mRNA_H-paniculata_contig56659.13201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56659.13201.1
Unique NamemRNA_H-paniculata_contig56659.13201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig56659.13201.1 vs. uniprot
Match: D8LC56_ECTSI (Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC56_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 8.450e-6
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   31 SYGQDQYGFSTVGANCVFNYSHTHEFGHNMGAHHDRDHSAWSA---EYSHGMRYCE 189
            S G  QYG+S V  NC+ N+SH HE GHN GA+H+++++  S     Y++  R CE
Sbjct:  331 SSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENAGGSDGVDAYNYAYRNCE 386
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BLAST of mRNA_H-paniculata_contig56659.13201.1 vs. uniprot
Match: A0A6H5JDN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN0_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 2.960e-5
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:   31 SYGQDQYGFSTVGANCVFNYSHTHEFGHNMGAHHDRDHSAWSA---EYSHGMRYCE 189
            S G  QYG+S V  NC+ N+SH HE GHN GA+H++++   S     Y++  R C+
Sbjct:  323 SSGFAQYGYSVVHTNCLSNFSHIHELGHNFGANHNKENVGGSGGVDAYNYAYRNCD 378
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56659.13201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC56_ECTSI8.450e-644.64Peptidyl-Asp metalloendopeptidase n=1 Tax=Ectocarp... [more]
A0A6H5JDN0_9PHAE2.960e-542.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56659contigH-paniculata_contig56659:587..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930605.6496782-CDS-H-paniculata_contig56659:586..7901622930605.6496782-CDS-H-paniculata_contig56659:586..790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56659 587..790 +
1691481369.021532-CDS-H-paniculata_contig56659:586..7901691481369.021532-CDS-H-paniculata_contig56659:586..790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56659 587..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56659.13201.1prot_H-paniculata_contig56659.13201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56659 587..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56659.13201.1

>prot_H-paniculata_contig56659.13201.1 ID=prot_H-paniculata_contig56659.13201.1|Name=mRNA_H-paniculata_contig56659.13201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
LSHCSGRWLYSYGQDQYGFSTVGANCVFNYSHTHEFGHNMGAHHDRDHSA
WSAEYSHGMRYCEGDDP*
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mRNA from alignment at H-paniculata_contig56659:587..790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56659.13201.1 ID=mRNA_H-paniculata_contig56659.13201.1|Name=mRNA_H-paniculata_contig56659.13201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig56659:587..790+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTCACACTGTTCTGGCAGGTGGCTCTACTCGTATGGCCAAGACCAGTA
TGGCTTCTCCACAGTAGGAGCCAACTGCGTTTTCAACTACAGCCACACTC
ATGAGTTCGGCCATAACATGGGAGCACACCATGACCGTGACCACAGCGCC
TGGAGCGCGGAGTACTCGCACGGAATGCGATATTGCGAGGGCGATGACCC
ATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig56659:587..790+

>mRNA_H-paniculata_contig56659.13201.1 ID=mRNA_H-paniculata_contig56659.13201.1|Name=mRNA_H-paniculata_contig56659.13201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig56659:587..790+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTCACACTGTTCTGGCAGGTGGCTCTACTCGTATGGCCAAGACCAGTA
TGGCTTCTCCACAGTAGGAGCCAACTGCGTTTTCAACTACAGCCACACTC
ATGAGTTCGGCCATAACATGGGAGCACACCATGACCGTGACCACAGCGCC
TGGAGCGCGGAGTACTCGCACGGAATGCGATATTGCGAGGGCGATGACCC
ATGATTGTCACACTGTTCTGGCAGGTGGCTCTACTCGTATGGCCAAGACC
AGTATGGCTTCTCCACAGTAGGAGCCAACTGCGTTTTCAACTACAGCCAC
ACTCATGAGTTCGGCCATAACATGGGAGCACACCATGACCGTGACCACAG
CGCCTGGAGCGCGGAGTACTCGCACGGAATGCGATATTGCGAGGGCGATG
ACCCATGA
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