILATDGVWDV---TEIGHAVQI-VQGYAARSRGNAWDPQGAASLLAHTARKRWEGLSAV-VDDITAMVVKL 786
            G+  +++V DGHG  GH+VS+ C  +LP  + ++     RA   +  DL +  +D   SG T V  I++  + I V N+GDS+ + L R  N  L A+PLS DHKP + DER+RIL  GG++ S+H   G            P+RVW+      MGLAMSRS+GD+ AH+ GVS EP++  H+I+  D  ++LA+DG+WDV    E+ H +Q  + G  A      W+ + AA  L   AR RWE +S   +DD+T +V+K+
Sbjct:  119 GSPSVYMVFDGHGRFGHVVSKHCKAVLPKILAETGYDQERAISVLQSDLESSAIDIECSGCTCVTAIVKQNRTIEVGNVGDSRAIILQRSPNNTLKALPLSIDHKPSQLDERKRILETGGRIASKHCSAG------------PSRVWFEYNNTTMGLAMSRSVGDEFAHRVGVSHEPQIFHHKIEPQDTCIVLASDGLWDVYSNDEVAHLIQTCINGNYAD-----WNAKIAAVFLTKMARMRWEHISTEHIDDVTCLVIKI 363          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5667.13203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX2_ECTSI3.980e-16286.64Protein phosphatase 2C containing protein n=1 Tax=... [more]
A0A835YTT3_9STRA5.370e-9657.35Phosphatase 2C-containing protein n=1 Tax=Tribonem... [more]
A0A7S4D964_HETAK4.420e-9255.16Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2WTT9_9STRA3.910e-8553.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1U9X7_9STRA3.460e-8149.30Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A482S1K4_9ARCH9.210e-8150.00Protein serine/threonine phosphatase 2C family pro... [more]
A0A7S3ZZR6_9STRA5.190e-8051.55Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]
A0A7S2CMF9_9STRA1.910e-7148.05Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XVV9_9STRA2.070e-6557.59Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2NWU1_9STRA5.950e-5439.31Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5667contigH-paniculata_contig5667:7747..11401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score463.8
Seed ortholog evalue5.5e-128
Seed eggNOG ortholog2880.D8LNX2
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-08_005490.1
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Exons6
Model size798
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5667.13203.1prot_H-paniculata_contig5667.13203.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5667 7747..11401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930605.9417806-CDS-H-paniculata_contig5667:7746..78091622930605.9417806-CDS-H-paniculata_contig5667:7746..7809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 7747..7809 +
1691481369.1433501-CDS-H-paniculata_contig5667:7746..78091691481369.1433501-CDS-H-paniculata_contig5667:7746..7809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 7747..7809 +
1622930605.9754603-CDS-H-paniculata_contig5667:8437..86111622930605.9754603-CDS-H-paniculata_contig5667:8437..8611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 8438..8611 +
1691481369.1574557-CDS-H-paniculata_contig5667:8437..86111691481369.1574557-CDS-H-paniculata_contig5667:8437..8611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 8438..8611 +
1622930605.9940536-CDS-H-paniculata_contig5667:9139..92801622930605.9940536-CDS-H-paniculata_contig5667:9139..9280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 9140..9280 +
1691481369.1676247-CDS-H-paniculata_contig5667:9139..92801691481369.1676247-CDS-H-paniculata_contig5667:9139..9280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 9140..9280 +
1622930606.0099812-CDS-H-paniculata_contig5667:9921..101251622930606.0099812-CDS-H-paniculata_contig5667:9921..10125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 9922..10125 +
1691481369.1829073-CDS-H-paniculata_contig5667:9921..101251691481369.1829073-CDS-H-paniculata_contig5667:9921..10125Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 9922..10125 +
1622930606.0216975-CDS-H-paniculata_contig5667:10678..107471622930606.0216975-CDS-H-paniculata_contig5667:10678..10747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 10679..10747 +
1691481369.1942556-CDS-H-paniculata_contig5667:10678..107471691481369.1942556-CDS-H-paniculata_contig5667:10678..10747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 10679..10747 +
1622930606.0391896-CDS-H-paniculata_contig5667:11254..114011622930606.0391896-CDS-H-paniculata_contig5667:11254..11401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 11255..11401 +
1691481369.2030654-CDS-H-paniculata_contig5667:11254..114011691481369.2030654-CDS-H-paniculata_contig5667:11254..11401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5667 11255..11401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5667.13203.1

>prot_H-paniculata_contig5667.13203.1 ID=prot_H-paniculata_contig5667.13203.1|Name=mRNA_H-paniculata_contig5667.13203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=266bp
MKEQFSGGAVRLFVVLDGHGELGHLVSRRCAELLPTAVMDSALSVARATH
RMADDLRTCPVDCSSSGATLVLTIIRGGKITVANLGDSKCVLARLVNGQL
CAVPLSEDHKPDRPDERQRILAVGGQVGSRHLVVGSSPSGPIRIPMGPAR
VWYRCQGEIMGLAMSRSLGDDIAHKAGVSSEPEVMEHEIDANDQFLILAT
DGVWDVTEIGHAVQIVQGYAARSRGNAWDPQGAASLLAHTARKRWEGLSA
VVDDITAMVVKLNQS*
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mRNA from alignment at H-paniculata_contig5667:7747..11401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5667.13203.1 ID=mRNA_H-paniculata_contig5667.13203.1|Name=mRNA_H-paniculata_contig5667.13203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3655bp|location=Sequence derived from alignment at H-paniculata_contig5667:7747..11401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGAGCAGTTCAGCGGGGGAGCCGTTCGTTTATTCGTGGTGCTGGA CGGTCATGGGGAGGTGAAGTATCTCCCATGAAAATATGCATACATCGCGT TTGCCTGACGCTCCCAATAACAGTGGGATGAGTTTTCCTCTCAGAGTCAG AGGTTCCGCTGAGACTTGTTGATCACTAGTGCAAGAACACCTGGATTTAC CCGTCGGTTGTCTGATGACACGTCTATTGGAACCTCCCCATACCCTATGA AATCTCTCACTCCGAGGGCGTTTGTGCTCTTATCCTCAGTGGAAGTGTGG TCAATATCTTTGCAGAAGTTAAGGAACCCAACATATAGTCGAGTAAAAAT AGTATCCTACGCCTCTACGTCAACCGTCTCACGTTCGAGTAATCATATTC TGGGACGGGTTGATATCGCAAACGCAGTCGACATGTTTGCGCCCTCTCCC GCATGCACTGCCCGCATTCCGTTGAGTGTTGAGCACATCGTGGTATTCGA ATAACTAGCGGCTTGCGGTGAAGGTGTTAGCTCTTGATCGTGGGGGATAA ATGCGAGCTGTTATGTATCGTGCACCCGCTCGACCTACCCCCCTCGATAT ATGTTGTGAAAGCTCGCATTCCCTGTTCCTTCATGATAAATAATCGTCTT TGTCCATCGATCGTCTGTTCATTTGTGTATTATTGTGTCAGTTGGGACAC CTAGTGAGTCGACGATGTGCGGAGCTCCTTCCCACAGCAGTAATGGATTC AGCGCTAAGTGTGGCGAGGGCGACTCATAGGATGGCTGACGACCTTCGAA CATGTCCGGTGGACTGTTCGTCGAGCGGGGCTACCTTAGTGTTAACTATT ATACGGGGGGGAAAGGTGAGGGTCCCAAACCATAGCCCGCACCAATATCG CATCGCATTGGTTGGTGTCAAGTTCCCGTGTGGAGATATGTGTCCAGGTT TGCGGAGATGGCGTAACGTGCCTCGTATGGGTTCCTACGCACATCTTCAA TGGTATAATCACGCACAAGGCCAAGTCATGCAGACGTTCGGATCGCTTCT GCGCGACGATACCCTTGGGGTTCGGTGTCTTGCGCAAGGTATTGGCGGAG GACAACAAAGATGAAATTCCCTAGCTACAAGGAGGACGCATGATGATGAA GCGGCTACCGCAGTCTCTGTCGGGCAATTTGGGGCATCGATAACTTCGTT TACCTCAAGCATAAGAGGAACGACATGCGCCCAGCAGACAGCCATCGCAT GTCAAGCAATGTGAAGGTTGGCTTCGGTTGCCTAGATGATTGGCCTACGT AACCACATGGCACAAAAACAGCTCTTCTCTCCGATCCGATACGCCTGCGT TATGTCATCGTGTTTATCAACGTGTTACCTTCCGACTCCTAAGATCACTG TAGCTAATCTGGGGGACTCTAAGTGTGTATTGGCGCGGCTTGTGAACGGC CAGCTTTGCGCAGTGCCACTATCCGAAGATCATAAACCGGATCGACCAGA CGAGCGGCAACGGATACTCGCCGTCGGTGGGCAGGTAACGCTCAAAGACA CAAGAGTTATGATGAACTTCGCTTGCGATGACTCAAGTAGGCAAATCTGG GCAATAGAAGCTTGCACAAAATGCCATAGCTTGTTGGCATGAAGGCTACC TTAAACATGGAGTAGCCGAGAAATATCCAGAGAAACACGAATAATCGTTG GACGGATGGTGCTTGTCCCATGACTTCTGATAATTGTTTCCGTCACTGGA ATACCTAATGGGAGTATCCATTTGCAGTTGCGGATAAATGAAGCCCTACA AACTAATCATTGTGTACGCCTGTCTTACGTGCCAACTTGCACACACCTGC AGATAAGGTGACCAGACCAAACACCCAGGGATGGGAGCAATAGACTACAA AGTGCCGGATGCATTCAGTTTGCGTGTCCCAGAATCTCCTCAACGGCAAT TTCGAAGGGATTAGCAGATTCACCAAGATCGCTGAATGACTGACATATAT GTGGCGGGGCTAGGTCGAATACAACAACTCCTGAAAAAACCCAGCCCGAT ATTGTTTCAAGGCAGATGGCCCAGCACGTTTGCTGTCGGCAATATTACGC TTCACATGGAGATGTTCTCCGCTTCTTGAATGCCGTCTTAAGAATCACTA AATTCCAAGCCTTTGAAAATTATAGGTGGGATCACGACATCTTGTGGTCG GCTCGAGCCCGTCTGGTCCCATTCGTATTCCGATGGGTCCGGCGCGGGTT TGGTATCGTTGTCAAGGCGAAATAATGGGCTTGGCGATGAGTCGAAGCCT CGGAGACGATATAGCGCACAAAGCTGGGGTTTCCTCGGAGCCCGAGGTTA TGGAGCATGAAATCGACGCCAACGATCAGGTAAAAATATACGTGAATTCA CGAGTACGTGAACAGAGATACACGCTGGCAATCTTGTGTGATGTCTGATG CACTTGCTGGACGCCACCCTGATTGAACATTATTATCATGTATCTAAAAA GCACAATTTCATCGGGACATGACGACAGAAGATCGACCTAGCAGTGATTC GTTTGCAACAGTTCCAGCGAGTGAATACCCCGCACGAAATAACTCGATTC GTTTGATTCGAAGAGATATGGCACTTGCTCGATGGTCGTGGAATACAACC GTTCGTATGGCAGAATATGTCGATTCGGTGACGCTTGTTGCTGGATTATC AAGCACGTGTTCGCCGTTTCGCCTACAACTTCAGCATTGGTCACGCCCCA TCTGCCTCAGTAGCGCAGTACTTTGCTGTCTTTGCTCCCCGACAGTGCCT CTGTCGGATGCGACCGTTACTTACGCCAATACAACAGTTCTATATATCTA CAGGGGGGAGGAACACCTCGCGAAACGTCGTATTTTCTCTTTATGTTACC