mRNA_H-paniculata_contig5642.13172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5642.13172.1
Unique NamemRNA_H-paniculata_contig5642.13172.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5642.13172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5642contigH-paniculata_contig5642:3066..4964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_001200.1
Exons1
Model size1899
Cds size1794
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930602.1595275-UTR-H-paniculata_contig5642:3065..31701622930602.1595275-UTR-H-paniculata_contig5642:3065..3170Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5642 3066..3170 +
1691481367.2294035-UTR-H-paniculata_contig5642:3065..31701691481367.2294035-UTR-H-paniculata_contig5642:3065..3170Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5642 3066..3170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930602.1731927-CDS-H-paniculata_contig5642:3170..49641622930602.1731927-CDS-H-paniculata_contig5642:3170..4964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5642 3171..4964 +
1691481367.2380207-CDS-H-paniculata_contig5642:3170..49641691481367.2380207-CDS-H-paniculata_contig5642:3170..4964Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5642 3171..4964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5642.13172.1prot_H-paniculata_contig5642.13172.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5642 3171..4964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5642.13172.1

>prot_H-paniculata_contig5642.13172.1 ID=prot_H-paniculata_contig5642.13172.1|Name=mRNA_H-paniculata_contig5642.13172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=598bp
MQNSRILPTWPPSAIKAGNRQRRSTSATKASLARVAGRPVAAVHPSRGSR
RGADFVVLGNELSFLSTPIFSGDVSDDHSCIISEEGTLDRSCSSLISTAP
STTPSDHHEDLMNAPSRTENDGRKTGTLSPTAEPTVSVADHRNYSGKCEY
GCMQHEPKKCSNLSAKRRDVVFRDARACCLQGMPSVCTVRTAPNVAMERA
ETLRAHVSRQIERTGPTTVVVRQAGSRLPQGKNASSSNGAAQVNTNSAPL
KSQARSSSAVEQVPRSAAQSPCSSLESEVVRDVFGGGDFVTQRNGMHTAW
RRANLALQTTAADSLQPPPVEEGVVAASPTTADRHVVDENKNPIPVEKEQ
QLRRVCLRRHFIPPSSADKNTPITSNDGARGPPESRLFLRRHRGLSARPT
RENVRSAANVPSSVRGVDSSSYNSSGGAARKPAGGGKKSPPEARTLRFSG
ASSEHLADAAIVPRRRVGEGRRVSAPAVLEGRVVGRFEAGSGQASSQHRS
RSRLGKNGSPDQPVDRGTLENRAATVAPLSSAAARKNIATVARKSKVGTR
ADPVTLYRERQDAEVRRTSAAARKRTSRREGCDRRHMDGAPTAVGYFG
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mRNA from alignment at H-paniculata_contig5642:3066..4964+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5642.13172.1 ID=mRNA_H-paniculata_contig5642.13172.1|Name=mRNA_H-paniculata_contig5642.13172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1899bp|location=Sequence derived from alignment at H-paniculata_contig5642:3066..4964+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACGCAAGAAGGGTCGGAGTGCTCTATTTGTGCCGTATAACGAATATT
CTCTGTAAACTAAGGTGGATTTTCCCTTGCACCTTTGATATACCGCACTT
GTATCATGCAAAACTCCCGAATTCTGCCGACATGGCCGCCTTCTGCGATC
AAGGCAGGCAACCGGCAAAGGAGGAGCACCTCGGCAACAAAGGCATCGCT
TGCCAGAGTAGCCGGGCGACCAGTAGCAGCAGTCCACCCTTCACGGGGAT
CACGTCGAGGTGCTGATTTTGTTGTGCTCGGTAATGAGCTGTCTTTCTTG
AGCACCCCCATCTTTAGCGGCGATGTCAGTGATGACCATTCTTGCATCAT
CAGCGAAGAAGGCACGTTGGATCGATCGTGTTCTTCTCTGATTTCGACAG
CACCATCTACGACGCCGTCTGACCATCACGAAGACCTGATGAATGCCCCC
AGCAGAACCGAGAACGATGGTCGCAAGACAGGCACCCTTTCGCCGACAGC
AGAGCCAACGGTGAGCGTGGCGGACCATCGGAACTATTCCGGCAAGTGCG
AATATGGCTGTATGCAACATGAACCCAAGAAGTGTAGCAATTTGTCAGCG
AAACGCCGGGATGTGGTCTTCCGTGATGCACGTGCGTGCTGTTTGCAAGG
TATGCCCAGTGTTTGCACGGTTCGTACGGCGCCAAACGTGGCAATGGAAC
GAGCTGAAACATTGCGTGCGCACGTATCACGACAGATTGAACGCACAGGG
CCTACCACTGTTGTCGTTAGGCAAGCCGGCAGTCGCCTACCTCAGGGTAA
GAATGCGTCCAGCAGCAACGGCGCAGCCCAAGTTAACACTAATAGTGCAC
CGTTGAAGAGTCAAGCACGATCATCCTCTGCAGTCGAACAAGTGCCGCGG
TCTGCTGCTCAATCACCGTGCTCGTCGCTCGAGTCGGAGGTCGTCCGGGA
TGTTTTCGGTGGCGGTGATTTTGTGACGCAACGAAACGGGATGCACACGG
CATGGCGGCGAGCGAACCTAGCGCTCCAAACAACTGCCGCGGACTCGCTC
CAACCGCCGCCAGTTGAGGAGGGTGTTGTAGCAGCGTCTCCCACAACAGC
AGACAGGCACGTGGTCGATGAAAACAAGAATCCGATACCCGTAGAGAAGG
AACAACAGCTCAGGCGGGTGTGCCTTCGAAGGCACTTCATTCCTCCATCG
TCTGCCGACAAAAATACCCCTATTACGAGCAACGATGGCGCACGAGGCCC
CCCGGAGTCGAGGTTGTTCCTTAGACGGCACCGCGGGCTCTCTGCACGCC
CTACTCGAGAAAATGTGCGTTCTGCTGCCAATGTTCCGTCTTCCGTGCGA
GGTGTGGATAGCAGCAGCTACAACAGCAGTGGCGGTGCAGCGCGGAAACC
CGCGGGGGGGGGCAAGAAGTCGCCGCCCGAAGCCCGGACCTTGCGATTCT
CCGGTGCATCCTCAGAGCATCTCGCAGACGCAGCCATTGTACCGCGACGA
CGAGTTGGCGAGGGCAGGCGAGTCTCTGCCCCAGCAGTTCTGGAAGGTCG
TGTGGTGGGTCGGTTTGAAGCGGGAAGCGGGCAGGCCTCATCCCAGCACA
GAAGTCGCTCTAGACTCGGTAAAAACGGCAGCCCGGACCAACCCGTAGAT
CGCGGAACCCTGGAAAATCGAGCGGCGACCGTGGCACCGCTGTCTTCCGC
GGCGGCCCGTAAGAACATTGCAACCGTCGCGCGCAAGAGTAAGGTGGGCA
CCAGAGCGGATCCAGTTACGCTGTACCGGGAGCGACAAGACGCAGAGGTC
CGGAGGACAAGCGCTGCTGCAAGGAAGAGAACGTCGAGGAGGGAAGGATG
CGATCGCCGTCACATGGATGGTGCTCCTACGGCTGTAGGATACTTTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5642:3066..4964+

>mRNA_H-paniculata_contig5642.13172.1 ID=mRNA_H-paniculata_contig5642.13172.1|Name=mRNA_H-paniculata_contig5642.13172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3588bp|location=Sequence derived from alignment at H-paniculata_contig5642:3066..4964+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAAACTCCCGAATTCTGCCGACATGGCCGCCTTCTGCGATCAAGGC
AGGCAACCGGCAAAGGAGGAGCACCTCGGCAACAAAGGCATCGCTTGCCA
GAGTAGCCGGGCGACCAGTAGCAGCAGTCCACCCTTCACGGGGATCACGT
CGAGGTGCTGATTTTGTTGTGCTCGGTAATGAGCTGTCTTTCTTGAGCAC
CCCCATCTTTAGCGGCGATGTCAGTGATGACCATTCTTGCATCATCAGCG
AAGAAGGCACGTTGGATCGATCGTGTTCTTCTCTGATTTCGACAGCACCA
TCTACGACGCCGTCTGACCATCACGAAGACCTGATGAATGCCCCCAGCAG
AACCGAGAACGATGGTCGCAAGACAGGCACCCTTTCGCCGACAGCAGAGC
CAACGGTGAGCGTGGCGGACCATCGGAACTATTCCGGCAAGTGCGAATAT
GGCTGTATGCAACATGAACCCAAGAAGTGTAGCAATTTGTCAGCGAAACG
CCGGGATGTGGTCTTCCGTGATGCACGTGCGTGCTGTTTGCAAGGTATGC
CCAGTGTTTGCACGGTTCGTACGGCGCCAAACGTGGCAATGGAACGAGCT
GAAACATTGCGTGCGCACGTATCACGACAGATTGAACGCACAGGGCCTAC
CACTGTTGTCGTTAGGCAAGCCGGCAGTCGCCTACCTCAGGGTAAGAATG
CGTCCAGCAGCAACGGCGCAGCCCAAGTTAACACTAATAGTGCACCGTTG
AAGAGTCAAGCACGATCATCCTCTGCAGTCGAACAAGTGCCGCGGTCTGC
TGCTCAATCACCGTGCTCGTCGCTCGAGTCGGAGGTCGTCCGGGATGTTT
TCGGTGGCGGTGATTTTGTGACGCAACGAAACGGGATGCACACGGCATGG
CGGCGAGCGAACCTAGCGCTCCAAACAACTGCCGCGGACTCGCTCCAACC
GCCGCCAGTTGAGGAGGGTGTTGTAGCAGCGTCTCCCACAACAGCAGACA
GGCACGTGGTCGATGAAAACAAGAATCCGATACCCGTAGAGAAGGAACAA
CAGCTCAGGCGGGTGTGCCTTCGAAGGCACTTCATTCCTCCATCGTCTGC
CGACAAAAATACCCCTATTACGAGCAACGATGGCGCACGAGGCCCCCCGG
AGTCGAGGTTGTTCCTTAGACGGCACCGCGGGCTCTCTGCACGCCCTACT
CGAGAAAATGTGCGTTCTGCTGCCAATGTTCCGTCTTCCGTGCGAGGTGT
GGATAGCAGCAGCTACAACAGCAGTGGCGGTGCAGCGCGGAAACCCGCGG
GGGGGGGCAAGAAGTCGCCGCCCGAAGCCCGGACCTTGCGATTCTCCGGT
GCATCCTCAGAGCATCTCGCAGACGCAGCCATTGTACCGCGACGACGAGT
TGGCGAGGGCAGGCGAGTCTCTGCCCCAGCAGTTCTGGAAGGTCGTGTGG
TGGGTCGGTTTGAAGCGGGAAGCGGGCAGGCCTCATCCCAGCACAGAAGT
CGCTCTAGACTCGGTAAAAACGGCAGCCCGGACCAACCCGTAGATCGCGG
AACCCTGGAAAATCGAGCGGCGACCGTGGCACCGCTGTCTTCCGCGGCGG
CCCGTAAGAACATTGCAACCGTCGCGCGCAAGAGTAAGGTGGGCACCAGA
GCGGATCCAGTTACGCTGTACCGGGAGCGACAAGACGCAGAGGTCCGGAG
GACAAGCGCTGCTGCAAGGAAGAGAACGTCGAGGAGGGAAGGATGCGATC
GCCGTCACATGGATGGTGCTCCTACGGCTGTAGGATACTTTGGGATGCAA
AACTCCCGAATTCTGCCGACATGGCCGCCTTCTGCGATCAAGGCAGGCAA
CCGGCAAAGGAGGAGCACCTCGGCAACAAAGGCATCGCTTGCCAGAGTAG
CCGGGCGACCAGTAGCAGCAGTCCACCCTTCACGGGGATCACGTCGAGGT
GCTGATTTTGTTGTGCTCGGTAATGAGCTGTCTTTCTTGAGCACCCCCAT
CTTTAGCGGCGATGTCAGTGATGACCATTCTTGCATCATCAGCGAAGAAG
GCACGTTGGATCGATCGTGTTCTTCTCTGATTTCGACAGCACCATCTACG
ACGCCGTCTGACCATCACGAAGACCTGATGAATGCCCCCAGCAGAACCGA
GAACGATGGTCGCAAGACAGGCACCCTTTCGCCGACAGCAGAGCCAACGG
TGAGCGTGGCGGACCATCGGAACTATTCCGGCAAGTGCGAATATGGCTGT
ATGCAACATGAACCCAAGAAGTGTAGCAATTTGTCAGCGAAACGCCGGGA
TGTGGTCTTCCGTGATGCACGTGCGTGCTGTTTGCAAGGTATGCCCAGTG
TTTGCACGGTTCGTACGGCGCCAAACGTGGCAATGGAACGAGCTGAAACA
TTGCGTGCGCACGTATCACGACAGATTGAACGCACAGGGCCTACCACTGT
TGTCGTTAGGCAAGCCGGCAGTCGCCTACCTCAGGGTAAGAATGCGTCCA
GCAGCAACGGCGCAGCCCAAGTTAACACTAATAGTGCACCGTTGAAGAGT
CAAGCACGATCATCCTCTGCAGTCGAACAAGTGCCGCGGTCTGCTGCTCA
ATCACCGTGCTCGTCGCTCGAGTCGGAGGTCGTCCGGGATGTTTTCGGTG
GCGGTGATTTTGTGACGCAACGAAACGGGATGCACACGGCATGGCGGCGA
GCGAACCTAGCGCTCCAAACAACTGCCGCGGACTCGCTCCAACCGCCGCC
AGTTGAGGAGGGTGTTGTAGCAGCGTCTCCCACAACAGCAGACAGGCACG
TGGTCGATGAAAACAAGAATCCGATACCCGTAGAGAAGGAACAACAGCTC
AGGCGGGTGTGCCTTCGAAGGCACTTCATTCCTCCATCGTCTGCCGACAA
AAATACCCCTATTACGAGCAACGATGGCGCACGAGGCCCCCCGGAGTCGA
GGTTGTTCCTTAGACGGCACCGCGGGCTCTCTGCACGCCCTACTCGAGAA
AATGTGCGTTCTGCTGCCAATGTTCCGTCTTCCGTGCGAGGTGTGGATAG
CAGCAGCTACAACAGCAGTGGCGGTGCAGCGCGGAAACCCGCGGGGGGGG
GCAAGAAGTCGCCGCCCGAAGCCCGGACCTTGCGATTCTCCGGTGCATCC
TCAGAGCATCTCGCAGACGCAGCCATTGTACCGCGACGACGAGTTGGCGA
GGGCAGGCGAGTCTCTGCCCCAGCAGTTCTGGAAGGTCGTGTGGTGGGTC
GGTTTGAAGCGGGAAGCGGGCAGGCCTCATCCCAGCACAGAAGTCGCTCT
AGACTCGGTAAAAACGGCAGCCCGGACCAACCCGTAGATCGCGGAACCCT
GGAAAATCGAGCGGCGACCGTGGCACCGCTGTCTTCCGCGGCGGCCCGTA
AGAACATTGCAACCGTCGCGCGCAAGAGTAAGGTGGGCACCAGAGCGGAT
CCAGTTACGCTGTACCGGGAGCGACAAGACGCAGAGGTCCGGAGGACAAG
CGCTGCTGCAAGGAAGAGAACGTCGAGGAGGGAAGGATGCGATCGCCGTC
ACATGGATGGTGCTCCTACGGCTGTAGGATACTTTGGG
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