mRNA_H-paniculata_contig5642.13174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5642.13174.1
Unique NamemRNA_H-paniculata_contig5642.13174.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5642.13174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5642contigH-paniculata_contig5642:10366..13280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size344
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5642.13174.1prot_H-paniculata_contig5642.13174.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5642 10480..13280 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930602.08791-UTR-H-paniculata_contig5642:10365..104791622930602.08791-UTR-H-paniculata_contig5642:10365..10479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5642 10366..10479 +
1691481367.202893-UTR-H-paniculata_contig5642:10365..104791691481367.202893-UTR-H-paniculata_contig5642:10365..10479Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5642 10366..10479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930602.1043046-CDS-H-paniculata_contig5642:10479..106421622930602.1043046-CDS-H-paniculata_contig5642:10479..10642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5642 10480..10642 +
1691481367.2133343-CDS-H-paniculata_contig5642:10479..106421691481367.2133343-CDS-H-paniculata_contig5642:10479..10642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5642 10480..10642 +
1622930602.1188838-CDS-H-paniculata_contig5642:13215..132801622930602.1188838-CDS-H-paniculata_contig5642:13215..13280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5642 13216..13280 +
1691481367.221388-CDS-H-paniculata_contig5642:13215..132801691481367.221388-CDS-H-paniculata_contig5642:13215..13280Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5642 13216..13280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5642.13174.1

>prot_H-paniculata_contig5642.13174.1 ID=prot_H-paniculata_contig5642.13174.1|Name=mRNA_H-paniculata_contig5642.13174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MNKSKSIQRQITRKRSAAPVRPDNDSHVEDTLHHEDCLNNEDPYALEAGV
ILQKGGPLARYRAASPLVCHVAKVSG
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mRNA from alignment at H-paniculata_contig5642:10366..13280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5642.13174.1 ID=mRNA_H-paniculata_contig5642.13174.1|Name=mRNA_H-paniculata_contig5642.13174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2915bp|location=Sequence derived from alignment at H-paniculata_contig5642:10366..13280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCGTTTCACATCATAGCTGCTCTCGCATATATAACAGCCACGGCTAAA
ACAGAGGATTTTCCCCCCACGACGCCTCGACAAGTACGCGAAAACGTTGG
CTTTAGCCCGGAGGATGAATAAGTCGAAGTCGATCCAGCGTCAAATTACT
CGAAAACGGTCGGCCGCACCGGTTCGTCCCGACAACGACTCTCATGTTGA
GGATACCCTCCACCATGAGGACTGTTTGAATAATGAGGATCCCTACGCCT
TGGAAGCTGGCGTTATTCTTCAAAAAGGTGTGAGATAACATACGTGAGAG
GATTTAACACGGCAGTGGTTGATACCCAGGCTCCCCGCTCTTCGATTTGC
AGCCTCCAATAGTGCAACGAAATGATCTGACAGTCAGGTTCTAAATGTAC
TGTCGTTTTCTGTGATGTATAAAACATTGCCTGAAAAACCAGTGCGCCTC
TCCCATCATGTCGCCAGCGAGATCGTACGGCGGTTACGAGCGAGGTGCTG
GTGCATACGGCTGAAGAGAAGTGGTTGCCCGTGTACTGACTGACTGCTGC
GTATGCATGATTAACTGACTGCGTGGTTGTTGTGCGCTCTGAAAATGTTT
GCGATGTGTGCCTTCAACGAAGAAGTGAATCAGACGATGTACAAGTCTGC
AAGTCTGGCCTACCGCTCCTGATGTTCGTTTTTAAAACTGAAAAAGTCAT
CATGAGTTACTTCACAACCGAAGACAGACACATCGCTGGTACCTTTTATT
TGAGGAGACTTTTTGGAACTTCTCTCGACATTCCTGCGTGGCGTCATCGT
GCCTGGCATCAAATTGCACCTTCGTCACAACTAACAAACTCTCACGAGCC
AAATTCGATGCATGCATCGGAGTCGTCCTAGAAGGGACGGCTCCAGAAAA
AGCTGACAATAATTATTACTTTCGTAAATATATATTTTTCAACGTACCGC
CGCCCCTCCCACGACAAGCACACCCAAAGCATGAACAGAGGTGCATCTTA
CCGCGTTCTGCGGGGCGCACTTACTCTGCAATTATTCGTGCTGAAATCCT
GTAGCTCCCCTTGTTGCCGTAATCACGGTACGGTAGGGCGACATGCTTGT
TTATTTTCTGGTCTCTATCCATGGCTGTGCTACCTTGAACAATTACTCGA
TTCAAAAGACAAAATGGGTACCACTGTAAAATGTGTTGTAGTCGGTACGG
TACAGATATCTGTCTGTCCGTCTCTTCGCTTCCTACCTGGTATGATATGT
GCACTTTTTTTCGTGACAGCTGCTCGGAGATCAATCCCAATGCATGGCAG
CAGCGTCATGACCGTCAATTTTTGCATCCACACAGCAGACAGGGTGAACC
AGACAGGTAGTGACGATGCATATACTTGTTCTATATACAGCATTCACCAC
TGATGGATTGTGTGGTGTTCATCATTCTCGTATCCACTTGAGTGAGCGGA
AACTCGAAAAATTGAGAACTGAAGGATGGATAGTGAGTGCACGGGATGCC
ACGAACCTTGAATGTGTCGTTGTTTTGCATGAGAATTCATCGTGTATGCG
TGGTCAGTTTATACCCTTCTTCCAAATATGATAGGTTGTTTTACAAACGC
ATTTAGTTCTAGGATGTCTGTTGCGTGGAGGACGTGTGTTGCGTTATAAC
GACGACATCTACGAAACATGGCCTCCACGAAGCGGTGGAAATTAAAGCTA
CCAAAACGGACAATACTGGTATCTGTTTCGGCGAGAGTTTCGACCGAAAG
CATACGATAGAGCTACCCCTTCACACGCTATCCTCCGACGACATCGCTTG
TGAATGCTATAATTTGAATTGGGTTTACGTTATTTATTTATTTTATTCAC
CTATACCGTGAAACTGCTGGGTGGAAACCCCGGGGGTAGAGCTTGAATAT
TCCCTAATAAGACAGAGTACGACAAGTGCGAGTAGCGGATTGAACTATAT
GTTCAATACAATTGGCCTCGATAGCGAATCATACACTTGATATTTCACAT
ATTGTATGGGATGTGCGCGTGTGTGGCTTCATTAAAATATGCTAGTAGTG
CAATAGTTGGAGGCTGGACTATGGCGTGTTATAGCGAGTTGGGCTGTAGT
AACTTACGGTCCACCTGGTCTCGACCGCGACAGGCGAAGTTGCGATTAAA
AAAATATGTTATTATTATTATTATTATTATTACCTTCTGTATTGTGATGC
TTGTGTCGTTGAAGTAAAATACAGTTACATGTGGGTGCATAGTAGCGCGA
TGCAGTGCATTGCGTCACCAGCAGCTGTAGAGTCCACCGCCCTATGTAAC
GCAGCATAATGTCCGGCCACATATCTTATTAATCTATACGCTGGGAGGTG
AGGATCTCGCCGTTTTCTTTCCAACTCTGGACTGGGGTAACTTCTTGAGG
GCGAATCTTGACGGACATTATGCCGACCTCCGATCACAACGAGCCGTTGT
GCGTGCGTTTTGGATTATGACTAACGGGTAGAAGGATGGGCATGAACTAC
TCAAGGGCGTTGCTCTGGCTCTTGCTTATTTCAAGTAGTAACATACCTGG
AGGTTCGACCACAATCCCTATAATAAACACGGATAACTGAAGTAAAGTAC
AGACAGACAGTTGCGCAGGTAAATTCGTCGCCGCTTGTCATTCAAGGTGT
TTCGACCAATCGGATGAATTCACAATACAAAGTGACCAACAGAAGAGGTG
CAGGCACATTATACCTCTCACCAGGATGTATCTTGTATAGGGTCACTTCC
AGTAGAAGTTCCAGTCATGTTAATTTTGATAGTTTCAGAAAATTCTCATC
AACGTGTCGCGTGCTTAATGTCTACCCTTTTCTTCTCCCCCCCCCCGCAG
GCGGACCCCTTGCGCGATATCGCGCCGCGTCTCCGCTGGTATGTCACGTT
GCTAAGGTGTCTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5642:10366..13280+

>mRNA_H-paniculata_contig5642.13174.1 ID=mRNA_H-paniculata_contig5642.13174.1|Name=mRNA_H-paniculata_contig5642.13174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig5642:10366..13280+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATAAGTCGAAGTCGATCCAGCGTCAAATTACTCGAAAACGGTCGGC
CGCACCGGTTCGTCCCGACAACGACTCTCATGTTGAGGATACCCTCCACC
ATGAGGACTGTTTGAATAATGAGGATCCCTACGCCTTGGAAGCTGGCGTT
ATTCTTCAAAAAGATGAATAAGTCGAAGTCGATCCAGCGTCAAATTACTC
GAAAACGGTCGGCCGCACCGGTTCGTCCCGACAACGACTCTCATGTTGAG
GATACCCTCCACCATGAGGACTGTTTGAATAATGAGGATCCCTACGCCTT
GGAAGCTGGCGTTATTCTTCAAAAAGGCGGACCCCTTGCGCGATATCGCG
CCGCGTCTCCGCTGGTATGTCACGTTGCTAAGGTGTCTGGGGCGGACCCC
TTGCGCGATATCGCGCCGCGTCTCCGCTGGTATGTCACGTTGCTAAGGTG
TCTGGG
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