mRNA_H-paniculata_contig5644.13176.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: D8LKT7_ECTSI (LNS2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT7_ECTSI) HSP 1 Score: 295 bits (756), Expect = 2.230e-87 Identity = 147/222 (66.22%), Postives = 179/222 (80.63%), Query Frame = 2
Query: 137 LVDGTANISSALLQNRYFPDSRVLVAECYAFLWEIHTPVIVMDIDGTITRSDVPGLIMTLTPGFL-DCTHSGICDLLTRIASE-GAVVMYLTSRPIVLAAKTRAFLLSTKQGDTTLPVGPLQCCLEKLTGVIWRELVAKNMHEYKMNALLDLSRVFRNAGRAFGEPVFAAGIGNKLTDAVAYRGAGIPPDFIFLIDTESHLQVWDGDSSKLGGGTPGVALSP 796
LVDG ++ + RY D RVLVAEC+AF+W+++TP+IV+DIDGTITRSDV GL+MTL+PG + + TH GIC LL R+ E GA V+YLTSRPI LAAKTR FL ST+Q LP+GPLQCCLEK++GV+WRELV+KNMH+YK+ ALLDL+R FR AGR FGE VFAAGIGN++ DAVAYR AGIP DFIFLIDTES+L+VWDGD+SK+GG +SP
Sbjct: 8 LVDG---FNTVRFEIRYLRDPRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTNHTHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKRLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRVWDGDTSKMGGSRANSPISP 226
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: A0A6H5L2R2_9PHAE (LNS2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R2_9PHAE) HSP 1 Score: 295 bits (754), Expect = 3.230e-85 Identity = 148/231 (64.07%), Postives = 182/231 (78.79%), Query Frame = 2
Query: 110 LSLFSIYPVLVDGTANISSALLQNRYFPDSRVLVAECYAFLWEIHTPVIVMDIDGTITRSDVPGLIMTLTPGFL-DCTHSGICDLLTRIASE-GAVVMYLTSRPIVLAAKTRAFLLSTKQGDTTLPVGPLQCCLEKLTGVIWRELVAKNMHEYKMNALLDLSRVFRNAGRAFGEPVFAAGIGNKLTDAVAYRGAGIPPDFIFLIDTESHLQVWDGDSSKLGGGTPGVALSP 796
L++ + LVDG ++ + RY D RVLVAEC+AF+W+++TP+IV+DIDGTITRSDV GL+MTL+PG + + H GIC LL R+ E GA V+YLTSRPI LAAKTR FL ST+Q LP+GPLQCCLEK++GV+WRELV+KNMH+YK+ ALLDL+R FR AGR FGE VFAAGIGN++ DAVAYR AGIP DFIFLIDTES+L+VWDGD+SKLGG +SP
Sbjct: 131 LAMLAKDDTLVDG---FNTVRFEIRYLRDPRVLVAECFAFVWDVNTPMIVVDIDGTITRSDVSGLMMTLSPGLVTNHNHEGICSLLARMVDEAGAQVVYLTSRPISLAAKTRTFLASTEQEGKKLPLGPLQCCLEKVSGVLWRELVSKNMHDYKITALLDLARPFREAGRTFGEAVFAAGIGNRVHDAVAYRAAGIPKDFIFLIDTESNLRVWDGDASKLGGSIANSPISP 358
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: A0A836C9R7_9STRA (LNS2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R7_9STRA) HSP 1 Score: 179 bits (455), Expect = 8.050e-43 Identity = 107/285 (37.54%), Postives = 148/285 (51.93%), Query Frame = 2
Query: 182 RYFPDSRVLVAECYAFLWEIHTPVIVMDIDGTITRSDVPGLIMTLTPGFLDCTHSGICDLLTRIASEGAVVMYLTSRPIVLAAKTRAFLLSTKQGDTTLPVGPLQCCLEK------------------------------------------------------------LTGVIWRELVAKNMHEYKMNAL---------------------LDLSRVFRNAGRAFGEPVFAAGIGNKLTDAVAYRGAGIPPDFIFLIDTESHLQVWDGDSS--KLGGGTPGVA 787
R+ D RVLVAEC+AF ++ ++VMDIDGTIT+SDV GLIMT +PG D GIC LL +++EGA ++YLTSRP+VLA +TRAFL+ +Q LP+GPL C K LT V++RE++AK+MHE+K +AL +++ VF AGR +PV+AAGIGN+ TDA AY+ AG+P DFI +ID+ +++Q+W + K+ G PG A
Sbjct: 703 RFRGDPRVLVAECFAFAFDARDRLLVMDIDGTITKSDVQGLIMTFSPGMTDHLQPGICSLLHHMSNEGAHILYLTSRPVVLAKRTRAFLMDLRQDGLLLPLGPLLTCKSKVRSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPSTLTDVVYREVIAKDMHEFKGSALQASLISALSAKNVTSGLQMLHAEVAEVFFRAGRPEDDPVYAAGIGNRETDAFAYQAAGVPEDFICIIDSSANIQIWSPVNGLRKMQWGGPGEA 987
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: A0A7S3Y642_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y642_HETAK) HSP 1 Score: 142 bits (359), Expect = 1.920e-33 Identity = 82/237 (34.60%), Postives = 126/237 (53.16%), Query Frame = 2
Query: 137 LVDGTANISSALLQNRYFPDSRVLVAECYAFLWEIHTPVIVMDIDGTITRSDVPGLIMTLT-PGFLDCTHSGICDLLTRIASEGAVVMYLTSRPIVLAAKTRAFLLSTKQGDTTLPVGPLQCCLEKLTGVIWRELVAKNMHEYKMNALLDLSRVFRNAGRAFGEPVFAAGIGNKLTDAVAYRGAGIPPDFIFLIDTESHLQVWDGDSSKLGGGTPGV--ALSPPHLKQSREAQLSPQ 838
L+DG N+ L N R++ AE F+W++ +++ DIDGTIT++DV G + T T P + H GIC L+ + +G +M++TSRP++L T+ FL + Q +P GPL C + L V+++E+V K +H YK L + R+F +GR E +F G GNK TDA AY + FIF+I +S + VW ++ G P + + P L L P+
Sbjct: 110 LMDGKNNLRFELTFNDQ-KGMRLIHAETSCFVWDVDCRIVLCDIDGTITKTDVGGFVGTSTNPEDTNFVHDGICPFLSDLVEDGINIMFVTSRPMMLKQLTKTFLSTICQDGCFIPEGPLFNCPQNLLNVVFQEVVTKTIHRYKTGVLQAVMRLFELSGRENPEDLFRLGFGNKPTDAKAYEQVCVRSQFIFIIGKDSRIVVWGTKVNEEDGMVPLIFSTYADPDLLAYARTALRPE 345
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: A0A6G0WU92_9STRA (LNS2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU92_9STRA) HSP 1 Score: 144 bits (364), Expect = 3.040e-33 Identity = 84/226 (37.17%), Postives = 122/226 (53.98%), Query Frame = 2
Query: 86 QENNTTRRLSLFSIYPVLVDGTANISSALLQNRYFPDSR--VLVAECYAFLWEIHTPVIVMDIDGTITRSDVPGLIMTLTPGFLDCTHSGICDLLTRIASEGAVVMYLTSRPIVLAAKTRAFLLSTKQGDTTLPVGPLQCCLEKLTGVIWRELVAKNMHEYKMNALLDLSRVFRNAGRAFGEPVFAAGIGNKLTDAVAYRGAGIPPDFIFLIDTESHLQVWDGDSS 757
+ +N S + +P+++DG N ++ + DSR + V EC ++W+ I+ D+DGTIT DV G I TL G D H G C+ T++ S GA ++YLT+RPI A+ +R L +QGD LP GP+ L G ++ E+V KN H +K L + GR PVF AG GN+ TD VAY+ AG+ + IFLI+ S + GD+S
Sbjct: 121 ESSNFVPPASTWERFPLVLDGEPNF----VRFEHVRDSRSYIRVVECNLYVWDPEDFAIIADLDGTITIDDVGGHIRTLRLGQYDYIHEGSCEFFTKLQSLGARILYLTARPINWASMSRVHLKEARQGDYKLPQGPVITNSLGLAGALFVEVVHKNPHIFKAGVLKQVEEAMHEGGRTSKHPVFVAGFGNRPTDVVAYKEAGVDVNCIFLINPTSTM-THSGDNS 341
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: A0A835ZF08_9STRA (LNS2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF08_9STRA) HSP 1 Score: 144 bits (363), Expect = 1.120e-31 Identity = 97/280 (34.64%), Postives = 137/280 (48.93%), Query Frame = 2
Query: 158 ISSALLQNRYFPDSRVLVAECYAFLWEIHTP-VIVMDIDGTITRSDVPGLIMTLT------PGFLDCTHSGICDLLTRIASE---------------------------GAVVMYLTSRPIVLAAKTRAFLLSTKQGDTTLPVGPLQCCLEK-------------------------------------LTGVIWRELVAKNMHEYKMNALLDLSRVFRNAGRAFGEPVFAAGIGNKLTDAVAYRGAG--------------IPPDFIFLIDTESHLQVW 742
+++ + R D RVLVA+C AF + V+V+DIDGTITRSD GL+MTL PG +D G+ LL +A+E GA ++YLT+RP+ +A +TRAFL+ Q LP+GPL L K LT V++REL+A++MH +K L D++ VFR+AGR VFAAG+GN+LTDA+AY+GAG IP +FI +ID ++ ++ W
Sbjct: 623 VNTLRFEARVRGDPRVLVADCLAFAMDAAAARVVVVDIDGTITRSDAHGLLMTLRLLMMLRPGTVDHLQPGVYSLLHHVAAEEKKKRRXXXXXXXXXXXXXXXXXXXXXGAQLLYLTARPLAMAPRTRAFLVGATQDGLVLPLGPLVTNLCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARERGLTDVVYRELIARDMHRFKGQVLQDVAAVFRSAGRHARSRVFAAGVGNRLTDALAYQGAGGTPFRXXXXXXMAGIPDEFICIIDPKTAIRTW 902
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: A0A7S3NRI9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NRI9_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.170e-29 Identity = 79/193 (40.93%), Postives = 110/193 (56.99%), Query Frame = 2
Query: 206 LVAECYAFLWEIHTPVIVMDIDGTITRSDVPGLIMTLTPGFLDCTHSGICDLLTRIASEGAVVMYLTSRPIVLAAKTRAFLLSTKQGDTT-----------LPVGPLQCCLEKLTGVIWRELVAKNMHEYKMNALLDLSRVFRNAGRAFGEPV----FAAGIGNKLTDAVAYRGAGIPPDFIFLIDTESHLQV 739
L+AE FLW+ + +++ DIDGT+TR+D+ G + ++ H+G+CD L ++AS A V+YLTSRP+VLA TR FL + KQ + +P GPL LT ++ ELV KN HE+K AL D+ F + + V F AG GNK TD AY+ AGIP IFLI T+S L++
Sbjct: 74 LIAEARIFLWKQNDGIVICDIDGTVTRTDIRGFVDSVVNETPTNAHAGVCDFLDQVASR-AHVLYLTSRPLVLADATRFFLDNLKQSALSAGRGIGARAARMPQGPLIMARSNLTSALYSELVLKNPHEFKTWALHDILAAFVPTTKDEDQLVMPMPFKAGFGNKHTDCRAYQTAGIPNHAIFLIGTDSVLRL 265
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: F0YKA3_AURAN (LNS2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKA3_AURAN) HSP 1 Score: 134 bits (338), Expect = 5.490e-29 Identity = 87/199 (43.72%), Postives = 106/199 (53.27%), Query Frame = 2
Query: 209 VAECYAFLWEIHTPVIVMDIDGTITRSDVPGLI---MTLTPGFLDCTHSGICDLLTRIASEGAVVMYLTSRPIVLAAKTRAFLLSTKQGDTTLPVGPLQCCLEKLTGVIWRELVAKNMHEYKMNALLDLSRVFRNAGRAFGEPV---FAAGIGNKLTDAVAYRGAGIPPDFIFLIDTESHLQVWDGDSSKLGGGTPGVA 787
VAE AFLW+ V+V D+DGTIT SDV G + M+ P F H G+C L + + A V+YLTSRP+ LAA TRAFL S +QG LP GPL E L G ++ E+VAK +K ALLDL+ F G PV F GN+ TDA AY AG+ D F ID S L G G G+A
Sbjct: 407 VAEARAFLWDAGDRVVVCDVDGTITASDVRGFLDSTMSAAPSF---AHGGVCAFLGGVVAPRARVLYLTSRPVALAASTRAFLASLRQGRDGLPDGPLVTSGEGLLGAVYAEVVAKTPDVFKTRALLDLAAAF--GGDPGASPVVLGFGPRFGNRDTDARAYARAGVADDRNFSIDARSRLTSRCGTLGFAGYDDAGLA 600
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: A0A0W8DM28_PHYNI (LNS2 domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DM28_PHYNI) HSP 1 Score: 130 bits (327), Expect = 7.900e-29 Identity = 69/170 (40.59%), Postives = 98/170 (57.65%), Query Frame = 2