CTTTGTTCTCTCGCTTTTTCGTTTTTGCGCAGTTTCTGATCTTGGCAACG GATGGAGTGTGGGATGTGACCGAGATCGGACACGCGGTTCAAATAGTGCA GGTAGGGGTGGAACATGACTGAGGGAGATGGGTATCGCCTTACATACATG ACGAGCCTGTAGTAATCCAATAATCACGTATTTTTCGTGGCGATATCGGG TTTATTAAGAGGTGCCGACTGCGTGCACGGCGATAGGTAGACCTCGTAGA GTCAGCGCTGACTCTATGGCCTAGTGAAGCGCATTCTCTAAGATGAGGTC AAATACATTCGTTTCTTTTGACTGGTAGCTGCCCCCCCCTTCGAGTAAAA CCACCTAACGCCTTAACAATAGACCCCAGAAGAGCGAAATGTTAGTACAT CGAAAGCCCACTAAAAAGCACATCATCAGCAAGCAAAATAACAAAAATCA ATACACTACGGCCAGGATGGTTCGATAAATCAACCCAAGTTGTCGACAGC ATCGCGCCATTGTACGAAGATAAAAGAAGAAATGCAGCAACTACTCATCG ATATAGGTCCAAATTCAGATTTCGGTCTCCTCCCTGAACACATTCCGCTA CACTTCAGGGATACGCAGCGCGGAGTCGTGGAAACGCATGGGATCCCCAG GGAGCTGCCTCGCTCCTTGCGCACACCGCTCGCAAGCGCTGGGAAGGCTT ATCAGCTGTTGTAGATGACATTACTGCTATGGTTGTAAAGCTCAATCAGT CGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5667:7747..11401+

>mRNA_H-paniculata_contig5667.13203.1 ID=mRNA_H-paniculata_contig5667.13203.1|Name=mRNA_H-paniculata_contig5667.13203.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at H-paniculata_contig5667:7747..11401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGAGCAGTTCAGCGGGGGAGCCGTTCGTTTATTCGTGGTGCTGGA
CGGTCATGGGGAGATGAAAGAGCAGTTCAGCGGGGGAGCCGTTCGTTTAT
TCGTGGTGCTGGACGGTCATGGGGAGTTGGGACACCTAGTGAGTCGACGA
TGTGCGGAGCTCCTTCCCACAGCAGTAATGGATTCAGCGCTAAGTGTGGC
GAGGGCGACTCATAGGATGGCTGACGACCTTCGAACATGTCCGGTGGACT
GTTCGTCGAGCGGGGCTACCTTAGTGTTAACTATTATACGGGGGGGAAAG
TTGGGACACCTAGTGAGTCGACGATGTGCGGAGCTCCTTCCCACAGCAGT
AATGGATTCAGCGCTAAGTGTGGCGAGGGCGACTCATAGGATGGCTGACG
ACCTTCGAACATGTCCGGTGGACTGTTCGTCGAGCGGGGCTACCTTAGTG
TTAACTATTATACGGGGGGGAAAGATCACTGTAGCTAATCTGGGGGACTC
TAAGTGTGTATTGGCGCGGCTTGTGAACGGCCAGCTTTGCGCAGTGCCAC
TATCCGAAGATCATAAACCGGATCGACCAGACGAGCGGCAACGGATACTC
GCCGTCGGTGGGCAGATCACTGTAGCTAATCTGGGGGACTCTAAGTGTGT
ATTGGCGCGGCTTGTGAACGGCCAGCTTTGCGCAGTGCCACTATCCGAAG
ATCATAAACCGGATCGACCAGACGAGCGGCAACGGATACTCGCCGTCGGT
GGGCAGGTGGGATCACGACATCTTGTGGTCGGCTCGAGCCCGTCTGGTCC
CATTCGTATTCCGATGGGTCCGGCGCGGGTTTGGTATCGTTGTCAAGGCG
AAATAATGGGCTTGGCGATGAGTCGAAGCCTCGGAGACGATATAGCGCAC
AAAGCTGGGGTTTCCTCGGAGCCCGAGGTTATGGAGCATGAAATCGACGC
CAACGATCAGGTGGGATCACGACATCTTGTGGTCGGCTCGAGCCCGTCTG
GTCCCATTCGTATTCCGATGGGTCCGGCGCGGGTTTGGTATCGTTGTCAA
GGCGAAATAATGGGCTTGGCGATGAGTCGAAGCCTCGGAGACGATATAGC
GCACAAAGCTGGGGTTTCCTCGGAGCCCGAGGTTATGGAGCATGAAATCG
ACGCCAACGATCAGTTTCTGATCTTGGCAACGGATGGAGTGTGGGATGTG
ACCGAGATCGGACACGCGGTTCAAATAGTGCAGTTTCTGATCTTGGCAAC
GGATGGAGTGTGGGATGTGACCGAGATCGGACACGCGGTTCAAATAGTGC
AGGGATACGCAGCGCGGAGTCGTGGAAACGCATGGGATCCCCAGGGAGCT
GCCTCGCTCCTTGCGCACACCGCTCGCAAGCGCTGGGAAGGCTTATCAGC
TGTTGTAGATGACATTACTGCTATGGTTGTAAAGCTCAATCAGTCGTGAG
GATACGCAGCGCGGAGTCGTGGAAACGCATGGGATCCCCAGGGAGCTGCC
TCGCTCCTTGCGCACACCGCTCGCAAGCGCTGGGAAGGCTTATCAGCTGT
TGTAGATGACATTACTGCTATGGTTGTAAAGCTCAATCAGTCGTGA
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