mRNA_H-paniculata_contig56416.13171.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56416.13171.1
Unique NamemRNA_H-paniculata_contig56416.13171.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig56416.13171.1 vs. uniprot
Match: D7G788_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G788_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.660e-14
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLAVGGEDGMIRLLDPRLRSSRVEHVLKAHTGPVQALAVTP 123
            MLAVGG DG IRLLDPRLRS+ VEHVL+AHTGPVQA+AVTP
Sbjct:  153 MLAVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTP 193
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BLAST of mRNA_H-paniculata_contig56416.13171.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.230e-13
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MLAVGGEDGMIRLLDPRLRSSRVEHVLKAHTGPVQALAVTP 123
            ML VGG DG IRLLDPRLRS+ VEHVL+AHTGPVQA+AVTP
Sbjct:   94 MLTVGGNDGRIRLLDPRLRSTSVEHVLEAHTGPVQAVAVTP 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56416.13171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G788_ECTSI1.660e-1485.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX54_9PHAE1.230e-1382.93Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56416contigH-paniculata_contig56416:491..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930602.0480804-CDS-H-paniculata_contig56416:490..6131622930602.0480804-CDS-H-paniculata_contig56416:490..613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56416 491..613 -
1691481367.1943655-CDS-H-paniculata_contig56416:490..6131691481367.1943655-CDS-H-paniculata_contig56416:490..613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56416 491..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56416.13171.1prot_H-paniculata_contig56416.13171.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56416 491..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56416.13171.1

>prot_H-paniculata_contig56416.13171.1 ID=prot_H-paniculata_contig56416.13171.1|Name=mRNA_H-paniculata_contig56416.13171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
MLAVGGEDGMIRLLDPRLRSSRVEHVLKAHTGPVQALAVTP
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mRNA from alignment at H-paniculata_contig56416:491..613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56416.13171.1 ID=mRNA_H-paniculata_contig56416.13171.1|Name=mRNA_H-paniculata_contig56416.13171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig56416:491..613- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGCCGTAGGAGGAGAAGATGGTATGATCCGTCTGCTGGACCCCCG
GCTGCGCAGTTCCAGGGTAGAACACGTCCTGAAGGCTCACACCGGACCCG
TTCAAGCGCTGGCGGTTACACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig56416:491..613-

>mRNA_H-paniculata_contig56416.13171.1 ID=mRNA_H-paniculata_contig56416.13171.1|Name=mRNA_H-paniculata_contig56416.13171.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig56416:491..613- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGCCGTAGGAGGAGAAGATGGTATGATCCGTCTGCTGGACCCCCG
GCTGCGCAGTTCCAGGGTAGAACACGTCCTGAAGGCTCACACCGGACCCG
TTCAAGCGCTGGCGGTTACACCGATGCTCGCCGTAGGAGGAGAAGATGGT
ATGATCCGTCTGCTGGACCCCCGGCTGCGCAGTTCCAGGGTAGAACACGT
CCTGAAGGCTCACACCGGACCCGTTCAAGCGCTGGCGGTTACACCG
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