Query: 230 LWEIHTPVIVMDIDGTITRSDVPGLIMTLTPGFLDCTHSGICDLLTRIASEGAVVMYLTSRPIVLAAKTRAFLLSTKQGDTTLPVGPLQCCLEKLTGVIWRELVAKNMHEYKMNALLDLSRVFRNAGRAFGEPVFAAGIGNKLTDAVAYRGAGIPPDFIFLIDTESHLQV 739
LW + V+V+D+DGT+T SDV G I TL G D H+G CD T++ G ++YLT+RP+ A+ +R L + Q +LP G L LTG ++ E+V K H +K+ L +L +AGR PVF AG GN+ TD VAY GI P IF++D S+++
Sbjct: 147 LWGPNESVVVVDLDGTLTISDVEGHIRTLRLGQYDFLHAGACDFFTKLHELGMRIVYLTARPLDWASASRTHLENAVQQSISLPPGVLITNSTGLTGALFTEVVNKTPHLFKIQVLNELQLTLIHAGRVIEHPVFVAGFGNRPTDIVAYEKVGIDPSLIFMLDPYSNIKA 316
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Match: A0A1V9ZNF1_9STRA (Lipin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZNF1_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.090e-28 Identity = 76/202 (37.62%), Postives = 108/202 (53.47%), Query Frame = 2
Query: 140 VDGTANISSALLQNRYFPDSRVL--VAECYAFLWEIHTPVIVMDIDGTITRSDVPGLIMTLTPGFLDCTHSGICDLLTRIASEGAVVMYLTSRPIVLAAKTRAFLLSTKQGDTTLPVGPLQCCLEKLTGVIWRELVAKNMHEYKMNALLDLSRVFRNAGRAFGEPVFAAGIGNKLTDAVAYRGAGIPPDFIFLIDTESHLQV 739
+DGT N ++ ++ DSR V EC ++W+ + +++D+DGTIT SDV G I TL G D H G CD T++ S GA ++YLT+RP+ A +R + +Q + LP+GP+ V KN H +K L + AGR PVF AG GN+ +D +AY AG+P + FLID ES LQ
Sbjct: 107 LDGTPNS----VRFQHVRDSRTYTRVVECDLYVWQPNDFAVIVDLDGTITISDVEGHIRTLRLGQYDYMHMGSCDFFTKLQSIGARILYLTARPLNWAGGSRIHIREARQENIGLPLGPV---------------VHKNPHIFKTGVLKAIQDAMVRAGRTSPHPVFVAGFGNRPSDTLAYTDAGVPLNATFLIDPESKLQA 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5644.13176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5644.13176.1 >prot_H-paniculata_contig5644.13176.1 ID=prot_H-paniculata_contig5644.13176.1|Name=mRNA_H-paniculata_contig5644.13176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=519bp MDIDGTITRSDVPGLIMTLTPGFLDCTHSGICDLLTRIASEGAVVMYLTSback to top mRNA from alignment at H-paniculata_contig5644:3622..12100- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5644.13176.1 ID=mRNA_H-paniculata_contig5644.13176.1|Name=mRNA_H-paniculata_contig5644.13176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8479bp|location=Sequence derived from alignment at H-paniculata_contig5644:3622..12100- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5644:3622..12100- >mRNA_H-paniculata_contig5644.13176.1 ID=mRNA_H-paniculata_contig5644.13176.1|Name=mRNA_H-paniculata_contig5644.13176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3114bp|location=Sequence derived from alignment at H-paniculata_contig5644:3622..12100- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |