mRNA_H-paniculata_contig12080.1319.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12080.1319.1
Unique NamemRNA_H-paniculata_contig12080.1319.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12080.1319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12080contigH-paniculata_contig12080:6577..7034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12080.1319.1prot_H-paniculata_contig12080.1319.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12080 6577..6911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.5536785-CDS-H-paniculata_contig12080:6576..67301622928924.5536785-CDS-H-paniculata_contig12080:6576..6730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12080 6577..6730 +
1691480669.05381-CDS-H-paniculata_contig12080:6576..67301691480669.05381-CDS-H-paniculata_contig12080:6576..6730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12080 6577..6730 +
1622928924.5658605-CDS-H-paniculata_contig12080:6843..69111622928924.5658605-CDS-H-paniculata_contig12080:6843..6911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12080 6844..6911 +
1691480669.0725288-CDS-H-paniculata_contig12080:6843..69111691480669.0725288-CDS-H-paniculata_contig12080:6843..6911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12080 6844..6911 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.581446-UTR-H-paniculata_contig12080:6911..70341622928924.581446-UTR-H-paniculata_contig12080:6911..7034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12080 6912..7034 +
1691480669.080093-UTR-H-paniculata_contig12080:6911..70341691480669.080093-UTR-H-paniculata_contig12080:6911..7034Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12080 6912..7034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12080.1319.1

>prot_H-paniculata_contig12080.1319.1 ID=prot_H-paniculata_contig12080.1319.1|Name=mRNA_H-paniculata_contig12080.1319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
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mRNA from alignment at H-paniculata_contig12080:6577..7034+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12080.1319.1 ID=mRNA_H-paniculata_contig12080.1319.1|Name=mRNA_H-paniculata_contig12080.1319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig12080:6577..7034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig12080:6577..7034+

>mRNA_H-paniculata_contig12080.1319.1 ID=mRNA_H-paniculata_contig12080.1319.1|Name=mRNA_H-paniculata_contig12080.1319.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig12080:6577..7034+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
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