mRNA_H-paniculata_contig565.13178.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig565.13178.1 vs. uniprot
Match: A0A6H5KLQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ0_9PHAE) HSP 1 Score: 159 bits (401), Expect = 9.450e-36 Identity = 91/129 (70.54%), Postives = 104/129 (80.62%), Query Frame = 1
Query: 2152 LACVRGLLQDLERDLDIARVLLPECNRFRKVVGCVGEAVGRGMAASSREAMDLREALEEATEFTRTLSSPESFVLVLAELLSDGFEDPSAMLGFSTRRLQRAVAALPEPSELSTAATAAAARAQLRSLA 2538
LA VR LL +LE DLD ARVLLPECNRFRKVV CV E+VG GM A R+AM L EAL EATEF+RTLSSPE+F++V+AELL DGFEDP AMLG+ TRRL AV+A+PEPS A+ A AAR+QLRSLA
Sbjct: 402 LATVRELLVELEEDLDAARVLLPECNRFRKVVRCVAESVGPGMDARPRQAMGLIEALREATEFSRTLSSPEAFLVVMAELLLDGFEDPPAMLGYCTRRLCCAVSAVPEPSSF--ASRAVAARSQLRSLA 528
BLAST of mRNA_H-paniculata_contig565.13178.1 vs. uniprot
Match: D7FXI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI9_ECTSI) HSP 1 Score: 142 bits (359), Expect = 9.390e-31 Identity = 86/132 (65.15%), Postives = 99/132 (75.00%), Query Frame = 1
Query: 2152 LACVRGLLQDLERDLDIARVLLPECNRFRKVVGCVGEAVGRGMAASSREAMDLREALEEATEFTRTLSSPESFVLVLAELLSDGFEDPSAMLGFSTRRLQRAVAALPEPSELSTAATAAAARAQLRSLATAG 2547
LA VRGLL +LE DLD ARVLLPECNRFRKVV CV E+ AM L EAL EATEF+RTLSSPE+F++++AELL DGFEDP AMLG+ TRRL V+ALPEPS S+A+ A AAR+QL SLA G
Sbjct: 377 LATVRGLLVELEEDLDAARVLLPECNRFRKVVRCVAES-----------AMGLIEALREATEFSRTLSSPEAFLVIMAELLMDGFEDPPAMLGYCTRRLCCVVSALPEPSS-SSASRAVAARSQLCSLAKGG 496 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig565.13178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig565.13178.1 >prot_H-paniculata_contig565.13178.1 ID=prot_H-paniculata_contig565.13178.1|Name=mRNA_H-paniculata_contig565.13178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=780bp MVGLAAEKRTAGIGGGDFPLDPFVSSAGAGGRATVSSQRDTTASPKARMSback to top mRNA from alignment at H-paniculata_contig565:11912..25033+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig565.13178.1 ID=mRNA_H-paniculata_contig565.13178.1|Name=mRNA_H-paniculata_contig565.13178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13122bp|location=Sequence derived from alignment at H-paniculata_contig565:11912..25033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig565:11912..25033+ >mRNA_H-paniculata_contig565.13178.1 ID=mRNA_H-paniculata_contig565.13178.1|Name=mRNA_H-paniculata_contig565.13178.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4680bp|location=Sequence derived from alignment at H-paniculata_contig565:11912..25033+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |