mRNA_H-paniculata_contig5663.13199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5663.13199.1
Unique NamemRNA_H-paniculata_contig5663.13199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5663.13199.1 vs. uniprot
Match: A0A2W5T1I0_9DELT (Uncharacterized protein n=1 Tax=Archangium gephyra TaxID=48 RepID=A0A2W5T1I0_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 1.310e-6
Identity = 26/53 (49.06%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    7 SFAAAVLGGSGQVGGCVIRSLLSEPRCSSVLLLNRRHLQQYDGEARVKQVVVN 165
            SF A V+GG+GQVGG +IR+L++EP C  V+++NR+ ++Q   +A+V+QVV++
Sbjct:    2 SFRAIVIGGTGQVGGALIRALVAEPTCVEVVMVNRKAMKQ-SVDAKVRQVVMD 53
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BLAST of mRNA_H-paniculata_contig5663.13199.1 vs. uniprot
Match: UPI001AED5846 (hypothetical protein n=1 Tax=Bradyrhizobium elkanii TaxID=29448 RepID=UPI001AED5846)

HSP 1 Score: 49.7 bits (117), Expect = 2.750e-6
Identity = 23/53 (43.40%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    7 SFAAAVLGGSGQVGGCVIRSLLSEPRCSSVLLLNRRHLQQYDGEARVKQVVVN 165
            +F   ++GG+GQVGG V+R+L +EP C+ V+++NRR +     + RV+QVV++
Sbjct:    2 AFRVLIIGGTGQVGGAVVRALAAEPSCAEVVMINRRAISP-GADPRVRQVVLD 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5663.13199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2W5T1I0_9DELT1.310e-649.06Uncharacterized protein n=1 Tax=Archangium gephyra... [more]
UPI001AED58462.750e-643.40hypothetical protein n=1 Tax=Bradyrhizobium elkani... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5663contigH-paniculata_contig5663:4838..5026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930605.4853957-CDS-H-paniculata_contig5663:4837..50261622930605.4853957-CDS-H-paniculata_contig5663:4837..5026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5663 4838..5026 -
1691481368.9966912-CDS-H-paniculata_contig5663:4837..50261691481368.9966912-CDS-H-paniculata_contig5663:4837..5026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5663 4838..5026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5663.13199.1prot_H-paniculata_contig5663.13199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5663 4838..5026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5663.13199.1

>prot_H-paniculata_contig5663.13199.1 ID=prot_H-paniculata_contig5663.13199.1|Name=mRNA_H-paniculata_contig5663.13199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MTSFAAAVLGGSGQVGGCVIRSLLSEPRCSSVLLLNRRHLQQYDGEARVK
QVVVNMDNLESEA
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mRNA from alignment at H-paniculata_contig5663:4838..5026-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5663.13199.1 ID=mRNA_H-paniculata_contig5663.13199.1|Name=mRNA_H-paniculata_contig5663.13199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig5663:4838..5026- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAAGCTTTGCTGCCGCCGTGCTAGGGGGCTCCGGTCAGGTGGGCGG
CTGTGTAATCAGGTCACTTCTGAGCGAGCCTCGCTGTTCTAGTGTGCTGT
TGCTAAACCGAAGGCATTTGCAACAATATGATGGGGAAGCGCGGGTCAAG
CAGGTTGTAGTAAACATGGACAACCTGGAGTCTGAAGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5663:4838..5026-

>mRNA_H-paniculata_contig5663.13199.1 ID=mRNA_H-paniculata_contig5663.13199.1|Name=mRNA_H-paniculata_contig5663.13199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig5663:4838..5026- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAAGCTTTGCTGCCGCCGTGCTAGGGGGCTCCGGTCAGGTGGGCGG
CTGTGTAATCAGGTCACTTCTGAGCGAGCCTCGCTGTTCTAGTGTGCTGT
TGCTAAACCGAAGGCATTTGCAACAATATGATGGGGAAGCGCGGGTCAAG
CAGGTTGTAGTAAACATGGACAACCTGGAGTCTGAAGCCATGACAAGCTT
TGCTGCCGCCGTGCTAGGGGGCTCCGGTCAGGTGGGCGGCTGTGTAATCA
GGTCACTTCTGAGCGAGCCTCGCTGTTCTAGTGTGCTGTTGCTAAACCGA
AGGCATTTGCAACAATATGATGGGGAAGCGCGGGTCAAGCAGGTTGTAGT
AAACATGGACAACCTGGAGTCTGAAGCC
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