mRNA_H-paniculata_contig5663.13198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5663.13198.1
Unique NamemRNA_H-paniculata_contig5663.13198.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.570e-36
Identity = 67/132 (50.76%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  129 DGMWMEHKGVYLLVDNGYHERAMLMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVF-ACCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETDHGCVGSGATL 521
            +G     +G +L++DN YHE   L+ PSK   ++++T +S+ LESV+KDVECFF +LKGRFRIL+L + Y ++E +DN+F  CCILHNMLH  DGLDV +E+ DW G  G HD    +P TD+  VGS   L
Sbjct:   74 NGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVL 205          
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.740e-36
Identity = 66/109 (60.55%), Postives = 80/109 (73.39%), Query Frame = 3
Query:  198 LMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVFA-CCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETDHGCVGSGATL 521
            L+ PSK   N E+T +S+TLESV+KDVECFFD+LKGRFRIL+L + YR KE +DN+F+ CCILHNMLH  DG+DV EED DW G  G HDP   +P TD   +GS   L
Sbjct:   15 LIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKL 123          
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.820e-36
Identity = 67/134 (50.00%), Postives = 89/134 (66.42%), Query Frame = 3
Query:  111 IQTLHEDGMWMEHKGVYLLVDNGYHERAMLMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVF-ACCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETDHGCVGS 509
                ++DG     KG Y+LVDNGYH+  +L+ PSK  L++ +  +SK LESV+KDVECFF +LKGR RIL L + ++ +E++DNVF  CCILHNMLH  DG+D L E+ +W    G     V EPE D G VG+
Sbjct:  111 FDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTSVTEPEADSGSVGT 244          
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.170e-35
Identity = 70/140 (50.00%), Postives = 95/140 (67.86%), Query Frame = 3
Query:  117 TLHE-DGMWMEHKGVYLLVDNGYHERAMLMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVF-ACCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETDHGCVGSGATLAAT 530
            T++E DG   + KG YLLVDNGYH+   L+PPSK  ++  +  +SK LESV+KDVECFF ++KG FRIL+L I Y ++E +DNVF  CCILHNMLH++D    +EE+ +WAG  G H+     P  D   VG+  + A+T
Sbjct:   69 TVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSAST 208          
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.560e-35
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = 3
Query:  111 IQTLHEDGMWMEHKGVYLLVDNGYHERAMLMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVF-ACCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETDHGCVGS 509
                +EDG     KG Y L DNGYH+  +L+ PSK  L++++  +SK LESV+KDVECFF +LKGRFRIL+L + Y+ +E++DNVF  CCILHNMLH  DG+D L E+ +W    G       EPE D G  G+
Sbjct:  156 FDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVENTNWVSSAGVGTTLATEPEADCGSFGT 289          
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 8.600e-35
Identity = 65/109 (59.63%), Postives = 79/109 (72.48%), Query Frame = 3
Query:  198 LMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVFA-CCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETDHGCVGSGATL 521
            L+ PSK   N E+T +S+TLESV+KDVECFF +LKGRFRIL+L + YR KE +DN+F+ CCILHNMLH  DG+DV EED DW G  G HDP   +P TD   +GS   L
Sbjct:    5 LIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKL 113          
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.150e-34
Identity = 71/140 (50.71%), Postives = 96/140 (68.57%), Query Frame = 3
Query:  117 TLHE-DGMWMEHKGVYLLVDNGYHERAMLMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVF-ACCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETDHGCVGSGATLAAT 530
            T++E DG   + KG YLLVDNGYH+   L+PPSK  ++  +  +SK LESV+KDVECFF ++KGRFRIL+L I Y ++E +DNVF  CCILHNMLH++D    +EE+ +WAG  G H+     P  D   VG+  + A+T
Sbjct:  310 TVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSAST 449          
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.850e-34
Identity = 64/125 (51.20%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  120 LHEDGMWMEHKGVYLLVDNGYHERAMLMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVF-ACCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETD 491
            L EDG   E +G+YL+VD GYH+  +  P     +  +E  + K LESV+KD+ECFF +LKGRFRIL++P+LYR   K+D +F  CC LHNMLH++DGL +LE+D +WAG +G  DP V  PE +
Sbjct:  284 LGEDGSEFEERGLYLIVDGGYHKCPVQFP-----VTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLLYRGIHKLDCIFQTCCALHNMLHSYDGLSLLEKDCEWAGADGDLDPWVTTPEAE 403          
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.360e-34
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 3
Query:  111 IQTLHEDGMWMEHKGVYLLVDNGYHERAMLMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVF-ACCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETDHGCVGS 509
                +EDG     KG YLLVDNGYH+  +L+ PSK  L++ +  +SK LESV+KDVECFF +LKGRFRIL+L + Y+ +E++DNVF  C ILHNMLH  DG+D L E+ +W    G       EPE D G VG+
Sbjct:  266 FDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGATLTTEPEADCGSVGT 399          
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 7.630e-34
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 3
Query:  126 EDGMWMEHKGVYLLVDNGYHERAMLMPPSKRFLNDEETWWSKTLESVQKDVECFFDVLKGRFRILQLPILYREKEKMDNVF-ACCILHNMLHAHDGLDVLEEDADWAGVNGQHDPEVAEPETDHGCVGS 509
            +DG   E KG YLLVDNGYH+   L+PPSK  ++  +  +SK LES +KDVEC+F +LKGRFRI +L I + ++E +DNVF  CCILHNMLH+ D    + E+ +WAG  G H+    +P TD+  VGS
Sbjct:  239 QDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVGS 367          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5663.13198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQM6_9PHAE1.570e-3650.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L135_9PHAE1.740e-3660.55Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI1.820e-3650.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTC6_9PHAE1.170e-3550.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUX7_9PHAE4.560e-3550.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMK5_9PHAE8.600e-3559.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.150e-3450.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.850e-3451.20DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KNX4_9PHAE2.360e-3451.49DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY50_9PHAE7.630e-3451.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5663contigH-paniculata_contig5663:1396..2324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue5e-29
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size535
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5663.13198.1prot_H-paniculata_contig5663.13198.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5663 1396..2190 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930605.391238-CDS-H-paniculata_contig5663:1395..17401622930605.391238-CDS-H-paniculata_contig5663:1395..1740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5663 1396..1740 -
1691481368.9604146-CDS-H-paniculata_contig5663:1395..17401691481368.9604146-CDS-H-paniculata_contig5663:1395..1740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5663 1396..1740 -
1622930605.4122572-CDS-H-paniculata_contig5663:2136..21901622930605.4122572-CDS-H-paniculata_contig5663:2136..2190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5663 2137..2190 -
1691481368.9718819-CDS-H-paniculata_contig5663:2136..21901691481368.9718819-CDS-H-paniculata_contig5663:2136..2190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5663 2137..2190 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930605.432162-UTR-H-paniculata_contig5663:2190..23241622930605.432162-UTR-H-paniculata_contig5663:2190..2324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5663 2191..2324 -
1691481368.9823346-UTR-H-paniculata_contig5663:2190..23241691481368.9823346-UTR-H-paniculata_contig5663:2190..2324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5663 2191..2324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5663.13198.1

>prot_H-paniculata_contig5663.13198.1 ID=prot_H-paniculata_contig5663.13198.1|Name=mRNA_H-paniculata_contig5663.13198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MWMEHKGVYLLVDNGYHERAMLMPPSKRFLNDEETWWSKTLESVQKDVEC
FFDVLKGRFRILQLPILYREKEKMDNVFACCILHNMLHAHDGLDVLEEDA
DWAGVNGQHDPEVAEPETDHGCVGSGATLAATT
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mRNA from alignment at H-paniculata_contig5663:1396..2324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5663.13198.1 ID=mRNA_H-paniculata_contig5663.13198.1|Name=mRNA_H-paniculata_contig5663.13198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=929bp|location=Sequence derived from alignment at H-paniculata_contig5663:1396..2324- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCTTGCCGTCACGAAGGGCTTTCCTGGCGCTACCAACGACAAGTCAAT CATCCGTTACGACGTGATGGTGCAAACGGTCGGTGAGGATCCCGCGTACT GTGACCGGACATTCAGACTCTTCATGAGGACGGTATGTGGATGGAACACA AGGGAGTCTACCTGCTGGTGGACAACGGGTACCATGAGGTGAGAACGTCA CGGGTATGGTTCTAATAGGCGAAGATTTCCTATTACCCAGGACTACAGTT AAGTTCAATGCAGCCGAAACGTGAAGGGTCAGGGTTAGGGTTAAGTGCCT GTTGTACCACCGTCACATCTAAAATGCGAGTTAACAATGTTCACAGCATT TAAAAGTAGCGAGACTTATGCTAACCGCAACCAAACACACCTTTCAAAAT TGAGGAATTCGATTACAAGTGATCTCTACACCAATTTTCATTTAGTATGC CTGCATTGGCGCCTGGTGCGCCCGTTTCAGTTGGTGATAACAACCCCGTG TGCGAAACCAACATACACACATCCTCGCTCAGTGGAAACCAAACATCCTC TCGTCGACCCCATCGCGTCTTCATACACACGCAGAGGGCTATGCTCATGC CCCCTTCAAAGCGCTTCTTGAACGACGAGGAGACATGGTGGAGCAAGACG TTGGAGAGCGTACAAAAGGATGTGGAATGTTTCTTCGACGTCCTGAAAGG CAGGTTCAGAATCCTCCAGCTTCCCATCCTCTACCGCGAAAAAGAAAAAA TGGACAATGTCTTCGCGTGCTGCATTCTCCACAACATGCTCCACGCTCAC GACGGCTTGGATGTACTAGAGGAGGACGCGGACTGGGCCGGGGTGAACGG TCAGCATGACCCTGAGGTTGCTGAGCCTGAGACGGACCACGGATGTGTAG GGTCAGGCGCGACTTTGGCGGCGACGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig5663:1396..2324-

>mRNA_H-paniculata_contig5663.13198.1 ID=mRNA_H-paniculata_contig5663.13198.1|Name=mRNA_H-paniculata_contig5663.13198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig5663:1396..2324- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGATGGAACACAAGGGAGTCTACCTGCTGGTGGACAACGGGTACCA
TGAGATGTGGATGGAACACAAGGGAGTCTACCTGCTGGTGGACAACGGGT
ACCATGAGAGGGCTATGCTCATGCCCCCTTCAAAGCGCTTCTTGAACGAC
GAGGAGACATGGTGGAGCAAGACGTTGGAGAGCGTACAAAAGGATGTGGA
ATGTTTCTTCGACGTCCTGAAAGGCAGGTTCAGAATCCTCCAGCTTCCCA
TCCTCTACCGCGAAAAAGAAAAAATGGACAATGTCTTCGCGTGCTGCATT
CTCCACAACATGCTCCACGCTCACGACGGCTTGGATGTACTAGAGGAGGA
CGCGGACTGGGCCGGGGTGAACGGTCAGCATGACCCTGAGGTTGCTGAGC
CTGAGACGGACCACGGATGTGTAGGGTCAGGCGCGACTTTGGCGGCGACG
ACGAGGGCTATGCTCATGCCCCCTTCAAAGCGCTTCTTGAACGACGAGGA
GACATGGTGGAGCAAGACGTTGGAGAGCGTACAAAAGGATGTGGAATGTT
TCTTCGACGTCCTGAAAGGCAGGTTCAGAATCCTCCAGCTTCCCATCCTC
TACCGCGAAAAAGAAAAAATGGACAATGTCTTCGCGTGCTGCATTCTCCA
CAACATGCTCCACGCTCACGACGGCTTGGATGTACTAGAGGAGGACGCGG
ACTGGGCCGGGGTGAACGGTCAGCATGACCCTGAGGTTGCTGAGCCTGAG
ACGGACCACGGATGTGTAGGGTCAGGCGCGACTTTGGCGGCGACGACG
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