prot_H-paniculata_contig5650.13180.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig5650.13180.1
Unique Name	prot_H-paniculata_contig5650.13180.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	182

Homology

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BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 4.320e-116
Identity = 163/181 (90.06%), Postives = 173/181 (95.58%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FESEIGAQPPLGFWDPLGLL DADQERF+RLRYVE+KHGRIAMLAIAGHLTQQNTRLPGMLS S N+SFADMPNG+AALSKIPP GLAQIF FIGFLEL VMKNVEGSFPGDFTLGGNPFGSSW+AMS ETQASKRAIELNNGRAAQMGILALMVHE+L+N+PYVINDLLGA Y+FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

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BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 332 bits (851), Expect = 3.590e-114
Identity = 161/181 (88.95%), Postives = 174/181 (96.13%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FESEIGAQ PLGFWDPLGLL+DADQERF+RLRYVE+KHGRIAMLAIAGHLTQQNTRLPGMLS S N+SFADMPNG+AALSKIPP GLAQIF FIGFLEL VMKNVEGSFPGDFTLGGNPFG+SW+AMS ETQASKRAIELNNGRAAQMGILALMVHE+L+N+PYVINDL+GASY+FN
Sbjct:   37 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 335 bits (860), Expect = 3.500e-113
Identity = 163/181 (90.06%), Postives = 173/181 (95.58%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FESEIGAQPPLGFWDPLGLL DADQERF+RLRYVE+KHGRIAMLAIAGHLTQQNTRLPGMLS S N+SFADMPNG+AALSKIPP GLAQIF FIGFLEL VMKNVEGSFPGDFTLGGNPFGSSW+AMS ETQASKRAIELNNGRAAQMGILALMVHE+L+N+PYVINDLLGA Y+FN
Sbjct:  197 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

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BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 1.760e-112
Identity = 158/181 (87.29%), Postives = 171/181 (94.48%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FESEIGAQPPLGFWDPLGLL+DADQERF+RLRYVE+KHGRIAMLAIAGHLTQQN RLPGMLS S N+SFADMPNG+AALSKIPP GLAQIF F+GFLEL VMKNVEGSFPGDFT GGNPF SSW+AMS ETQ SKRAIELNNGRAAQMGILALMVHE+L+N+PY+INDLLGASY+FN
Sbjct:   38 MKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 5.610e-112
Identity = 158/181 (87.29%), Postives = 171/181 (94.48%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FESEIGAQPPLGFWDPLGLL+DADQERF+RLRYVE+KHGRIAMLAIAGHLTQQN RLPGMLS S ++SFADMPNG+AALSKIPP GLAQIF F+GFLEL VMKNVEGSFPGDFT GGNPF SSW+AMS ETQASKRAIELNNGRAAQMGILALMVHE+L+N+PYVINDLLGA Y+FN
Sbjct:   41 MKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 323 bits (829), Expect = 2.380e-111
Identity = 159/181 (87.85%), Postives = 170/181 (93.92%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FE EIGAQ PLGFWDPLGLL+DADQERF+RLRYVE+KHGRIAMLAIAGHLTQQN RLPGMLS S N+SFADMPNG+AALSKIPP GLAQIF FIGFLEL VMKNVEGSFPGDFTLGGNPF SSW+AMS ETQ SKRAIELNNGRAAQMGILALMVHE+L+N+PYVINDLLGASY+FN
Sbjct:    2 MKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 324 bits (831), Expect = 3.250e-111
Identity = 157/181 (86.74%), Postives = 171/181 (94.48%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FESEIGAQ PLGFWDPLGLL+DADQERF+RLRYVE+KHGRIAMLAIAGHLTQQNTRLPGMLS S N+SFADMPNG+AALSKIPP GLAQIF FIGFLEL VMKNVEGSFPGDF +GGNPF SSW++MS+ETQASKRAIELNNGRAAQMGIL +MVHE+LSNQPY+ NDLLGASY+FN
Sbjct:   31 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

[Close]

BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 322 bits (824), Expect = 4.500e-110
Identity = 159/181 (87.85%), Postives = 170/181 (93.92%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FESEIGAQ PLGFWDPLGLL DADQ+ F+RLRYVE+K GRIAMLAIAGHLTQQN RLPGMLS S N+SFADMPNG+AALSKIPP GLAQIF FIGFLEL VMKNVEGSFPGDFTLGGNPF SSW+AMSAETQASKRAIELNNGRAAQMGILALMVHE+L+N+PYVINDLLGASY+FN
Sbjct:   36 MKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

[Close]

BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 296 bits (758), Expect = 4.430e-100
Identity = 144/181 (79.56%), Postives = 160/181 (88.40%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FESEIGAQPP+GFWDPLGL++DADQERFDRLRYVEIKHGRIAMLA+ GH+TQQNTRLPGMLS  EN++FAD PNG+AA SKIPPLG  QI L IG  EL V+K VEGSFPGD T GGN F S+W+ MS ETQASKRAIELNNGRAAQMGILA+MVHE+LSNQPY+INDL GA+Y FN
Sbjct:   32 MKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

[Close]

BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 282 bits (722), Expect = 1.090e-94
Identity = 140/206 (67.96%), Postives = 160/206 (77.67%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFWDPLGLLSDA-------------------------DQERFDRLRYVEIKHGRIAMLAIAGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGFLELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAAQMGILALMVHEKLSNQPYVINDLLGASYSFN 181
            MKM+FESE+GAQPPLGF+DPLGLL D                          DQERFDRLRYVE+KHGRI+MLA+AGHL  QN R PG LS    ++FADMPNG+AA+SKIPPLGLAQI  FIGFLEL VMKNVEGSFPGD T+GGNPF + W+AMS ET+ SKRAIELNNGRAAQMGILA+M+HE++SNQPY+INDLL A Y+FN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5650.13180.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JDS8_9PHAE	4.320e-116	90.06	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPB_MACPY	3.590e-114	88.95	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
D8LNK6_ECTSI	3.500e-113	90.06	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5KCX6_9PHAE	1.760e-112	87.29	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
A0A6H5JHT6_9PHAE	5.610e-112	87.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPD_MACPY	2.380e-111	87.85	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPF_MACPY	3.250e-111	86.74	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
FCPC_MACPY	4.500e-110	87.85	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
FCPE_MACPY	4.430e-100	79.56	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
A0A6H5KBS3_9PHAE	1.090e-94	67.96	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 9..161 e-value: 1.3E-32 score: 113.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 7..177 e-value: 1.9E-25 score: 91.8
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..165
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 2..165
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 2..172

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5650	contig	H-paniculata_contig5650:8521..9435 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5650.13180.1	mRNA_H-paniculata_contig5650.13180.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig5650 8454..10318 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig5650.13180.1 ID=prot_H-paniculata_contig5650.13180.1|Name=mRNA_H-paniculata_contig5650.13180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
MKMAFESEIGAQPPLGFWDPLGLLSDADQERFDRLRYVEIKHGRIAMLAI
AGHLTQQNTRLPGMLSTSENISFADMPNGLAALSKIPPLGLAQIFLFIGF
LELGVMKNVEGSFPGDFTLGGNPFGSSWEAMSAETQASKRAIELNNGRAA
QMGILALMVHEKLSNQPYVINDLLGASYSFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln