prot_H-paniculata_contig56416.13171.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig56416.13171.1
Unique Nameprot_H-paniculata_contig56416.13171.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length41
Homology
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BLAST of mRNA_H-paniculata_contig56416.13171.1 vs. uniprot
Match: D7G788_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G788_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.660e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 
Query:    1 MLAVGGEDGMIRLLDPRLRSSRVEHVLKAHTGPVQALAVTP 41
            MLAVGG DG IRLLDPRLRS+ VEHVL+AHTGPVQA+AVTP
Sbjct:  153 MLAVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTP 193
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BLAST of mRNA_H-paniculata_contig56416.13171.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.230e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 0 
Query:    1 MLAVGGEDGMIRLLDPRLRSSRVEHVLKAHTGPVQALAVTP 41
            ML VGG DG IRLLDPRLRS+ VEHVL+AHTGPVQA+AVTP
Sbjct:   94 MLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTP 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56416.13171.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G788_ECTSI1.660e-1485.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX54_9PHAE1.230e-1382.93Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..41
e-value: 5.6E-8
score: 34.3
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..41
score: 8.914
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56416contigH-paniculata_contig56416:491..613 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56416.13171.1mRNA_H-paniculata_contig56416.13171.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig56416 491..613 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig56416.13171.1 ID=prot_H-paniculata_contig56416.13171.1|Name=mRNA_H-paniculata_contig56416.13171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
MLAVGGEDGMIRLLDPRLRSSRVEHVLKAHTGPVQALAVTP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf