mRNA_H-paniculata_contig5664.13200.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5664.13200.1
Unique NamemRNA_H-paniculata_contig5664.13200.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: A0A1Y1I0S7_KLENI (Thioredoxin domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I0S7_KLENI)

HSP 1 Score: 60.8 bits (146), Expect = 1.050e-10
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 PALLVCCSLRWFGLHRE-------VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            P ++V     W  LH+E       VDF ATWCGPCKHIAP + +LA  +P V+FLK
Sbjct:    7 PVIIVTSKAHWDQLHQENAGSTVVVDFWATWCGPCKHIAPVFVELAKQYPHVVFLK 62
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: D7G613_ECTSI (PUB domain, zinc finger protein Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G613_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.340e-10
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   52 VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            VDF A+WCGPCK +AP+YEQLA  HPDVLFLK
Sbjct:   24 VDFTASWCGPCKRVAPQYEQLASQHPDVLFLK 55
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: R4WMN1_RIPPE (Thioredoxin n=1 Tax=Riptortus pedestris TaxID=329032 RepID=R4WMN1_RIPPE)

HSP 1 Score: 59.3 bits (142), Expect = 3.690e-10
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:   52 VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            +DF ATWCGPCK IAP+YE+LA ++PDV+FLK
Sbjct:   25 IDFHATWCGPCKRIAPKYEELATSNPDVVFLK 56
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: A0A7N5K1T6_AILME (Thioredoxin domain-containing protein n=1 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=A0A7N5K1T6_AILME)

HSP 1 Score: 57.4 bits (137), Expect = 1.260e-9
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   52 VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            +DF ATWCGPCK IAP +EQL+  HPD +FLK
Sbjct:   25 IDFTATWCGPCKMIAPFFEQLSLDHPDAVFLK 56
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: A0A2R7WRS6_ONCFA (Thioredoxin domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WRS6_ONCFA)

HSP 1 Score: 58.2 bits (139), Expect = 1.400e-9
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   52 VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            +DF ATWCGPCK IAP+YE+ A  HP+V+FLK
Sbjct:   47 IDFHATWCGPCKKIAPKYEEFAAAHPEVVFLK 78
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: A0A7R9GAF1_9CRUS (Thioredoxin n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GAF1_9CRUS)

HSP 1 Score: 57.8 bits (138), Expect = 1.520e-9
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   52 VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            VDF ATWCGPCKHIAP+ E+L  ++PDV+FLK
Sbjct:   25 VDFFATWCGPCKHIAPKIEELESSNPDVVFLK 56
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: UPI001493F87A (thioredoxin-like n=1 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=UPI001493F87A)

HSP 1 Score: 57.4 bits (137), Expect = 2.110e-9
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   52 VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            +DF ATWCGPCK IAP +EQL+  HPD +FLK
Sbjct:   25 IDFTATWCGPCKMIAPFFEQLSLDHPDAVFLK 56
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: UPI00112AAF08 (thioredoxin n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112AAF08)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-9
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   52 VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            +DF ATWCGPCK+IAP +EQLA  +PDVLF K
Sbjct:   25 IDFTATWCGPCKNIAPIFEQLAKQNPDVLFFK 56
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: A0A2P8ZHV4_BLAGE (Thioredoxin-2 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZHV4_BLAGE)

HSP 1 Score: 55.8 bits (133), Expect = 7.240e-9
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   52 VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            VDF ATWCGPCK IAP+ E LA  HPDV+FLK
Sbjct:   18 VDFFATWCGPCKVIAPKVELLAAEHPDVVFLK 49
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BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Match: A0A0A9WXZ7_LYGHE (Thioredoxin n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WXZ7_LYGHE)

HSP 1 Score: 55.5 bits (132), Expect = 1.200e-8
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   52 VDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK 147
            +DF ATWCGPCK IAP+ E+LA  HP+++FLK
Sbjct:   25 IDFYATWCGPCKMIAPKLEELAQAHPEIVFLK 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5664.13200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1I0S7_KLENI1.050e-1050.00Thioredoxin domain-containing protein n=1 Tax=Kleb... [more]
D7G613_ECTSI2.340e-1078.13PUB domain, zinc finger protein Thioredoxin n=1 Ta... [more]
R4WMN1_RIPPE3.690e-1071.88Thioredoxin n=1 Tax=Riptortus pedestris TaxID=3290... [more]
A0A7N5K1T6_AILME1.260e-968.75Thioredoxin domain-containing protein n=1 Tax=Ailu... [more]
A0A2R7WRS6_ONCFA1.400e-968.75Thioredoxin domain-containing protein n=1 Tax=Onco... [more]
A0A7R9GAF1_9CRUS1.520e-971.88Thioredoxin n=1 Tax=Notodromas monacha TaxID=39904... [more]
UPI001493F87A2.110e-968.75thioredoxin-like n=1 Tax=Ailuropoda melanoleuca Ta... [more]
UPI00112AAF083.050e-971.88thioredoxin n=1 Tax=Rhinatrema bivittatum TaxID=19... [more]
A0A2P8ZHV4_BLAGE7.240e-975.00Thioredoxin-2 n=1 Tax=Blattella germanica TaxID=69... [more]
A0A0A9WXZ7_LYGHE1.200e-865.63Thioredoxin n=3 Tax=Lygus hesperus TaxID=30085 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5664contigH-paniculata_contig5664:8048..8194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog2880.D7G613
Preferred nameUBXN1
KEGG koko:K01456,ko:K03671
KEGG Pathwayko04141,ko04621,ko05418,map04141,map04621,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006457,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010466,GO:0010498,GO:0010605,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0030425,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031593,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0034098,GO:0036435,GO:0036477,GO:0042175,GO:0042176,GO:0042177,GO:0042995,GO:0043005,GO:0043025,GO:0043086,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045861,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051117,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051603,GO:0052547,GO:0060255,GO:0061136,GO:0065007,GO:0065009,GO:0071704,GO:0071796,GO:0080090,GO:0080134,GO:0080135,GO:0090085,GO:0090086,GO:0097447,GO:0097458,GO:0098796,GO:0098827,GO:0120025,GO:0120038,GO:0140030,GO:1901564,GO:1901565,GO:1901575,GO:1901799,GO:1903050,GO:1903051,GO:1903093,GO:1903094,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903573,GO:1904292,GO:1904293,GO:1905897,GO:2000058,GO:2000059,GO:2000152,GO:2000157
EggNOG free text desc.K6-linked polyubiquitin modification-dependent protein binding
EggNOG OGsKOG0908@1,KOG0908@2759,KOG2689@1,KOG2689@2759
EC3.5.1.52
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930605.582813-CDS-H-paniculata_contig5664:8047..81941622930605.582813-CDS-H-paniculata_contig5664:8047..8194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5664 8048..8194 -
1691481369.0093591-CDS-H-paniculata_contig5664:8047..81941691481369.0093591-CDS-H-paniculata_contig5664:8047..8194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5664 8048..8194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5664.13200.1prot_H-paniculata_contig5664.13200.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5664 8048..8194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5664.13200.1

>prot_H-paniculata_contig5664.13200.1 ID=prot_H-paniculata_contig5664.13200.1|Name=mRNA_H-paniculata_contig5664.13200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
PALLVCCSLRWFGLHREVDFAATWCGPCKHIAPEYEQLAFTHPDVLFLK
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mRNA from alignment at H-paniculata_contig5664:8048..8194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5664.13200.1 ID=mRNA_H-paniculata_contig5664.13200.1|Name=mRNA_H-paniculata_contig5664.13200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig5664:8048..8194- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGCCTTACTTGTTTGTTGTTCGCTTCGTTGGTTTGGTTTGCATCGAGA
GGTGGACTTCGCCGCAACATGGTGTGGGCCGTGTAAGCACATCGCGCCCG
AGTATGAGCAGCTGGCCTTTACGCATCCTGACGTGCTCTTCCTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5664:8048..8194-

>mRNA_H-paniculata_contig5664.13200.1 ID=mRNA_H-paniculata_contig5664.13200.1|Name=mRNA_H-paniculata_contig5664.13200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig5664:8048..8194- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGCCTTACTTGTTTGTTGTTCGCTTCGTTGGTTTGGTTTGCATCGAGA
GGTGGACTTCGCCGCAACATGGTGTGGGCCGTGTAAGCACATCGCGCCCG
AGTATGAGCAGCTGGCCTTTACGCATCCTGACGTGCTCTTCCTCAAGCCT
GCCTTACTTGTTTGTTGTTCGCTTCGTTGGTTTGGTTTGCATCGAGAGGT
GGACTTCGCCGCAACATGGTGTGGGCCGTGTAAGCACATCGCGCCCGAGT
ATGAGCAGCTGGCCTTTACGCATCCTGACGTGCTCTTCCTCAAG
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